HHsearch alignment for GI: 254780928 and conserved domain: PRK09350

>PRK09350 lysyl-tRNA synthetase; Provisional.
Probab=98.41  E-value=2.9e-06  Score=59.79  Aligned_cols=122  Identities=19%  Similarity=0.217  Sum_probs=72.1

Q ss_pred             CCCCH----HHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEE--EEECC---CCCEEEECCC
Q ss_conf             65886----689999999999999999859848016520228875202675543332216--89869---9988999888
Q gi|254780928|r   16 ADCPT----KEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVF--SLQDD---DGQWISLRYD   86 (496)
Q Consensus        16 ~D~~p----~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y--~f~D~---~g~~l~LRpD   86 (496)
T Consensus         5 ~~w~~~as~~~l~~Rs~i~~~iR~ff~~~gFlEVeTP~L~~------~t~~~~~--~~~f~~~~~~~~~~~~~~~yL~~-   75 (325)
T PRK09350          5 ASWQPSASIKNLLKRAAIIAEIRRFFADRGVLEVETPAMSQ------ATVTDIH--LVPFETRFVGPGHSQGKTLWLMT-   75 (325)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC------CCCCCCC--CCCEEEECCCCCCCCCCCEEEEC-
T ss_conf             87777147999999999999999999988968977984257------7887646--76222102565545676645507-


Q ss_pred             CHHHHH--HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             838999--99995112055411233101333025876444211111000121000024578899999999975
Q gi|254780928|r   87 LTAPLA--RYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEA  157 (496)
Q Consensus        87 lT~~~a--R~~~~~~~~~~~p~k~yy~g~vfR~e~p~~Gr~REf~Q~g~eiiG~~~~~~DaEii~l~~~~l~~  157 (496)
T Consensus        76 -SPql~~k~l~~~G~------~rvfqI~~~FR~E~~~~~H~pEFtmlE~~~~~~d~~----d~m~~~e~ll~~  137 (325)
T PRK09350         76 -SPEYHMKRLLAAGS------GPIFQLCRSFRNEEAGRYHNPEFTMLEWYRPHYDMY----RLMNEVDDLLQQ  137 (325)
T ss_pred             -CHHHHHHHHHHCCC------CCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHCCCHH----HHHHHHHHHHHH
T ss_conf             -91999999986678------855896113228999876573778889998154899----999999999999