HHsearch alignment for GI: 254780928 and conserved domain: PRK09350
>PRK09350 lysyl-tRNA synthetase; Provisional.
Probab=98.41 E-value=2.9e-06 Score=59.79 Aligned_cols=122 Identities=19% Similarity=0.217 Sum_probs=72.1
Q ss_pred CCCCH----HHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEE--EEECC---CCCEEEECCC
Q ss_conf 65886----689999999999999999859848016520228875202675543332216--89869---9988999888
Q gi|254780928|r 16 ADCPT----KEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVF--SLQDD---DGQWISLRYD 86 (496)
Q Consensus 16 ~D~~p----~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y--~f~D~---~g~~l~LRpD 86 (496)
T Consensus 5 ~~w~~~as~~~l~~Rs~i~~~iR~ff~~~gFlEVeTP~L~~------~t~~~~~--~~~f~~~~~~~~~~~~~~~yL~~- 75 (325)
T PRK09350 5 ASWQPSASIKNLLKRAAIIAEIRRFFADRGVLEVETPAMSQ------ATVTDIH--LVPFETRFVGPGHSQGKTLWLMT- 75 (325)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC------CCCCCCC--CCCEEEECCCCCCCCCCCEEEEC-
T ss_conf 87777147999999999999999999988968977984257------7887646--76222102565545676645507-
Q ss_pred CHHHHH--HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 838999--99995112055411233101333025876444211111000121000024578899999999975
Q gi|254780928|r 87 LTAPLA--RYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEA 157 (496)
Q Consensus 87 lT~~~a--R~~~~~~~~~~~p~k~yy~g~vfR~e~p~~Gr~REf~Q~g~eiiG~~~~~~DaEii~l~~~~l~~ 157 (496)
T Consensus 76 -SPql~~k~l~~~G~------~rvfqI~~~FR~E~~~~~H~pEFtmlE~~~~~~d~~----d~m~~~e~ll~~ 137 (325)
T PRK09350 76 -SPEYHMKRLLAAGS------GPIFQLCRSFRNEEAGRYHNPEFTMLEWYRPHYDMY----RLMNEVDDLLQQ 137 (325)
T ss_pred -CHHHHHHHHHHCCC------CCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHCCCHH----HHHHHHHHHHHH
T ss_conf -91999999986678------855896113228999876573778889998154899----999999999999