HHsearch alignment for GI: 254780928 and conserved domain: PRK12325
>PRK12325 prolyl-tRNA synthetase; Provisional.
Probab=100.00 E-value=4.9e-36 Score=253.15 Aligned_cols=387 Identities=18% Similarity=0.234 Sum_probs=234.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCC
Q ss_conf 71037998765886689999999999999999859848016520228875202675543332216898699988999888
Q gi|254780928|r 7 LRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRYD 86 (496)
Q Consensus 7 ~~~~~P~G~~D~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~g~~l~LRpD 86 (496)
T Consensus 31 ~i~~~~~Gl~~wlP~G~~i~~~le~~ir~e~~~~G~~eV~tP~l~~~~Lw-~~SGh~~~y~~~mf~~~d~~~~~~~l~Pm 109 (438)
T PRK12325 31 MIRQQAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLW-RESGRYDAYGKEMLRIKDRHDREMLYGPT 109 (438)
T ss_pred CCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHH-HHHCCHHHHHHHHCEEECCCCCEECCCCC
T ss_conf 75634687322160589999999999999999749979987765877899-86287645557421213477774313899
Q ss_pred CHHHHHHHHHHHH-HHCCCCHHHHHHHHHHCCC-CCCCC--CCCCCCCCCHHHHHCCCHHHHH---HHHHHHHHHHHHCC
Q ss_conf 8389999999511-2055411233101333025-87644--4211111000121000024578---89999999997518
Q gi|254780928|r 87 LTAPLARYVAENF-DTIVFPCRTYRIGPVFRNE-KHGPG--RFRQFIQCDVDNVGSSAETADA---EMCMMMADTLEAVG 159 (496)
Q Consensus 87 lT~~~aR~~~~~~-~~~~~p~k~yy~g~vfR~e-~p~~G--r~REf~Q~g~eiiG~~~~~~Da---Eii~l~~~~l~~lg 159 (496)
T Consensus 110 nc~~~~~i~~~~~~SYRdLPlrl~q~g~~~R~E~sp~~GLlRvReF~m~Dah~F~~~~e~~~~~~~~v~~~y~~if~~lg 189 (438)
T PRK12325 110 NEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARKSYNRMFVAYLRTFKRLG 189 (438)
T ss_pred CCHHHHHHHHHCCCCHHHCCHHHHHHHHEECCCCCCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 84999999974034265425788764440112026764410122333041543246889999999999999999999809
Q ss_pred CCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 88777113036605589999983256035643345553332200128967899862101650035553048999778998
Q gi|254780928|r 160 IKRNDYHIGINNRKILDGILEKIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDI 239 (496)
Q Consensus 160 l~~~~~~I~in~~~il~~il~~lgi~~~~~~~~~~~~~~~idkl~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (496)
T Consensus 190 l~~--~~v~ad~-g~i-------gg~~s---~Ef~~~~~-------~ged~i---~~~~---~~~~~----~~~~~---- 235 (438)
T PRK12325 190 LKA--IPMRADT-GPI-------GGDLS---HEFHILAE-------TGESTV---FYDK---DFLDL----PVPGE---- 235 (438)
T ss_pred CCE--EEEEECC-CCC-------CCCCH---HHHHHHHH-------CCCHHE---EECH---HHHHC----CCCCC----
T ss_conf 944--8998236-766-------77512---67476652-------265024---6613---33422----56765----
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 8874047856889989986035732588899999999998750888443001-101001221234124899854666776
Q gi|254780928|r 240 MVSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKI-SSTIVRGLEYYTGCVYEAILGFPVMNE 318 (496)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~i~~~l~~~gv~~~~i~~-Dl~lvRgLdYYTG~vFE~~~~~~~~~~ 318 (496)
T Consensus 236 -----~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~-~~~~----~~~~~~~~~~~~iE--vG~if~l--------- 288 (438)
T PRK12325 236 -----DIDYDADLQDIVDEWTSLY---AATDEMH---DE-AKFA----AVPEERRLSARGIE--VGHIFYF--------- 288 (438)
T ss_pred -----CCCHHHHHHHHHHHHHHHH---HHHHHHC---CH-HHCC----CCCHHHHEECCCEE--EEEEEEC---------
T ss_conf -----5462356678998887650---3466434---67-5537----66756630113303--3124304---------
Q ss_pred CCCCCCEEEECCCCCCCCC-CCCC---CCCCCCC--CEEEECCHHHHHHHHHCCC-----CCCCCCCCCEEEEEEECC-C
Q ss_conf 7666310110032323552-1112---3456774--2133110168999997368-----776655577148998269-7
Q gi|254780928|r 319 KQKPVVFGSVGGGGRYDGL-VSRF---KGQNVPA--TGFSIGISRLIVALKSLES-----STNNIKEMGPVLITTMDH-D 386 (496)
Q Consensus 319 ~~~~~~~~aI~~GGRYD~L-~~~f---~~~~~pa--vGfaigverl~~~l~~~~~-----~~~~~~~~~~v~V~~~~~-~ 386 (496)
T Consensus 289 ------------g~~ys~~~~~~~~~~dg~~~~~~m~~~GIgieR~ia~liE~~~d~~G~~wP~wlAP~QV~Iipi~~~~ 356 (438)
T PRK12325 289 ------------GTKYSEPMNAKVQGPDGKEVPVHMGSYGIGVSRLVAAIIEASHDDKGIIWPESVAPFKVGIINLKQGD 356 (438)
T ss_pred ------------CCCCCHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCC
T ss_conf ------------53015220674448777732225541334287899999998364688546767486579999706997
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEEECCCHHHH
Q ss_conf 68999999999999987983999718999988999999877998999988728748818997878883643311201443
Q gi|254780928|r 387 SDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESW 466 (496)
Q Consensus 387 ~~~~~~~~~ia~~Lr~~Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v~vK~l~~g~q~~~~~~~~~~~ 466 (496)
T Consensus 357 ~~~~~~A~~l~~~L~~~girv~~Ddr-~e~lG~Kir~a~l~giPy~ivVG~ke~e~g~V~vR~R~~~~~----------- 424 (438)
T PRK12325 357 AACDAACEKLYAALTAAGVDVLYDDT-DERAGAKFATMDLIGLPWQIIVGPKGLAEGKVELKDRKTGER----------- 424 (438)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHCCCCEEEEEECCHHHCCEEEEEECCCCCE-----------
T ss_conf 99999999999999978998999899-999729999998669998999907805469899999889960-----------
Q ss_pred HHCCCCCEEECHHHHHHHHH
Q ss_conf 20233510307999999999
Q gi|254780928|r 467 REARVAQITIPISELVSTVK 486 (496)
Q Consensus 467 ~~~~~~q~~v~~~~l~~~~~ 486 (496)
T Consensus 425 -------~~v~ide~i~~lk 437 (438)
T PRK12325 425 -------EELSVEAAINRLK 437 (438)
T ss_pred -------EEEEHHHHHHHHC
T ss_conf -------6764999999860