HHsearch alignment for GI: 254780928 and conserved domain: PRK12445
>PRK12445 lysyl-tRNA synthetase; Reviewed.
Probab=98.28 E-value=7.8e-06 Score=57.07 Aligned_cols=101 Identities=25% Similarity=0.325 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEE-CCCCCEEEECCCCHHHH--HHHHHHH
Q ss_conf 89999999999999999859848016520228875202675543332216898-69998899988883899--9999951
Q gi|254780928|r 22 EIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQ-DDDGQWISLRYDLTAPL--ARYVAEN 98 (496)
Q Consensus 22 ~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~-D~~g~~l~LRpDlT~~~--aR~~~~~ 98 (496)
T Consensus 183 ~~~~Rs~ii~~iR~~l~~~gF~EVeTPil~~~----~-gGa~Ar----pf~t~~~~~~~~~yL~q--SPQLykk~LmvgG 251 (505)
T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI----P-GGASAR----PFITHHNALDLDMYLRI--APELYLKRLVVGG 251 (505)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC----C-CCCCCC----EEEECCCCCCCCEEECC--CCHHHHHHHHHCC
T ss_conf 99999999999999999779389978875554----5-876661----03304667886743416--9399999998579
Q ss_pred HHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 12055411233101333025876444211111000121000
Q gi|254780928|r 99 FDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSS 139 (496)
Q Consensus 99 ~~~~~~p~k~yy~g~vfR~e~p~~Gr~REf~Q~g~eiiG~~ 139 (496)
T Consensus 252 -----f-dRvfeI~r~FRnE~~~~~H~PEFT~lE~e~af~d 286 (505)
T PRK12445 252 -----F-ERVFEINRNFRNEGISVRHNPEFTMMELYMAYAD 286 (505)
T ss_pred -----C-CCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf -----7-4457627876078888665444543568763278