HHsearch alignment for GI: 254780928 and conserved domain: PRK12445

>PRK12445 lysyl-tRNA synthetase; Reviewed.
Probab=98.28  E-value=7.8e-06  Score=57.07  Aligned_cols=101  Identities=25%  Similarity=0.325  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEE-CCCCCEEEECCCCHHHH--HHHHHHH
Q ss_conf             89999999999999999859848016520228875202675543332216898-69998899988883899--9999951
Q gi|254780928|r   22 EIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQ-DDDGQWISLRYDLTAPL--ARYVAEN   98 (496)
Q Consensus        22 ~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~-D~~g~~l~LRpDlT~~~--aR~~~~~   98 (496)
T Consensus       183 ~~~~Rs~ii~~iR~~l~~~gF~EVeTPil~~~----~-gGa~Ar----pf~t~~~~~~~~~yL~q--SPQLykk~LmvgG  251 (505)
T PRK12445        183 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI----P-GGASAR----PFITHHNALDLDMYLRI--APELYLKRLVVGG  251 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC----C-CCCCCC----EEEECCCCCCCCEEECC--CCHHHHHHHHHCC
T ss_conf             99999999999999999779389978875554----5-876661----03304667886743416--9399999998579


Q ss_pred             HHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf             12055411233101333025876444211111000121000
Q gi|254780928|r   99 FDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSS  139 (496)
Q Consensus        99 ~~~~~~p~k~yy~g~vfR~e~p~~Gr~REf~Q~g~eiiG~~  139 (496)
T Consensus       252 -----f-dRvfeI~r~FRnE~~~~~H~PEFT~lE~e~af~d  286 (505)
T PRK12445        252 -----F-ERVFEINRNFRNEGISVRHNPEFTMMELYMAYAD  286 (505)
T ss_pred             -----C-CCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             -----7-4457627876078888665444543568763278