HHsearch alignment for GI: 254780928 and conserved domain: cd00770
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=99.09 E-value=6.7e-11 Score=89.95 Aligned_cols=145 Identities=16% Similarity=0.266 Sum_probs=108.4
Q ss_pred CCCCC--CCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCHHH
Q ss_conf 98765--8866899999999999999998598480165202288752026755433322168986999889998888389
Q gi|254780928|r 13 RGFAD--CPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRYDLTAP 90 (496)
Q Consensus 13 ~G~~D--~~p~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~g~~l~LRpDlT~~ 90 (496)
T Consensus 40 sG~rf~~l~g~ga~Le~AL~~f~~d~~~~~Gy~eV~tP~iv~~~~~~~s-G~~~~~~e~~y~i~~---~~~~Li~tae~~ 115 (297)
T cd00770 40 SGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGT-GQLPKFDEQLYKVEG---EDLYLIATAEVP 115 (297)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH-CCCCCCHHHHHCCCC---HHHHHHHCCCCC
T ss_conf 9877799888899999999999999999879989988530138998543-578763565210355---055554405666
Q ss_pred HHHHHHHH-HHHCCCCHHHHHHHHHHCCCCCCC-----C--CCCCCCCCCHHHHHCCCHHHH--HHHHHHHHHHHHHCCC
Q ss_conf 99999951-120554112331013330258764-----4--421111100012100002457--8899999999975188
Q gi|254780928|r 91 LARYVAEN-FDTIVFPCRTYRIGPVFRNEKHGP-----G--RFRQFIQCDVDNVGSSAETAD--AEMCMMMADTLEAVGI 160 (496)
Q Consensus 91 ~aR~~~~~-~~~~~~p~k~yy~g~vfR~e~p~~-----G--r~REf~Q~g~eiiG~~~~~~D--aEii~l~~~~l~~lgl 160 (496)
T Consensus 116 l~~~~~~~~~~~~dLPlr~~~~s~cfR~Eags~G~d~~GL~RvhqF~kvE~~~~c~pe~s~~~~e~~~~~~e~~l~~L~l 195 (297)
T cd00770 116 LAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGL 195 (297)
T ss_pred EEEEEEEEECCHHHCCCCEEECCCHHHHCCCCCCCCCCCEEEEEECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 22344200317755886502246341320377775555457887211003776168788999999999999999998155
Q ss_pred C
Q ss_conf 8
Q gi|254780928|r 161 K 161 (496)
Q Consensus 161 ~ 161 (496)
T Consensus 196 p 196 (297)
T cd00770 196 P 196 (297)
T ss_pred C
T ss_conf 0