>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.

Probab=98.07 E-value=1.9e-05 Score=54.49 Aligned_cols=99 Identities=28% Similarity=0.444 Sum_probs=61.1 Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCHHHH---HHHHHHHHH Q ss_conf 99999999999999985984801652022887520267554333221689869998899988883899---999995112 Q gi|254780928|r 24 RIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRYDLTAPL---ARYVAENFD 100 (496) Q Consensus 24 ~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~g~~l~LRpDlT~~~---aR~~~~~~~ 100 (496) T Consensus 2 r~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~----~ega~~f----~~~~~~~~~~~~~L~~---Spel~~k~l~~~g-- 68 (280) T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKST----PEGARDF----LVPSRLHPGKFYALPQ---SPQLFKQLLMVSG-- 68 (280) T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCC----CCCCCCC----EECCCCCCCCCCCCCC---CHHHHHHHHHHCC-- T ss_conf 6699999999999998898998798106878----7767664----4244168876036887---9899999998568-- Q ss_pred HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCC Q ss_conf 055411233101333025876444211111000121000 Q gi|254780928|r 101 TIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSS 139 (496) Q Consensus 101 ~~~~p~k~yy~g~vfR~e~p~~Gr~REf~Q~g~eiiG~~ 139 (496) T Consensus 69 ---~-~rvf~i~~~FR~E~~~~~h~~EFtmLE~e~~~~~ 103 (280) T cd00777 69 ---F-DRYFQIARCFRDEDLRADRQPEFTQIDIEMSFVD 103 (280) T ss_pred ---C-CCCEEEECEECCCCCCCCCCHHHHHHHHHCCCCC T ss_conf ---7-7757984517478888766347762344226888

HHsearch alignment for GI: 254780928 and conserved domain: cd00777