HHsearch alignment for GI: 254780928 and conserved domain: cd00858
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.43 E-value=3e-12 Score=98.72 Aligned_cols=101 Identities=15% Similarity=0.211 Sum_probs=85.2
Q ss_pred CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEE
Q ss_conf 66555771489982697689999999999999879839997189999889999998779989999887287488189978
Q gi|254780928|r 370 NNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKD 449 (496)
Q Consensus 370 ~~~~~~~~v~V~~~~~~~~~~~~~~~ia~~Lr~~Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v~vK~ 449 (496)
T Consensus 21 P~~lAP~qv~IiPi~~~d~~~~~a~~i~~~L~~~gi~v~~Dd-~~-s~G~K~~~~d~~giP~~ivIg~~~le~~~VtiR~ 98 (121)
T cd00858 21 PPALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDD-SG-SIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIRE 98 (121)
T ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEC-CC-CHHHHHHHHHHHCCCEEEEEECCEECCCEEEEEE
T ss_conf 886388379999741607779999999999987797799703-88-8314446788748983999927610378799999
Q ss_pred CCCCCEEEEECCCHHHHHHCCCCCEEECHHHHHHHHHHHHH
Q ss_conf 78883643311201443202335103079999999999998
Q gi|254780928|r 450 LAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQ 490 (496)
Q Consensus 450 l~~g~q~~~~~~~~~~~~~~~~~q~~v~~~~l~~~~~~~l~ 490 (496)
T Consensus 99 Rdt~~------------------q~~v~i~el~~~i~~llk 121 (121)
T cd00858 99 RDSMR------------------QVRVKIEELPSYLRELIR 121 (121)
T ss_pred CCCCC------------------EEEEEHHHHHHHHHHHHC
T ss_conf 89995------------------789999999999999859