HHsearch alignment for GI: 254780928 and conserved domain: cd00859
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.72 E-value=9.5e-17 Score=127.91 Aligned_cols=90 Identities=34% Similarity=0.568 Sum_probs=77.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCE
Q ss_conf 71489982697689999999999999879839997189999889999998779989999887287488189978788836
Q gi|254780928|r 376 GPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKE 455 (496)
Q Consensus 376 ~~v~V~~~~~~~~~~~~~~~ia~~Lr~~Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v~vK~l~~g~q 455 (496)
T Consensus 2 vdv~ii~~~--~~~~~~a~~i~~~LR~~gi~v~~~~~-~~~l~kqlk~A~k~~~~~~iiiG~~E~~~~~v~iK~~~t~~q 78 (91)
T cd00859 2 VDVYVVPLG--EGALSEALELAEQLRDAGIKAEIDYG-GRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQ 78 (91)
T ss_pred CEEEEEEEC--HHHHHHHHHHHHHHHHCCCCEEEEEC-CCCHHHHHHHHHHHCCCEEEEECCHHHHCCEEEEEECCCCCE
T ss_conf 489999818--69999999999999988993999736-887889999999709988999865142169799999999958
Q ss_pred EEEECCCHHHHHHCCCCCEEECHHHHHHHHH
Q ss_conf 4331120144320233510307999999999
Q gi|254780928|r 456 LSREIKNNESWREARVAQITIPISELVSTVK 486 (496)
Q Consensus 456 ~~~~~~~~~~~~~~~~~q~~v~~~~l~~~~~ 486 (496)
T Consensus 79 ~------------------~i~~~eli~~lK 91 (91)
T cd00859 79 E------------------TVALDELVEELK 91 (91)
T ss_pred E------------------EEEHHHHHHHHC
T ss_conf 9------------------988999999759