HHsearch alignment for GI: 254780928 and conserved domain: cd00861

>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.22  E-value=2.2e-10  Score=86.63  Aligned_cols=87  Identities=21%  Similarity=0.214  Sum_probs=71.1

Q ss_pred             CEEEEEEECC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCC
Q ss_conf             7148998269-768999999999999987983999718999988999999877998999988728748818997878883
Q gi|254780928|r  376 GPVLITTMDH-DSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGK  454 (496)
Q Consensus       376 ~~v~V~~~~~-~~~~~~~~~~ia~~Lr~~Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v~vK~l~~g~  454 (496)
T Consensus         2 ~qv~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~Dd-r~~~~G~K~~~ael~GiP~~iiiG~k~~~~~~v~vr~R~~~~   80 (94)
T cd00861           2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD-RNERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGE   80 (94)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEC-CCCHHHHHHHHHHHCCCCEEEEECCCCHHCCEEEEEECCCCC
T ss_conf             4999997489988999999999999988798999987-997277999999974998799990662117999999978995


Q ss_pred             EEEEECCCH
Q ss_conf             643311201
Q gi|254780928|r  455 ELSREIKNN  463 (496)
Q Consensus       455 q~~~~~~~~  463 (496)
T Consensus        81 ~~~v~~~~~   89 (94)
T cd00861          81 KEEISIDEL   89 (94)
T ss_pred             EEEECHHHH
T ss_conf             689719999