HHsearch alignment for GI: 254780928 and conserved domain: cd00861
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.22 E-value=2.2e-10 Score=86.63 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=71.1
Q ss_pred CEEEEEEECC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCC
Q ss_conf 7148998269-768999999999999987983999718999988999999877998999988728748818997878883
Q gi|254780928|r 376 GPVLITTMDH-DSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGK 454 (496)
Q Consensus 376 ~~v~V~~~~~-~~~~~~~~~~ia~~Lr~~Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v~vK~l~~g~ 454 (496)
T Consensus 2 ~qv~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~Dd-r~~~~G~K~~~ael~GiP~~iiiG~k~~~~~~v~vr~R~~~~ 80 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD-RNERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGE 80 (94)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEC-CCCHHHHHHHHHHHCCCCEEEEECCCCHHCCEEEEEECCCCC
T ss_conf 4999997489988999999999999988798999987-997277999999974998799990662117999999978995
Q ss_pred EEEEECCCH
Q ss_conf 643311201
Q gi|254780928|r 455 ELSREIKNN 463 (496)
Q Consensus 455 q~~~~~~~~ 463 (496)
T Consensus 81 ~~~v~~~~~ 89 (94)
T cd00861 81 KEEISIDEL 89 (94)
T ss_pred EEEECHHHH
T ss_conf 689719999