HHsearch alignment for GI: 254780928 and conserved domain: cd00862
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=99.11 E-value=4.6e-09 Score=78.04 Aligned_cols=109 Identities=22% Similarity=0.282 Sum_probs=88.3
Q ss_pred CCCCCCCCEEEEEEECCC----HHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCC
Q ss_conf 766555771489982697----6899999999999998798399971899998899999987799899998872874881
Q gi|254780928|r 369 TNNIKEMGPVLITTMDHD----SDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGM 444 (496)
Q Consensus 369 ~~~~~~~~~v~V~~~~~~----~~~~~~~~~ia~~Lr~~Gi~~e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~ 444 (496)
T Consensus 4 lPP~iAP~QVVIiPi~~k~~~~~~v~~~~~~i~~~L~~~~iRv~iD~rd~~~pG~K~~~wE~kGVPiRIEIGprDle~~~ 83 (202)
T cd00862 4 LPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDLEKNT 83 (202)
T ss_pred CCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHHHCCC
T ss_conf 68420585499997348723289999999999999986798899977878688888899998089779998715863791
Q ss_pred EEEEECCCCCEEEEECCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHC
Q ss_conf 899787888364331120144320233510307999999999999864204
Q gi|254780928|r 445 LQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQENKEE 495 (496)
Q Consensus 445 v~vK~l~~g~q~~~~~~~~~~~~~~~~~q~~v~~~~l~~~~~~~l~~~~~~ 495 (496)
T Consensus 84 v~v~rRD~~~K------------------~~v~~~el~~~i~~~L~~iq~~ 116 (202)
T cd00862 84 VVIVRRDTGEK------------------KTVPLAELVEKVPELLDEIQED 116 (202)
T ss_pred EEEEEECCCCE------------------EEEEHHHHHHHHHHHHHHHHHH
T ss_conf 89999179957------------------8978899999999999999999