HHsearch alignment for GI: 254780928 and conserved domain: cd02426
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=98.98 E-value=8.5e-09 Score=76.28 Aligned_cols=99 Identities=18% Similarity=0.181 Sum_probs=79.3
Q ss_pred CCCEEEEEEECCC-HHHHHHHHHHHHHHHHCCCEE--EEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCCEEEEEC
Q ss_conf 5771489982697-689999999999999879839--9971899998899999987799899998872874881899787
Q gi|254780928|r 374 EMGPVLITTMDHD-SDSLSKYQMYTQMLRTAGIRA--EMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDL 450 (496)
Q Consensus 374 ~~~~v~V~~~~~~-~~~~~~~~~ia~~Lr~~Gi~~--e~~~~~~~sl~~~~~~A~~~g~~~viiig~~e~~~~~v~vK~l 450 (496)
T Consensus 26 AP~Kvai~~~~~~~~eL~~~a~~l~~~L~~~gi~v~~~~~~d~~~sIGkrY~r~DeiGtP~citvD~~TLedgtVtlR~R 105 (128)
T cd02426 26 APYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLFTLLISEQTLENGLLQLRSR 105 (128)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEC
T ss_conf 77179997036881888999999999998739943546354543478898877664288479997787434795898854
Q ss_pred CCCCEEEEECCCHHHHHHCCCCCEEECHHHHHHHHHHHHH
Q ss_conf 8883643311201443202335103079999999999998
Q gi|254780928|r 451 AKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQ 490 (496)
Q Consensus 451 ~~g~q~~~~~~~~~~~~~~~~~q~~v~~~~l~~~~~~~l~ 490 (496)
T Consensus 106 DT~~------------------QerI~I~dl~~yl~~~i~ 127 (128)
T cd02426 106 DTTL------------------KETIHISDLPDYLLRYIA 127 (128)
T ss_pred CCCH------------------HEEEEHHHHHHHHHHHHC
T ss_conf 7602------------------135769998999999863