HHsearch alignment for GI: 254780928 and conserved domain: pfam00152
>pfam00152 tRNA-synt_2 tRNA synthetases class II (D, K and N).
Probab=98.48 E-value=1.8e-06 Score=61.14 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 68999999999999999985984801652022887520267554333221689869998899988883899999995112
Q gi|254780928|r 21 KEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFD 100 (496)
Q Consensus 21 ~~~~~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~g~~l~LRpDlT~~~aR~~~~~~~ 100 (496)
T Consensus 20 ~~l~~Rs~i~~~iR~ff~~~~f~EV~TP~L~~~~-----~e~----~a~~F~~~~~~~~~~yL~~Spel~~k~ll~~g~- 89 (341)
T pfam00152 20 ANLKLRSKIIRAIREFLDERGFLEVETPILTKST-----PEG----GARDFLVPKFYAKEAYLPQSPQLYKQLLMVAGF- 89 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC-----CCC----CCCEEEECCCCCCCEEECCCHHHHHHHHHHCCC-
T ss_conf 9999999999999999998898998798200558-----987----776645026789823405488999999986588-
Q ss_pred HCCCCHHHHHHHHHHCCCCCCCC-CCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 05541123310133302587644-421111100012100002457889999999997
Q gi|254780928|r 101 TIVFPCRTYRIGPVFRNEKHGPG-RFRQFIQCDVDNVGSSAETADAEMCMMMADTLE 156 (496)
Q Consensus 101 ~~~~p~k~yy~g~vfR~e~p~~G-r~REf~Q~g~eiiG~~~~~~DaEii~l~~~~l~ 156 (496)
T Consensus 90 -----~rVfei~~~FR~E~~~t~rH~~EFtmlE~y~a~~d~--~--d~m~~~E~li~ 137 (341)
T pfam00152 90 -----DRVFQIAPCFRDEDLRTDRHPPEFTQLDLEMSFVDY--E--DVMDLTEDLIK 137 (341)
T ss_pred -----CCCEEEECHHCCCCCCCCCCCHHHHHHHHHHHCCCH--H--HHHHHHHHHHH
T ss_conf -----763797232027989886550778877675535999--9--99999999999