HHsearch alignment for GI: 254780928 and conserved domain: pfam00587

>pfam00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T). Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases.
Probab=99.96  E-value=8.9e-30  Score=212.53  Aligned_cols=155  Identities=28%  Similarity=0.511  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHH-HCC
Q ss_conf             9999999999999985984801652022887520267554333221689869998899988883899999995112-055
Q gi|254780928|r   25 IRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFD-TIV  103 (496)
Q Consensus        25 ~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~g~~l~LRpDlT~~~aR~~~~~~~-~~~  103 (496)
T Consensus         1 l~~~l~~~~~~~~~~~G~~~i~tP~l~~~~~~~~sg-~~~~~~~~my~~~d~~~~~l~Lrp~~~~~~~~~~~~~~~~~~~   79 (170)
T pfam00587         1 LRNALENFIRDLFKRYGYQEVDTPILEPKELWEGSG-HWDDYFDEMYRFKDRGGEELYLRPTAEVGITRLFKNEILSYRD   79 (170)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEECCEEEEHHHHHHCC-CCCCCHHHEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCCCC
T ss_conf             979999999999998599899999175678983447-7655753125673589976887325745888998862003235


Q ss_pred             CCHHHHHHHHHHCCC-CCCCC--CCCCCCCCCHHHHHCC--CHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHH
Q ss_conf             411233101333025-87644--4211111000121000--024578899999999975188877711303660558999
Q gi|254780928|r  104 FPCRTYRIGPVFRNE-KHGPG--RFRQFIQCDVDNVGSS--AETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGI  178 (496)
Q Consensus       104 ~p~k~yy~g~vfR~e-~p~~G--r~REf~Q~g~eiiG~~--~~~~DaEii~l~~~~l~~lgl~~~~~~I~in~~~il~~i  178 (496)
T Consensus        80 lP~r~~~~~~~fR~E~~~~~Gl~R~reF~q~d~~~~~~~e~s~~~~~e~~~~~~~~~~~lgl---~~~i~~~~~g~l~~~  156 (170)
T pfam00587        80 LPLKLYQIGPCFRYEARPRRGLGRVREFTQVDAEIFGTPEQSEEEDEELLKLAEEILQDLGL---PYRVVLNTRGDLGGY  156 (170)
T ss_pred             CCCEEECCCCCCCCCCCCCCCCCEEEEEEEECEEEEECCCHHHHHHHHHHHHHHHHHHHCCC---CEEEEECCCCCCCCH
T ss_conf             86013306530067777666774367889804799967004299999999999999998799---679997267778986


Q ss_pred             HHHHC
Q ss_conf             99832
Q gi|254780928|r  179 LEKIG  183 (496)
Q Consensus       179 l~~lg  183 (496)
T Consensus       157 ~~~~~  161 (170)
T pfam00587       157 ASKTG  161 (170)
T ss_pred             HHHCC
T ss_conf             78607