HHsearch alignment for GI: 254780928 and conserved domain: pfam00587
>pfam00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T). Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases.
Probab=99.96 E-value=8.9e-30 Score=212.53 Aligned_cols=155 Identities=28% Similarity=0.511 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHH-HCC
Q ss_conf 9999999999999985984801652022887520267554333221689869998899988883899999995112-055
Q gi|254780928|r 25 IRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFD-TIV 103 (496)
Q Consensus 25 ~~~~i~~~l~~~f~~~G~~~I~tP~lE~~~~~~~~~~~~~~~~k~~y~f~D~~g~~l~LRpDlT~~~aR~~~~~~~-~~~ 103 (496)
T Consensus 1 l~~~l~~~~~~~~~~~G~~~i~tP~l~~~~~~~~sg-~~~~~~~~my~~~d~~~~~l~Lrp~~~~~~~~~~~~~~~~~~~ 79 (170)
T pfam00587 1 LRNALENFIRDLFKRYGYQEVDTPILEPKELWEGSG-HWDDYFDEMYRFKDRGGEELYLRPTAEVGITRLFKNEILSYRD 79 (170)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCEEEEHHHHHHCC-CCCCCHHHEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCCCC
T ss_conf 979999999999998599899999175678983447-7655753125673589976887325745888998862003235
Q ss_pred CCHHHHHHHHHHCCC-CCCCC--CCCCCCCCCHHHHHCC--CHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHH
Q ss_conf 411233101333025-87644--4211111000121000--024578899999999975188877711303660558999
Q gi|254780928|r 104 FPCRTYRIGPVFRNE-KHGPG--RFRQFIQCDVDNVGSS--AETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGI 178 (496)
Q Consensus 104 ~p~k~yy~g~vfR~e-~p~~G--r~REf~Q~g~eiiG~~--~~~~DaEii~l~~~~l~~lgl~~~~~~I~in~~~il~~i 178 (496)
T Consensus 80 lP~r~~~~~~~fR~E~~~~~Gl~R~reF~q~d~~~~~~~e~s~~~~~e~~~~~~~~~~~lgl---~~~i~~~~~g~l~~~ 156 (170)
T pfam00587 80 LPLKLYQIGPCFRYEARPRRGLGRVREFTQVDAEIFGTPEQSEEEDEELLKLAEEILQDLGL---PYRVVLNTRGDLGGY 156 (170)
T ss_pred CCCEEECCCCCCCCCCCCCCCCCEEEEEEEECEEEEECCCHHHHHHHHHHHHHHHHHHHCCC---CEEEEECCCCCCCCH
T ss_conf 86013306530067777666774367889804799967004299999999999999998799---679997267778986
Q ss_pred HHHHC
Q ss_conf 99832
Q gi|254780928|r 179 LEKIG 183 (496)
Q Consensus 179 l~~lg 183 (496)
T Consensus 157 ~~~~~ 161 (170)
T pfam00587 157 ASKTG 161 (170)
T ss_pred HHHCC
T ss_conf 78607