HHsearch alignment for GI: 254780928 and conserved domain: pfam01409

>pfam01409 tRNA-synt_2d tRNA synthetases class II core domain (F). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain.
Probab=98.45  E-value=2.3e-06  Score=60.52  Aligned_cols=107  Identities=30%  Similarity=0.459  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEECCCHH----HHHHHHCCCCCCCCCCC---CEEEEEC-CCCCEEEECCCCHHHHHHHH
Q ss_conf             9999999999999998598480165202----28875202675543332---2168986-99988999888838999999
Q gi|254780928|r   24 RIRNRILDSIRNIYENYGFDPIETPLLE----YSDSLGKFLPDEDRPNK---GVFSLQD-DDGQWISLRYDLTAPLARYV   95 (496)
Q Consensus        24 ~~~~~i~~~l~~~f~~~G~~~I~tP~lE----~~~~~~~~~~~~~~~~k---~~y~f~D-~~g~~l~LRpDlT~~~aR~~   95 (496)
T Consensus        17 HPi~~~~~~i~~~f~~~GF~~~~g~eves~~~NFDaLn---~P~dHPaR~~~DTfy~~~~~~~~~~vLRtHTS~~q~r~l   93 (243)
T pfam01409        17 HPLTRVLEEIRDIFLSMGFEEVEGPEVESDFYNFDALN---IPQDHPARDMQDTFYLKKPLKARRLLLRTHTTPVQARTL   93 (243)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHC---CCCCCCCCCCCCEEEECCCCCCCCEEECCCCCHHHHHHH
T ss_conf             85999999999999877986876983564277777557---898898767676034336666768657687988999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             95112055411233101333025876444211111000121
Q gi|254780928|r   96 AENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNV  136 (496)
Q Consensus        96 ~~~~~~~~~p~k~yy~g~vfR~e~p~~Gr~REf~Q~g~eii  136 (496)
T Consensus        94 ~~~~---~~p~r~~~~grvyR~d~~DatH~~~FhQ~Eg~vv  131 (243)
T pfam01409        94 AEKN---KPPIKIFSIGRVFRRDQVDATHLPEFHQVEGLVV  131 (243)
T ss_pred             HHCC---CCCEEEECCCEEEECCCCCCCCCCEEEEEEEEEE
T ss_conf             7427---9984898143133258898431531057557896