HHsearch alignment for GI: 254780928 and conserved domain: pfam01409
>pfam01409 tRNA-synt_2d tRNA synthetases class II core domain (F). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain.
Probab=98.45 E-value=2.3e-06 Score=60.52 Aligned_cols=107 Identities=30% Similarity=0.459 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCHH----HHHHHHCCCCCCCCCCC---CEEEEEC-CCCCEEEECCCCHHHHHHHH
Q ss_conf 9999999999999998598480165202----28875202675543332---2168986-99988999888838999999
Q gi|254780928|r 24 RIRNRILDSIRNIYENYGFDPIETPLLE----YSDSLGKFLPDEDRPNK---GVFSLQD-DDGQWISLRYDLTAPLARYV 95 (496)
Q Consensus 24 ~~~~~i~~~l~~~f~~~G~~~I~tP~lE----~~~~~~~~~~~~~~~~k---~~y~f~D-~~g~~l~LRpDlT~~~aR~~ 95 (496)
T Consensus 17 HPi~~~~~~i~~~f~~~GF~~~~g~eves~~~NFDaLn---~P~dHPaR~~~DTfy~~~~~~~~~~vLRtHTS~~q~r~l 93 (243)
T pfam01409 17 HPLTRVLEEIRDIFLSMGFEEVEGPEVESDFYNFDALN---IPQDHPARDMQDTFYLKKPLKARRLLLRTHTTPVQARTL 93 (243)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHC---CCCCCCCCCCCCEEEECCCCCCCCEEECCCCCHHHHHHH
T ss_conf 85999999999999877986876983564277777557---898898767676034336666768657687988999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 95112055411233101333025876444211111000121
Q gi|254780928|r 96 AENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNV 136 (496)
Q Consensus 96 ~~~~~~~~~p~k~yy~g~vfR~e~p~~Gr~REf~Q~g~eii 136 (496)
T Consensus 94 ~~~~---~~p~r~~~~grvyR~d~~DatH~~~FhQ~Eg~vv 131 (243)
T pfam01409 94 AEKN---KPPIKIFSIGRVFRRDQVDATHLPEFHQVEGLVV 131 (243)
T ss_pred HHCC---CCCEEEECCCEEEECCCCCCCCCCEEEEEEEEEE
T ss_conf 7427---9984898143133258898431531057557896