RPSBLAST alignment of GI: 254780928 and protein with PDBid: 1nj8

>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Length = 459

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 16/156 (10%)

Query: 11  LPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGV 70
           LP GF        +IR    + IRN+ +  G D    P+L   D L K           V
Sbjct: 34  LPYGF--------KIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEV 85

Query: 71  FSL----QDDDGQWISLRYDLTAPLARYVAEN-FDTIVFPCRTYRIGPVFRNEKHGPG-- 123
           + +    +      ++LR     P+   +          P + Y+I   FR E       
Sbjct: 86  YWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPL 145

Query: 124 -RFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAV 158
            R R+ +     +   S +              +  
Sbjct: 146 IRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKF 181