RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780928|ref|YP_003065341.1| histidyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (496 letters) >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Length = 465 Score = 284 bits (728), Expect = 3e-77 Identities = 147/508 (28%), Positives = 221/508 (43%), Gaps = 66/508 (12%) Query: 1 MGKKTKLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFL 60 M K K+ P GF + E R+ +LD+IR +YE+YGF PIETP +E + L Sbjct: 4 MAKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG 63 Query: 61 PDEDRPNKGVFSLQ------------DDDGQWISLRYDLTAPLARYVAENFDTIVFPCRT 108 D G+ + D + +L++D T PLA Y+A + + + FP Sbjct: 64 NQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFAR 123 Query: 109 YRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSA--ETADAEMCMMMADTLEAVGIKRNDYH 166 Y++ VFR E+ GRFRQF QCD+D VG DA+M ++ + EAV I D+ Sbjct: 124 YQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIG--DFV 181 Query: 167 IGINNRKILDGILEKIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDF 226 I INNRK+L G + + + + + ID L+K G VKL L Sbjct: 182 IRINNRKVLTGFFQSLNISETQIKSC----ISIIDNLEKIGEAKVKLEL----------- 226 Query: 227 TKGANLTSEQIDIMVSFLSI-----DLEKSMHELYELVKGTIAGEKGFNELVVISELVRK 281 + + EQ ++ F+ I D+ + L + + + G +EL + VR Sbjct: 227 -EKEGINPEQTQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRN 285 Query: 282 SGYNSNRIKISSTIVRGLEYYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRF 341 G R I I RGL YYTG VYE L GS+ GGRY+ LV F Sbjct: 286 LGVPDKRFCIDLAIARGLNYYTGTVYETTLI--------GHEALGSICSGGRYEELVGTF 337 Query: 342 KGQNVPATGFSIGISRLIVALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLR 401 G+ +P G SIG++RLI L V++ M + + Y +Q LR Sbjct: 338 IGEKMPGVGISIGLTRLISRLLKAGILNTLPPTPAQVVVVNM--QDELMPTYLKVSQQLR 395 Query: 402 TAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIK 461 AG+ + G Q + AD++ +I G E + +KDL G+ Sbjct: 396 QAGLNVITNFE-KRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGE------- 447 Query: 462 NNESWREARVAQITIPISELVSTVKKIL 489 Q+ + +++L +K+ L Sbjct: 448 -----------QVEVALADLAEEIKRRL 464 >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural genomics; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hrj_A* 3hri_A Length = 456 Score = 278 bits (711), Expect = 2e-75 Identities = 107/481 (22%), Positives = 195/481 (40%), Gaps = 48/481 (9%) Query: 3 KKTKLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPD 62 +K + E +G D P + +R R + D + +GF+ + P+LE + + + Sbjct: 23 QKNMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGE 82 Query: 63 EDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGP 122 E + +F+ G ++LR ++T LAR + +++ P + Y I +R E Sbjct: 83 E--ITEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITR 140 Query: 123 GRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILEKI 182 GR R+ Q ++D VG + +A+ E+ + ++G+ D I +N+RK+L ++E+ Sbjct: 141 GRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGIKVNSRKVLQTVVEQA 200 Query: 183 GLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVS 242 G+ D V +DK++K + V+ L + + L+ + ID + Sbjct: 201 GVTSDKFAP----VCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQ 256 Query: 243 FLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYY 302 + + E + G + + +++VRGL YY Sbjct: 257 RVGEEHEAVKELRQFFEQVEAYG-------------------YGDWVLFDASVVRGLAYY 297 Query: 303 TGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKG-QNVPATGFSIGISRLIVA 361 TG V+E + F ++ GGGRYD L++ + +P GF G ++ Sbjct: 298 TGIVFEGF---------DREGKFRALCGGGRYDNLLTTYGSPTPIPCAGFGFGDCVIVEL 348 Query: 362 LKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQL 421 L+ + + V+I D + LR AG A++ L K Sbjct: 349 LQEKRLLPDIPHVVDDVVIPF---DESMRPHALAVLRRLRDAGRSADIILD-KKKVVQAF 404 Query: 422 KYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISEL 481 YADR A++ E RG +Q+K L +G +E E +P+ L Sbjct: 405 NYADRVGAVRAVLVAPEEWERGEVQVKMLREGTG--KEEGGAE-------RGFAVPLDRL 455 Query: 482 V 482 V Sbjct: 456 V 456 >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Length = 400 Score = 239 bits (611), Expect = 9e-64 Identities = 94/436 (21%), Positives = 171/436 (39%), Gaps = 46/436 (10%) Query: 1 MGKKTKLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFL 60 M K E P G D + + + I D + +G+D IETP LEY +++G Sbjct: 4 MSKPFMF--EKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVS 61 Query: 61 PDEDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKH 120 D+ +F L D G + LR D+TAP+AR VA + +P R V+R +++ Sbjct: 62 AILDQQ---LFKLLDQQGNTLVLRPDMTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQN 118 Query: 121 GPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILE 180 G+ +F Q V+ +G +AD E+ +M L+ G +++ + I + ++ +L Sbjct: 119 EGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRAG--LSEFKVAIGHVGYVNALLM 176 Query: 181 KIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIM 240 + + R R + + + G + L D + Sbjct: 177 DVVGNEQRADRLR----RFLYEKNYVGYREHVKSLNLSTID---------------KSRL 217 Query: 241 VSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLE 300 ++ LS+ ++ E + T G+ E+ + E++ G S +K T+V + Sbjct: 218 MNLLSLRGGRAAIEEARGLIQTEKGKTALAEMTKLYEVLESYGA-SEYVKFDLTLVLHMS 276 Query: 301 YYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIV 360 YYTG V+E + + GGRYD L+S+F + ATGF + I L+ Sbjct: 277 YYTGVVFEGY----------GNRLGVPLCSGGRYDELLSKF-HRPAQATGFGVRIDLLVE 325 Query: 361 ALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQ 420 AL S + + I + + + + R G + + Sbjct: 326 ALNGEIISNGHEQ----TCILFSN---ERRFEAIELARKKRANGEAVVLQDLAGVTD-VD 377 Query: 421 LKYADRRNCPLAIIQG 436 ++ ++ I Sbjct: 378 AMSSNYQDVIYCIGTA 393 >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Length = 420 Score = 235 bits (600), Expect = 2e-62 Identities = 95/481 (19%), Positives = 179/481 (37%), Gaps = 66/481 (13%) Query: 10 ELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDE-DRPNK 68 ++PRG D ++ + I + + + Y + I TP+ E +D + + D D K Sbjct: 3 KIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQK 62 Query: 69 GVFSLQDDDGQWISLRYDLTAPLARYVAEN--FDTIVFPCRTYRIGPVFRNEKHGPGRFR 126 +++ +D + I+LR + TA + R E+ P + Y GP+FR E+ GR+R Sbjct: 63 EMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYR 122 Query: 127 QFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILEKIGLHG 186 QF Q V+ +G+ + DAE+ M+ ++ G+K I + + Sbjct: 123 QFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVKH 182 Query: 187 DDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVSFLSI 246 + + D + +++L + D + K A ++ ++ Sbjct: 183 FEPVIHEFC----SDCQSRLHTDPMRILDCKV--DRDKEAIKTAPRITDFLNEESKAYYE 236 Query: 247 DLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTGCV 306 ++ + +L +VRGL+YYT Sbjct: 237 QVKAYLDDLG------------------------------IPYTEDPNLVRGLDYYTHTA 266 Query: 307 YEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALKSLE 366 +E +M+ ++ GGGRY+GL+ G + GF++ I RL++AL+ Sbjct: 267 FEL-----MMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFALSIERLLLALEEEG 321 Query: 367 SSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADR 426 + + + + + LR GI+A+ + Q+K ADR Sbjct: 322 ---IELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDY-LQRKIKGQMKQADR 377 Query: 427 RNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVK 486 I+ G E + +K++ G+ TI + LV K Sbjct: 378 LGAKFTIVIGDQELENNKIDVKNMTTGE------------------SETIELDALVEYFK 419 Query: 487 K 487 K Sbjct: 420 K 420 >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Length = 421 Score = 191 bits (486), Expect = 2e-49 Identities = 101/485 (20%), Positives = 185/485 (38%), Gaps = 67/485 (13%) Query: 7 LRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFL-PDEDR 65 + A RG D KE+R+ RI+ + R + E G + TP+ E + K + D Sbjct: 1 MTARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDI 60 Query: 66 PNKGVFSLQDDDGQWISLRYDLTAPLARYVAENF-DTIVFPCRTYRIGPVFRNEKHGPGR 124 K +F+ QD G+ ++LR + TA + R E+ P R + GP+FR E+ GR Sbjct: 61 VRKEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGR 120 Query: 125 FRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILEKIGL 184 +RQF Q + + +GS DAE +++ + L+ +G++R + Sbjct: 121 YRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAY-- 178 Query: 185 HGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVSFL 244 ++ + D ++ +++L + D + G + + Sbjct: 179 --LREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAH 236 Query: 245 SIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTG 304 ++E+ + L ++ +VRGL+YY Sbjct: 237 LKEVERHLERLSV------------------------------PYELEPALVRGLDYYVR 266 Query: 305 CVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALKS 364 +E ++ ++GGGGRYDGL G VP GF+ G+ R+ +AL++ Sbjct: 267 TAFEVHH--------EEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGVERVALALEA 318 Query: 365 LESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYA 424 K + +++++ + LR +RAE L + L+ A Sbjct: 319 EGFGLPEEKGPDLY---LIPLTEEAVAEAFYLAEALR-PRLRAEYALA-PRKPAKGLEEA 373 Query: 425 DRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVST 484 +R A G E G + +K LA G+ Q+ + E+ Sbjct: 374 LKRGAAFAGFLGEDELRAGEVTLKRLATGE------------------QVRLSREEVPGY 415 Query: 485 VKKIL 489 + + L Sbjct: 416 LLQAL 420 >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Length = 423 Score = 189 bits (480), Expect = 1e-48 Identities = 101/486 (20%), Positives = 178/486 (36%), Gaps = 78/486 (16%) Query: 12 PRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDE-DRPNKGV 70 RG D E I RI +++N+ +YG+ I P++E + + + + D K + Sbjct: 7 IRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEM 66 Query: 71 FSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQ 130 ++ +D +G ++LR + TA R E+ R + IGP+FR+E+ GR+RQF Q Sbjct: 67 YTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQ 126 Query: 131 CDVDNVGSSAETADAEMCMMMADT-----LEAVGIKRNDYHIGINNRKILDGILEKIGLH 185 + G DAE+ M+ A + + + R L Sbjct: 127 LGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQ 186 Query: 186 GDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVSFLS 245 +KL+E + L Sbjct: 187 HKEKLDEDCKRRMYTNPLRV---------------------------------------- 206 Query: 246 IDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTGC 305 +D + + + + L + ++ +VRGL+YY Sbjct: 207 LDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRT 266 Query: 306 VYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALKSL 365 V+E V N G+V GGRYDGLV + G+ PA GF++G+ RL++ ++++ Sbjct: 267 VFE-----WVTNSLGS---QGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAV 318 Query: 366 ESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLR--TAGIRAEMFLGSSKNFGNQLKY 423 K V I + +D+ S + LR G++ NF Q Sbjct: 319 N---PEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNH-GGGNFKKQFAR 374 Query: 424 ADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVS 483 AD+ +A++ G E + G +KDL G+ Q + + + Sbjct: 375 ADKWGARVAVVLGESEVANGTAVVKDLRSGE------------------QTAVAQDSVAA 416 Query: 484 TVKKIL 489 ++ +L Sbjct: 417 HLRTLL 422 >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Length = 434 Score = 174 bits (442), Expect = 3e-44 Identities = 109/482 (22%), Positives = 187/482 (38%), Gaps = 61/482 (12%) Query: 6 KLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDR 65 +L+ E RGF D +++ + I + E +GF I+ P LEY D + Sbjct: 3 RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRI--KSGEE 60 Query: 66 PNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRF 125 + +S D G+ ++L + T R V D P R Y V+R E+ GR+ Sbjct: 61 LLQQTYSFVDKGGREVTLIPEATPSTVRMVTSRKDLQ-RPLRWYSFPKVWRYEEPQAGRY 119 Query: 126 RQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILEKIGLH 185 R+ Q + D GS + ADAE+ + + L+ +G+ ++ Y I IN+RKI++ I+ + Sbjct: 120 REHYQFNADIFGSDSPEADAEVIALASSILDRLGL-QDIYEIRINSRKIMEEIIGGMTSS 178 Query: 186 GDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVSFLS 245 + + L S I + Sbjct: 179 DPFSVFSIIDRY-----------------------HKISREEFVDQLRSAGIGEDGVSMI 215 Query: 246 IDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTGC 305 DL + E+ + T + + + +L+ G + + +IVRGL YYTG Sbjct: 216 ADLCSGTRGIDEMARITGKSSEEIARMAAVEDLLASYGVKNV--RYDFSIVRGLSYYTGI 273 Query: 306 VYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALKSL 365 V+E + F ++ GGGRYD L S G++VPA GF +G + + + LK Sbjct: 274 VFE---------AYDRSGQFRAILGGGRYDNLASLMSGESVPAVGFGMGDAVISLLLKRE 324 Query: 366 ESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYAD 425 N + + S Y++ LR G+ + + + QLKYA Sbjct: 325 ----NVQIPREKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIM-ERGLSAQLKYAS 379 Query: 426 RRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTV 485 A+I G + RG++ I+++ G Q + + +V + Sbjct: 380 AIGADFAVIFGERDLERGVVTIRNMYTGS------------------QENVGLDSVVEHL 421 Query: 486 KK 487 Sbjct: 422 IS 423 >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, allosteric, evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Length = 344 Score = 167 bits (422), Expect = 7e-42 Identities = 75/372 (20%), Positives = 136/372 (36%), Gaps = 43/372 (11%) Query: 1 MGKKTKLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFL 60 G+ K+ LP A+ +++ +I +R ++ + + P EY+ Sbjct: 14 EGRMEKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALE 73 Query: 61 PD-EDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEK 119 + + + +F +GQ I+LRYD T PL R ++ D+ R G +FR EK Sbjct: 74 SNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIKDS--TSARYSYFGKIFRKEK 131 Query: 120 HGPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGIL 179 GR + Q ++ G SA+ ++ E+ + +E + N I + K Sbjct: 132 RHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQ--LGLNKTVFEIGSAKF----- 184 Query: 180 EKIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDI 239 +RL L L K L G +F+K ++I I Sbjct: 185 -----------FQRLCQLADGSTELLTELLLKKDLSGLNAFIEKNNFSKELRGLLKEIFI 233 Query: 240 MVSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGL 299 ++ + + L+ ++ +L I I +V + Sbjct: 234 TNELSRLENLVTNTKDDVLISSFDQLKEFSEKL-----------SMIKPIIIDLGMVPKM 282 Query: 300 EYYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLI 359 +YYT +++A + GGRYD L+S F + A GF + ++ Sbjct: 283 DYYTDLMFKAYS----------SAANQPILSGGRYDQLLSNF-QEEAFAIGFCCHMDTIL 331 Query: 360 VALKSLESSTNN 371 AL+ E +N Sbjct: 332 KALERQELEEDN 343 >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Length = 275 Score = 147 bits (371), Expect = 6e-36 Identities = 43/324 (13%), Positives = 96/324 (29%), Gaps = 64/324 (19%) Query: 32 SIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRYDLTAPL 91 S + GF P P LE ++ F D G S+R D T + Sbjct: 11 SFYSKATKKGFSPFFVPALEKAEEP----------AGNFF--LDRKGNLFSIREDFTKTV 58 Query: 92 ARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAETADAEMCMMM 151 + + + V+R Q ++ V ++ E+ ++ Sbjct: 59 LNHRKRYSPD--SQIKVWYADFVYRYS---GSDLVAEYQLGLEKVPRNSLDDSLEVLEII 113 Query: 152 ADTLEAVGIKRNDYHIGINNRKILDGILEKIGLHGDDKLNERLIVLRAIDKLDKFGLQGV 211 ++ + I + + + +L++I +K VL ID + ++ Sbjct: 114 VESASE--FFEGPVIVEIGHTGVYEDLLKEIPKDLHEK------VLNLIDTKNLAEIE-- 163 Query: 212 KLLLGEGRTDNSGDFTKGANLTSEQIDIMVSFLSIDLEKSMHELYELVKGTIAGEKGFNE 271 + + +++ ++ + +L + Sbjct: 164 -------------FLSHMKKIDLSRVEKIIEDSIYRRSPEHLKTMDLPL------SVRED 204 Query: 272 LVVISELVRKSGYNSNRIKISSTIVRGLEYYTGCVYEAILGFPVMNEKQKPVVFGSVGGG 331 L+ S + + + + ++I T+ R +E Y G ++ + V G Sbjct: 205 LLSASSFL-QEKFPTVSVEIDLTLARTIEEYCGLIFTIYD-----TSSSRL-----VAAG 253 Query: 332 GRYDGLVSRFKGQNVPATGFSIGI 355 G Y + G SI + Sbjct: 254 GEYTVNGEK-------GVGGSIFL 270 >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, Pro(Cys)RS, translation, ATP-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Length = 518 Score = 87.8 bits (217), Expect = 5e-18 Identities = 25/189 (13%), Positives = 54/189 (28%), Gaps = 19/189 (10%) Query: 7 LRAEL------PRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFL 60 AEL +G + N I+ Y G I P + L K Sbjct: 33 DAAELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKES 92 Query: 61 PDEDRPNKGVFSLQ----DDDGQWISLRYDLTAPLARYVAEN-FDTIVFPCRTYRIGPVF 115 F ++ + ++LR + ++ P + ++ +F Sbjct: 93 DHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIF 152 Query: 116 RNEKHGP---GRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNR 172 R+E R R+ + ++AE A +++ + + Sbjct: 153 RHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDEL-----CFKGQ 207 Query: 173 KILDGILEK 181 K+ ++ Sbjct: 208 KLRRVCWDR 216 Score = 62.8 bits (152), Expect = 2e-10 Identities = 32/258 (12%), Positives = 77/258 (29%), Gaps = 19/258 (7%) Query: 247 DLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYTGCV 306 D + + ++++ + E F + + + G T + Sbjct: 182 DAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVMPCGRVLQTAGI 241 Query: 307 YE--------AILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRL 358 + + + + G R G + I+ + Sbjct: 242 HNLGQRFSSTFDILYANKANESVHPYLTCAGISTRVLACALSIHGDS-GGLVLPPLIAPI 300 Query: 359 IVALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFG 418 V + + N +E ++ ++ ++ + G+R + SK+ G Sbjct: 301 HVVIIPIGCGKKNNQESDQQVLGKVN---------EIADTLKSKLGLRVSIDDDFSKSMG 351 Query: 419 NQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPI 478 ++L Y + + PL I G + + G + GK+ R I E + + Sbjct: 352 DKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEVMKVSS-HTTENHE 410 Query: 479 SELVSTVKKILQENKEEI 496 + + +K L K + Sbjct: 411 LVVKNVIKDELDAYKARL 428 >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Length = 401 Score = 82.8 bits (204), Expect = 2e-16 Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 29/196 (14%) Query: 11 LPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEY------SDSLGKFLPDED 64 G+ I + +R+ + Y + ++ P + + + Sbjct: 26 HNDGW--------TIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDA-- 75 Query: 65 RPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEK----H 120 +F+ ++ ++ + + + P R G RNE H Sbjct: 76 -----MFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLH 130 Query: 121 GPGRFRQFIQCDVDNVGSS--AETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGI 178 G R R F Q D + ++ D G + + ++ R Sbjct: 131 GLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFE--KIVVKLSTRPEKRIG 188 Query: 179 LEKIGLHGDDKLNERL 194 +++ + L L Sbjct: 189 SDEMWDRAEADLAVAL 204 Score = 63.2 bits (153), Expect = 1e-10 Identities = 28/205 (13%), Positives = 61/205 (29%), Gaps = 22/205 (10%) Query: 290 KISSTIVRGLEYYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPAT 349 I G + G E L + Q V R + Sbjct: 208 NIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPV 267 Query: 350 GFS---IGISRLIVALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIR 406 +G + + + E + + PV + M+ TQ L AGIR Sbjct: 268 MIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIR 327 Query: 407 AEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESW 466 + L ++ G +++ R P ++ G E G + ++ Sbjct: 328 VKADL-RNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKD------------ 374 Query: 467 REARVAQITIPISELVSTVKKILQE 491 ++ ++E++ +++ ++ Sbjct: 375 ------LGSMDVNEVIEKLQQEIRS 393 >2zin_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, pyrrolysine, ATP analogue, non-natural amino acid, unnatural amino acid, ATP-binding; HET: ANP LBY; 1.79A {Methanosarcina mazei} PDB: 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* Length = 291 Score = 81.7 bits (201), Expect = 3e-16 Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 9/165 (5%) Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWIS 82 ++ I + + GF I++P+L + + + D D + + Sbjct: 77 ENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTE---LSKQIFRVDKNFC 133 Query: 83 LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAET 142 LR L L Y+ + + P + + IGP +R E G +F + +GS Sbjct: 134 LRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTR 193 Query: 143 ADAEMCMMMADTLEAVGIK----RNDYHIGINNRKILDGILEKIG 183 + E ++ D L +GI + + + ++ G LE Sbjct: 194 ENLE--SIITDFLNHLGIDFKIVGDSCMVYGDTLDVMHGDLELSS 236 >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Length = 288 Score = 72.9 bits (178), Expect = 2e-13 Identities = 32/156 (20%), Positives = 48/156 (30%), Gaps = 3/156 (1%) Query: 7 LRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRP 66 + K + + + GF + TP + +L K ED P Sbjct: 54 MSQGKRHLEQLRTVKHRPALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHP 113 Query: 67 NKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFR 126 D LR L L E P R + IG +R E G Sbjct: 114 LFSQVFWLDGK---KCLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRKESQGAQHLN 170 Query: 127 QFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKR 162 +F ++ +G+ E + M LEA GI+ Sbjct: 171 EFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIRE 206 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 70.0 bits (171), Expect = 1e-12 Identities = 70/452 (15%), Positives = 136/452 (30%), Gaps = 184/452 (40%) Query: 30 LDSIRNIYENYGFDPIETPLLEYSDS-LGKFLPDEDRPNKGVFSLQDDDGQWISLR---- 84 + +R++Y+ Y + L+++S L + + K VF+ + +W+ Sbjct: 170 FEELRDLYQTYH--VLVGDLIKFSAETLSELIRTTLDAEK-VFTQGLNILEWLENPSNTP 226 Query: 85 ---YDLTAP----------LARY-VAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQ 130 Y L+ P LA Y V + +G PG R +++ Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVT---------AKL--LG------FT-PGELRSYLK 268 Query: 131 CDVDNVGSSAE-----TADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILEKIGL- 184 G++ TA A + D+ E + ++ RK + +L IG+ Sbjct: 269 ------GATGHSQGLVTAVA---IAETDSWE-------SFF--VSVRKAIT-VLFFIGVR 309 Query: 185 --------------------HGD---------------------DKLNERL-----IVLR 198 + + +K N L + + Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369 Query: 199 AIDKLDKF---G----LQGVKLLLGEGRTDNSGD-----FTKGANLTSEQIDIMVSFLSI 246 ++ G L G+ L L + + + D F++ ++ FL + Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE------RKLKFSNRFLPV 423 Query: 247 D-------LEKSMHELYELVKGTIAGEKGFNELVVI--SEL------------VRKSGYN 285 L + +L+ + V ++ +R + Sbjct: 424 ASPFHSHLLVPA----SDLINKDLVKNN-----VSFNAKDIQIPVYDTFDGSDLRVLSGS 474 Query: 286 SNRIKISSTIVRGLEYYTGCV-YEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQ 344 IS IV + V +E F + + FG GG L R Sbjct: 475 -----ISERIVDCI--IRLPVKWETTTQFKATH----ILDFGP-GGASGLGVLTHR---- 518 Query: 345 NVPATGFSIGISRLIVALKSLESSTNNIKEMG 376 N TG R+IVA +L+ + ++ + G Sbjct: 519 NKDGTGV-----RVIVA-GTLDINPDD--DYG 542 Score = 60.3 bits (146), Expect = 8e-10 Identities = 95/510 (18%), Positives = 150/510 (29%), Gaps = 206/510 (40%) Query: 65 RPNKGVFSLQDDDGQWISLRYDLTAPLARYVA-----ENFDTIVFPCRTYRIGPVFRNEK 119 RP +L G SL + L P A + E F+ I P T G +E Sbjct: 7 RP----LTLSH--G---SLEHVLLVPTASFFIASQLQEQFNKI-LPEPTE--GFAADDEP 54 Query: 120 HGP----GRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKIL 175 P G+F ++ + + L ++ L Sbjct: 55 TTPAELVGKFLGYV----------SSLVEPSKVGQFDQVLNLC---LTEFE-----NCYL 96 Query: 176 DGILEKI-----GLHGDDK--LNERLIVLRA--------IDKLDK--------------- 205 +G I L ++ L + +++ DK Sbjct: 97 EG--NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154 Query: 206 -----FGLQGVKLLLGEGRTDNSGD-FTKGANLTSEQIDIMVSFLSIDLEKSMHE-LYEL 258 FG QG N+ D F + +L + DL K E L EL Sbjct: 155 QLVAIFGGQG-----------NTDDYFEELRDL----YQTYHVLVG-DLIKFSAETLSEL 198 Query: 259 VKGTIAGEK----GFNELVVISELVRKSGYNSNRIK-------ISSTI---VRGL----E 300 ++ T+ EK G N ++ L N +S I + G+ Sbjct: 199 IRTTLDAEKVFTQGLN---ILEWL-------ENPSNTPDKDYLLSIPISCPLIGVIQLAH 248 Query: 301 YYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIV 360 Y +LGF P G L S KG ATG S G+ + Sbjct: 249 YVVTA---KLLGF-------TP---------GE---LRSYLKG----ATGHSQGL---VT 279 Query: 361 ALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGS-SKNFGN 419 A V I +DS + + +R A I F+G Sbjct: 280 A----------------VAIAE----TDSWESF--FVS-VRKA-ITVLFFIGVRC----- 310 Query: 420 QLKYADRRNCPLAIIQGTGERSRG----MLQIKDLAKGKELSREI-KNNESWREARVAQI 474 Y + P +I++ + E + G ML I +L + +++ + K N + Q+ Sbjct: 311 YEAYP-NTSLPPSILEDSLENNEGVPSPMLSISNLTQ-EQVQDYVNKTNSHLPAGK--QV 366 Query: 475 TI--------------PIS--ELVSTVKKI 488 I P S L T++K Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396 Score = 35.3 bits (81), Expect = 0.034 Identities = 27/177 (15%), Positives = 55/177 (31%), Gaps = 61/177 (34%) Query: 337 LVSRFKGQNVPATGF--------SIGISRLI--VALKSLESS---TNNIKEMGPVLITTM 383 LV +F G+ +G + + L E+ N+I L + Sbjct: 60 LVGKF-------LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH----ALAAKL 108 Query: 384 DHDSD-SLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQ---LKYADRRNCPLAII---QG 436 ++D +L K + ++++ I A + + + + N L I QG Sbjct: 109 LQENDTTLVKTK---ELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164 Query: 437 TGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIP--ISELVSTVKKILQE 491 + + EL R++ T + +L+ + L E Sbjct: 165 NTD---DYFE--------EL-RDLYQ------------TYHVLVGDLIKFSAETLSE 197 Score = 31.5 bits (71), Expect = 0.52 Identities = 53/254 (20%), Positives = 89/254 (35%), Gaps = 91/254 (35%) Query: 244 LSIDL---EKSMHELYELVKGTIAGEKGFNEL-VVISELVRKS----GYNSNRIKISSTI 295 + +DL K+ +++ GF+ L +VI+ V + G RI+ Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR----- 1685 Query: 296 VRGLEYYTGCVYEAILG--------FPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVP 347 E Y+ ++E I+ F +NE F S GL+S Sbjct: 1686 ----ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS------EKGLLS-------- 1727 Query: 348 ATGFSIGISRLIVALKSLESST-NNIKEMG--PVLITTMDHD----------SD-----S 389 AT F+ AL +E + ++K G P T H +D S Sbjct: 1728 ATQFTQP------ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES 1781 Query: 390 LSKYQMYTQM-LRTAGIRAEMFLGSSKNFG---------------NQLKYADRRNCPLAI 433 L + Y M ++ A R E LG S N+G L+Y + Sbjct: 1782 LVEVVFYRGMTMQVAVPRDE--LGRS-NYGMIAINPGRVAASFSQEALQY---------V 1829 Query: 434 IQGTGERSRGMLQI 447 ++ G+R+ +++I Sbjct: 1830 VERVGKRTGWLVEI 1843 >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Length = 477 Score = 50.8 bits (121), Expect = 8e-07 Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 15/148 (10%) Query: 11 LPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGV 70 P G+ I I + +++ G PL L K + + + Sbjct: 40 RPYGY--------AIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPEL 91 Query: 71 FSLQDDDGQWISLRYDLTAPLARYVAENFDTIV-----FPCRTYRIGPVFRNEK--HGPG 123 + G+ + + + + + P + G V R E Sbjct: 92 AVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFL 151 Query: 124 RFRQFIQCDVDNVGSSAETADAEMCMMM 151 R +F+ + ++ E A+ E+ M+ Sbjct: 152 RTSEFLWQEGHTAHATREEAEEEVRRML 179 Score = 38.5 bits (89), Expect = 0.003 Identities = 25/168 (14%), Positives = 44/168 (26%), Gaps = 28/168 (16%) Query: 333 RYDGLVSRFKGQNVPATGFSIGISRLIVALKSLESSTNNIKEMGPVL---------ITTM 383 +D Q S G+S + + + + P L I Sbjct: 239 AFDIKFQDRDLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKD 298 Query: 384 DHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRG 443 + L Q Q L G+R + G + + + P + G + G Sbjct: 299 ESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGG 358 Query: 444 MLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQE 491 + GKE T+P++ L + L Sbjct: 359 QAVLASRLGGKE-------------------TLPLAALPEALPGKLDA 387 >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA, aminoacylation, translational regulation, protein/RNA, ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 Score = 50.0 bits (119), Expect = 1e-06 Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 9/157 (5%) Query: 24 RIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISL 83 I + +R+ + Y + ++ P + L + D +F+ ++ ++ Sbjct: 272 TIFRELEVFVRSKLKEYQYQEVKGPFM-MDRVLWEKTGHWDNYKDAMFTTSSENREYCIK 330 Query: 84 RYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEK----HGPGRFRQFIQCDVDNVGSS 139 + + + P R G RNE HG R R F Q D + Sbjct: 331 PMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTE 390 Query: 140 AETAD--AEMCMMMADTLEAVGIKRNDYHIGINNRKI 174 + D ++ D G + + ++ R Sbjct: 391 EQIRDEVNGCIRLVYDMYSTFGFE--KIVVKLSTRPE 425 Score = 36.2 bits (83), Expect = 0.016 Identities = 14/94 (14%), Positives = 36/94 (38%), Gaps = 19/94 (20%) Query: 398 QMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELS 457 Q L AGIR + L ++ G +++ R P ++ G E G + ++ Sbjct: 560 QKLSNAGIRVKADL-RNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKD--- 615 Query: 458 REIKNNESWREARVAQITIPISELVSTVKKILQE 491 ++ ++E++ +++ ++ Sbjct: 616 ---------------LGSMDVNEVIEKLQQEIRS 634 >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Length = 459 Score = 48.3 bits (114), Expect = 4e-06 Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 16/156 (10%) Query: 11 LPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGV 70 LP GF +IR + IRN+ + G D P+L D L K V Sbjct: 34 LPYGF--------KIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEV 85 Query: 71 FSL----QDDDGQWISLRYDLTAPLARYVAEN-FDTIVFPCRTYRIGPVFRNEKHGPG-- 123 + + + ++LR P+ + P + Y+I FR E Sbjct: 86 YWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPL 145 Query: 124 -RFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAV 158 R R+ + + S + + Sbjct: 146 IRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKF 181 Score = 32.1 bits (72), Expect = 0.29 Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 20/122 (16%) Query: 375 MGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAII 434 + V + + + K + + L+ R + G + + + PL I Sbjct: 285 VVIVPLIFKGKEDIVMEKAKEIYEKLK-GKFRVHIDD-RDIRPGRKFNDWEIKGVPLRIE 342 Query: 435 QGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQENKE 494 G + + + + + + ++L+ V+K L E Sbjct: 343 VGPKDIENKKITLFRRDTME------------------KFQVDETQLMEVVEKTLNNIME 384 Query: 495 EI 496 I Sbjct: 385 NI 386 >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 Score = 47.8 bits (113), Expect = 6e-06 Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 7/165 (4%) Query: 10 ELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKG 69 + G IR I I + + G+D + TP+L D + Sbjct: 258 LVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDM 317 Query: 70 VFSLQDDDGQWISLRYDLTAPLAR-YVAENFDTIVFPCRTYRIGPVFRNEK----HGPGR 124 +Q D+ + + LR Y + P R +G + R E G R Sbjct: 318 FPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQR 377 Query: 125 FRQFIQCDVDNVGSSAETAD--AEMCMMMADTLEAVGIKRNDYHI 167 R D + + + M+ D + G + + + Sbjct: 378 VRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRL 422 Score = 35.4 bits (81), Expect = 0.028 Identities = 23/170 (13%), Positives = 48/170 (28%), Gaps = 39/170 (22%) Query: 334 YDGLVSRFKGQNVPATGFSIGISRLIVALKSLESSTNNIKEMGPVL----------ITTM 383 Y G V G + R + L +E I + Sbjct: 503 YIGQDGEHHRPVVIHRGVVSTMERFVAFL---------TEETKGAFPTWLAPKQVQIIPV 553 Query: 384 DHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGTGERSRG 443 + D Q+ L++ G+R + ++ G +++ A + P I+ G E Sbjct: 554 NVDLHYDYARQLQ-DELKSQGVRVSIDD-RNEKMGYKIREAQMQKIPYQIVVGDKEVENN 611 Query: 444 MLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQENK 493 + ++ Q T+ E + + ++ K Sbjct: 612 QVNVRQYGSQD------------------QETVEKDEFIWNLVDEIRLKK 643 >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 Score = 47.4 bits (112), Expect = 7e-06 Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 21/149 (14%) Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDD-GQWI 81 + R I+ IR + + G +ETP + + L P + F G + Sbjct: 36 LLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHL----VPFETRFVGPGHSQGMNL 91 Query: 82 SLRYDLTAP---LARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGS 138 L T+P + R + +++ FRNE+ G +F + Sbjct: 92 WLM---TSPEYHMKRLLVAGCG------PVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHY 142 Query: 139 SAETADAEMCMMMADTLEAVGIKRNDYHI 167 + + D L+ V + Sbjct: 143 DMY----RLMNEVDDLLQQVLDCPAAESL 167 >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 Length = 294 Score = 47.4 bits (112), Expect = 8e-06 Identities = 19/139 (13%), Positives = 44/139 (31%), Gaps = 12/139 (8%) Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWIS 82 + I+ +IL+ + + + GF + ++ S PD + + G + Sbjct: 15 LDIQTKILEYMTDFFVKEGFKWLLPVII--SPITDPLWPDPAGEGMEPAEV-EIYGVKMR 71 Query: 83 LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFR---QFIQCDVDNVGSS 139 L + + +A + + + P R E R +F Q D + + Sbjct: 72 LTHSMILHKQLAIAMGLK------KIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK 125 Query: 140 AETADAEMCMMMADTLEAV 158 E + ++ Sbjct: 126 MEDIMRLIERLVYGLFRKA 144 >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Length = 458 Score = 47.1 bits (111), Expect = 1e-05 Identities = 70/482 (14%), Positives = 132/482 (27%), Gaps = 94/482 (19%) Query: 11 LPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGV 70 LP G R+ +I +R G + P L+ +D L + D + Sbjct: 63 LPLGH--------RVLKKIEQIVREEQNRAGAIELLMPTLQLAD-LWRESGRYDAYGPEM 113 Query: 71 FSLQDDDGQWISLRYDLTAPLARYVAEN-FDTIVFPCRTYRIGPVFRNEKHGPGRF---R 126 + D + + + P Y I FR+E+ R Sbjct: 114 LRIADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGR 173 Query: 127 QFIQCDVDNVGSSAETADAE---MCMMMADTLEAVGIKRNDYHIGINNRKILDGILEKIG 183 +F+ D + A M + T +G+K + I Sbjct: 174 EFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMGLK--AIPMRAETGPI--------- 222 Query: 184 LHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVSF 243 G D +E +++ + + L + + D GD T Sbjct: 223 --GGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLTPI-------------- 266 Query: 244 LSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLEYYT 303 K +Y A + +E V ++ + R I G +Y Sbjct: 267 -----IKQWTSVY-------AATEDVHEPARYESEVPEANRLNTR-----GIEVGQIFYF 309 Query: 304 GCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIVALK 363 G Y + V G Y VSR G + A GI Sbjct: 310 GTKYSDSMKANVTGPDGTDAPIHG----GSYGVGVSRLLGAIIEACHDDNGIIW------ 359 Query: 364 SLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKY 423 + ++ D+ + + + L G+ + + G + Sbjct: 360 -----PEAVAPFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDD-TDQRAGAKFAT 413 Query: 424 ADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVS 483 AD P I G + G +++K + G + + ++++V+ Sbjct: 414 ADLIGIPWQIHVGPRGLAEGKVELKRRSDGA------------------RENLALADVVA 455 Query: 484 TV 485 + Sbjct: 456 RL 457 >1e1o_A Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 Score = 45.8 bits (108), Expect = 2e-05 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 21/132 (15%) Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWIS 82 +R++IL +IR GF +ETP+++ RP + D D Sbjct: 183 FVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGA-----SARPFITHHNALDLDMY--- 234 Query: 83 LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAET 142 LR L R V F+ + + I FRNE +F ++ Sbjct: 235 LRIAPELYLKRLVVGGFERV------FEINRNFRNEGISVRHNPEFTMMEL-------YM 281 Query: 143 ADAEMCMMMADT 154 A A+ ++ T Sbjct: 282 AYADYHDLIELT 293 >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 Score = 45.2 bits (106), Expect = 4e-05 Identities = 48/237 (20%), Positives = 88/237 (37%), Gaps = 20/237 (8%) Query: 21 KEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQW 80 + ++ R +I +R +++GF IETP+L + G R + G++ Sbjct: 136 QRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEG------ARDYLVPSRV--HKGKF 187 Query: 81 ISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSA 140 +L + FD R Y+I FR+E R +F Q DV+ +A Sbjct: 188 YALPQSPQLFKQLLMMSGFD------RYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTA 241 Query: 141 ETADAEMC-MMMADTLEAVGIKRNDYHIGINNRKILDGILEKIGLHGDDKLNERLIVLRA 199 M ++ LE G+ D+ + +K L +L + +L++ Sbjct: 242 PQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKS 301 Query: 200 IDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIMVSFLSIDLEKSMHELY 256 ++ G + GA+LT +QID +F+ I K + + Sbjct: 302 VEFAVFAG-----PANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIK 353 >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- tRNA synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Length = 572 Score = 43.8 bits (102), Expect = 1e-04 Identities = 36/256 (14%), Positives = 75/256 (29%), Gaps = 26/256 (10%) Query: 11 LPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETP------LLEYSDSLGKFLPDED 64 LP R+ ++ +R +E + P L + S + P+ Sbjct: 43 LPLAN--------RVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPN-- 92 Query: 65 RPNKGVFSLQDDDGQWISLRYDLTAPLARYV-AENFDTIVFPCRTYRIGPVFRNEK---H 120 ++ L+D + + L + E P Y+I +R+EK Sbjct: 93 -----LYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRS 147 Query: 121 GPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILE 180 G R R+FI D + + + D ++ I + + G + Sbjct: 148 GLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLEFRAIIGDGGAMGGK-D 206 Query: 181 KIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIM 240 ++ E I L + + D K A I + Sbjct: 207 SKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQLDLEKIATPEVGTIAEV 266 Query: 241 VSFLSIDLEKSMHELY 256 +F ++ ++ + + Sbjct: 267 ANFFEVEPQRIIKSVL 282 Score = 37.6 bits (86), Expect = 0.007 Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 20/117 (17%) Query: 378 VLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGT 437 ++ D Q M+ AG + ++ G + AD CP+ I G Sbjct: 474 HVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDD-RNERAGVKFADADLIGCPIRITVGK 532 Query: 438 GERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQENKE 494 K + E+ + + E + + EL ST+ ++ E Sbjct: 533 ----------KAVDGVVEV-KIKRTGE--------MLEVRKEELESTLSILMNTTSE 570 >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 Score = 43.5 bits (102), Expect = 1e-04 Identities = 32/135 (23%), Positives = 46/135 (34%), Gaps = 24/135 (17%) Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWIS 82 RI+ + + R F + TP L + S G VF + G+ Sbjct: 178 FRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEG---------GSSVFEVTYFKGKA-Y 227 Query: 83 LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFR-QFIQCDVDNVGSSAE 141 L + + +F+ R Y IGPVFR E R +F D+ E Sbjct: 228 LAQSPQFNKQQLIVADFE------RVYEIGPVFRAENSNTHRHMTEFTGLDM-------E 274 Query: 142 TADAEMCMMMADTLE 156 A E + DTL Sbjct: 275 MAFEEHYHEVLDTLS 289 >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 Score = 42.5 bits (99), Expect = 2e-04 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 20/139 (14%) Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLG---KFLPDEDRPNKGVFSLQDDDGQ 79 +R+R+R++ +I + + GF +ETP L S G +P P G Sbjct: 144 LRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEP-----------GL 192 Query: 80 WISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSS 139 + +L + D R ++I FR+E R F Q D++ Sbjct: 193 FYALPQSPQLFKQMLMVAGLD------RYFQIARCFRDEDLRADRQPDFTQLDLEMSFVE 246 Query: 140 AETADAEMCMMMADTLEAV 158 E +MA Sbjct: 247 VEDVLELNERLMAHVFREA 265 >3e9h_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm; HET: KAA; 2.10A {Bacillus stearothermophilus} PDB: 3e9i_A* Length = 493 Score = 41.3 bits (96), Expect = 6e-04 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 20/139 (14%) Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYS---DSLGKFLPDEDRPNKGVFSLQDDDGQ 79 R+ I+ S+R +++G+ +ETP++ + F+ + + ++ + Sbjct: 174 FITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELH 233 Query: 80 WISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSS 139 L R + + + Y IG VFRNE +F ++ + Sbjct: 234 -----------LKRLIVGGLE------KVYEIGRVFRNEGISTRHNPEFTMLELYEAYAD 276 Query: 140 AETADAEMCMMMADTLEAV 158 ++A V Sbjct: 277 FRDIMKLTENLIAHIATEV 295 >1nj1_A Proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase; HET: 5CA; 2.55A {Methanothermobacterthermautotrophicus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Length = 501 Score = 40.8 bits (95), Expect = 6e-04 Identities = 24/153 (15%), Positives = 47/153 (30%), Gaps = 24/153 (15%) Query: 11 LPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLL-------EYSDSLGKFLPDE 63 +P GF IR L +R I + + + PLL + + + F + Sbjct: 67 MPHGF--------MIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEV 117 Query: 64 DRPNKGVFSLQDDDGQWISLRYDLTAPLARYVA-ENFDTIVFPCRTYRIGPVFRNEKHGP 122 G + ++LR + A P R Y++ FR E Sbjct: 118 YWVTHGG---LSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHT 174 Query: 123 G----RFRQFIQCDVDNVGSSAETADAEMCMMM 151 + + ++A A+ ++ + Sbjct: 175 RPLIRVREITTFKEAHTIHATASEAEEQVERAV 207 >3g1z_A Putative lysyl-tRNA synthetase; drug target, nucleotide, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: AMP; 1.95A {Salmonella typhimurium} Length = 326 Score = 39.8 bits (92), Expect = 0.001 Identities = 22/154 (14%), Positives = 44/154 (28%), Gaps = 9/154 (5%) Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWIS 82 + R I+ IR + + G +ETP + + G + Sbjct: 17 LLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTD---IHLFPFETRFVGPGHSQGINLY 73 Query: 83 LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAET 142 L + R +A +++ FRNE+ G +F + Sbjct: 74 LMTSPEYHMKRLLAAGCG------PVFQLCRSFRNEEMGRHHNPEFTMLEWYRPHYDMYR 127 Query: 143 ADAEMCMMMADTLEAVGIKRNDYHIGINNRKILD 176 E+ ++ L+ + Y +D Sbjct: 128 LMNEVDDLLQQVLDCQPAESLSYQQAFQRHLEID 161 >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Length = 471 Score = 38.7 bits (89), Expect = 0.003 Identities = 33/218 (15%), Positives = 71/218 (32%), Gaps = 35/218 (16%) Query: 11 LPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETP------LLEYSDSLGKFLPDED 64 G IR + + + + G+ +ETP L + S + + + Sbjct: 45 SLGGG--------PIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNN-- 94 Query: 65 RPNKGVFSLQDDDGQWISLRYDLTAP----LARYVAENFDTIVFPCRTYRIGPVFRNEKH 120 ++ D +G +++ VA++ + P + + G V R E Sbjct: 95 -----MYLF-DIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPS 148 Query: 121 GPGRF----RQFIQCDVDNVGSSAETADA-----EMCMMMADTLEAVGIKRNDYHIGINN 171 G R F Q D + D E ++ + L +G+ + + ++ Sbjct: 149 GSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSM 208 Query: 172 RKILDGILEKIGLHGDDKLNERLIVLRAIDKLDKFGLQ 209 E +G + + E + A +K+G+ Sbjct: 209 SDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGID 246 Score = 31.0 bits (69), Expect = 0.58 Identities = 15/119 (12%), Positives = 39/119 (32%), Gaps = 13/119 (10%) Query: 380 ITTMDHDSDSLSKY-QMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCP-LAIIQGT 437 + T + + L G R + S + +++ + P + + G Sbjct: 346 VKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHIESTAKPAVNVFIGA 405 Query: 438 GERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQENKEEI 496 E +L ++ + ES + R+A ++ V + + +E + + Sbjct: 406 KEVREKVLDVRVF-----------DLESMKRRRLAIAYGDAADAVENLAAVAEELESPV 453 >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* Length = 346 Score = 38.4 bits (89), Expect = 0.003 Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 3/60 (5%) Query: 105 PCRTYRIGPVFRNEK-HGPGRFRQFIQCDVDNVGSSAETADA--EMCMMMADTLEAVGIK 161 R FR E R + F + +G+ + +D + +G+ Sbjct: 168 GLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLT 227 >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 Score = 37.7 bits (87), Expect = 0.006 Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 18/138 (13%) Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYS--DSLGKFLPDEDRPNKGVFSLQDDDGQW 80 R+ I+ S+R +++G+ +ETP++ + + ++ Sbjct: 174 FITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELH 233 Query: 81 ISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSA 140 L R + + + Y IG VFRNE +F ++ + Sbjct: 234 ----------LKRLIVGGLE------KVYEIGRVFRNEGISTRHNPEFTMLELYEAYADF 277 Query: 141 ETADAEMCMMMADTLEAV 158 ++A V Sbjct: 278 RDIMKLTENLIAHIATEV 295 >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 Score = 37.5 bits (86), Expect = 0.007 Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 24/186 (12%) Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWIS 82 RI++ R + F I TP L S G E + L + Sbjct: 244 FRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLY-- 301 Query: 83 LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEK-HGPGRFRQFIQCDVDNVGSSAE 141 + +F + + +GPVFR E + +F D++ Sbjct: 302 --------KQMAIMGDFR------KVFEVGPVFRAENSNTRRHLTEFEGLDIEM------ 341 Query: 142 TADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILEKIGLHGDDKLNERLIVLRAID 201 E D +E + D ++ + + RL AI+ Sbjct: 342 -EIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYRPFLRLTYKEAIE 400 Query: 202 KLDKFG 207 L G Sbjct: 401 MLRASG 406 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 35.0 bits (79), Expect = 0.035 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 9/30 (30%) Query: 361 ALKSLESSTNNIK----EMGPVL-I-TTMD 384 ALK L++S +K + P L I TM+ Sbjct: 21 ALKKLQAS---LKLYADDSAPALAIKATME 47 >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 701 Score = 33.8 bits (77), Expect = 0.088 Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 13/133 (9%) Query: 7 LRAELPR--GFADCPTKEIRIRNRILDSIRNIYENY--GFDPIETPLLE---YSDSLGKF 59 R ++ K + +S++ I Y G + +LE + + Sbjct: 119 PRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEM 178 Query: 60 LPDEDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNE- 118 F ++LR +T+ V++ + P + + I FR E Sbjct: 179 GLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQ 238 Query: 119 ----KHGPGRFRQ 127 H + Sbjct: 239 KEDKSHLMT-YHS 250 Score = 31.1 bits (70), Expect = 0.51 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 7/71 (9%) Query: 27 NRILDSIRNIYENYGFDPIETPLLEYS---DSLGKFLPDEDRPNK-GVFSLQDDDGQWIS 82 N ++++R Y GF+ P++ F P E F L + Sbjct: 68 NDTIENLRQAYLRMGFEEYINPVIVDERDIYKQ--FGP-EAMAVLDRCFYLAGLPRPDVG 124 Query: 83 LRYDLTAPLAR 93 L + + + + Sbjct: 125 LSDEKISQIEK 135 >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 Score = 32.3 bits (73), Expect = 0.28 Identities = 28/135 (20%), Positives = 43/135 (31%), Gaps = 24/135 (17%) Query: 23 IRIRNRILDSIRNIYENYGFDPIETPLLEYSDS-LGKFLPDEDRPNKGVFSLQDDDGQWI 81 +IR+ + ++R+ + GF I TP + + + G L + F Q Sbjct: 137 FKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQSP----- 191 Query: 82 SLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAE 141 +A D R Y I P+FR E+H R E Sbjct: 192 ------QLYKQIMMASGLD------RVYEIAPIFRAEEHNTTRHLNEAWSIDS------E 233 Query: 142 TADAEMCMMMADTLE 156 A E + LE Sbjct: 234 MAFIEDEEEVMSFLE 248 >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} Length = 307 Score = 31.9 bits (71), Expect = 0.38 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 427 RNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVK 486 A+ T E ML D+ G++ + +EA + + E + Sbjct: 232 WERVQAVCGQTKENRSSMLV--DVIGGRQTEADAIIGYLLKEASLQGLDAVHLEFLYGSI 289 Query: 487 KILQENKEEI 496 K L+ N ++ Sbjct: 290 KALERNTNKV 299 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 31.4 bits (70), Expect = 0.42 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Query: 450 LAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQENKEE 495 +A+ L++E ++ WRE + + + EL + K + QE +E+ Sbjct: 74 IAQADRLTQEPESIRKWREEQRKR----LQELDAASKVMEQEWREK 115 >3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} Length = 465 Score = 30.9 bits (69), Expect = 0.65 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 135 NVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGIN--NRKILDGILEKIGLHGDDKLNE 192 +S + A++ + D L + K D+ ++ IL G +GL + Sbjct: 290 LAKASLQPTYADLLSSLQDQLPSSYQKPADFDWAMHPGGATILSGAESAMGLTPEH---- 345 Query: 193 RLIVLRAIDKLDKFG 207 + + D+ G Sbjct: 346 ---MRASYDRYINHG 357 >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 685 Score = 30.3 bits (68), Expect = 0.95 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 10/95 (10%) Query: 27 NRILDSIRNIYENYGFDPIETPLLEYS---DSLGKFLPDEDRPNK-GVFSLQD---DDGQ 79 N ++++R Y GF+ P++ F P E F L D Sbjct: 68 NDTIENLRQAYLRMGFEEYINPVIVDERDIYKQ--FGP-EAMAVLDRCFYLAGLPRPDVG 124 Query: 80 WISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPV 114 + L V+E+ +++ Y+ G + Sbjct: 125 LSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTL 159 >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A Length = 167 Score = 29.5 bits (65), Expect = 1.8 Identities = 17/144 (11%), Positives = 34/144 (23%), Gaps = 12/144 (8%) Query: 71 FSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQ 130 F++ + + SL ++ C K G Sbjct: 27 FTVLTNSLEEKSLADMKGKVT--IISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISA 84 Query: 131 CDVDNVGSSAETADAEMCMMMAD-----TLEAVGIKRNDYHIGINNRKILD--GILEKIG 183 + ++D EA G+ + + + +LD G + Sbjct: 85 DLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAE 144 Query: 184 LHGDDKLNERLI--VLRAIDKLDK 205 + N + A L K Sbjct: 145 Y-VSEATNHPNYEKPIEAAKALVK 167 >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Length = 294 Score = 29.6 bits (66), Expect = 1.8 Identities = 17/129 (13%), Positives = 45/129 (34%), Gaps = 10/129 (7%) Query: 27 NRILDSIRNIYENYGFDPIETPLLE----YSDSLGKFLPDEDRPNKGVFSLQDDDGQWIS 82 R ++ I +++ G++ ++ +E ++L R + F + D+ Sbjct: 56 TRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTH 115 Query: 83 LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCDVDNVGSSAET 142 + + + P + G V+R + QF Q + V + + Sbjct: 116 TSPVQARTMEKRNGQG------PVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKM 169 Query: 143 ADAEMCMMM 151 +D + + + Sbjct: 170 SDLKGTLEL 178 >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 665 Score = 29.5 bits (66), Expect = 1.9 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 10/95 (10%) Query: 27 NRILDSIRNIYENYGFDPIETPLLEYS---DSLGKFLPDEDRPNK-GVFSLQDDDGQWIS 82 N ++++R Y GF+ P++ F P E F L + Sbjct: 68 NDTIENLRQAYLRMGFEEYINPVIVDERDIYKQ--FGP-EAMAVLDRCFYLAGLPRPDVG 124 Query: 83 L---RYDLTAPLARYVAENFDTIVFPCRTYRIGPV 114 L + L V+E+ +++ Y+ G + Sbjct: 125 LSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTL 159 >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 2aly_A* 2akw_A* 2amc_A* Length = 350 Score = 29.3 bits (65), Expect = 2.2 Identities = 25/140 (17%), Positives = 42/140 (30%), Gaps = 19/140 (13%) Query: 27 NRILDSIRNIYENYGFDPIETPLLEY-SDSLGKFLPDEDRP---NKGVFSLQDDDGQW-- 80 + + I+ G+ +E P +E + E P F L + + Sbjct: 104 TLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEG 163 Query: 81 ---------ISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQC 131 + LR + RY+ + P R G VFR E+ F Q Sbjct: 164 PLGEEVEGRLLLRTHTSPMQVRYMVAHTP----PFRIVVPGRVFRFEQTDATHEAVFHQL 219 Query: 132 DVDNVGSSAETADAEMCMMM 151 + VG A + + Sbjct: 220 EGLVVGEGIAMAHLKGAIYE 239 >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA synthetase; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Length = 505 Score = 29.2 bits (64), Expect = 2.2 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 10/113 (8%) Query: 378 VLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQLKYADRRNCPLAIIQGT 437 +I + + + + L G+ ++ + N G + D P A+ Sbjct: 402 AVIPLVKNRPEITEYAKRLKARLLALGLGRVLYE-DTGNIGKAYRRHDEVGTPFAVTVD- 459 Query: 438 GERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQ 490 + Q KD + + +++ ++ QI + + EL +++ L+ Sbjct: 460 ---YDTIGQSKDGTTRLKDTVTVRDRDTME-----QIRLHVDELEGFLRERLR 504 >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha JMP134} Length = 318 Score = 29.1 bits (64), Expect = 2.3 Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 431 LAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQ 490 I + +S Q DLA+GK + N R I +P + ++ + ++++ Sbjct: 255 RRIAETMPRQSSSTAQ--DLARGKRSEIDHLNGLIVRRGDALGIPVPANRVLHALVRLIE 312 Query: 491 ENKE 494 + ++ Sbjct: 313 DKQQ 316 >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, PSI-2; 2.30A {Staphylococcus aureus subsp} Length = 294 Score = 29.2 bits (64), Expect = 2.4 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 2/50 (4%) Query: 444 MLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQENK 493 M D+ + L E +R AR + P + + + + Q+N+ Sbjct: 240 MYY--DIVHQQPLEVEAIQGFIYRRAREHNLDTPYLDTIYSFLRAYQQNE 287 >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 648 Score = 28.8 bits (64), Expect = 2.6 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 6/44 (13%) Query: 27 NRILDSIRNIYENYGFDPIETPLLEYS---DSLGKFLPDEDRPN 67 N ++++R Y GF+ P++ F P E Sbjct: 68 NDTIENLRQAYLRMGFEEYINPVIVDERDIYKQ--FGP-EAMAV 108 >2c46_A MRNA capping enzyme; guanylyltransferase, phosphatase, transferase, alternative splicing, hydrolase, mRNA processing, multifunctional enzyme; 1.6A {Homo sapiens} PDB: 1i9s_A 1i9t_A Length = 241 Score = 28.7 bits (64), Expect = 2.6 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 22/104 (21%) Query: 10 ELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPN-K 68 ++P + +CP + + R L P++T L + +E+R + Sbjct: 27 KIPPRWLNCPRRGQPVAGRFL-------------PLKTML---GPRYDSQVAEENRFHPS 70 Query: 69 GVFSLQDDDGQWISLRYDLTAPLARYVAENF-----DTIVFPCR 107 + + + L DLT Y + I C+ Sbjct: 71 MLSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCK 114 >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Length = 459 Score = 28.9 bits (64), Expect = 3.0 Identities = 5/72 (6%), Positives = 16/72 (22%), Gaps = 8/72 (11%) Query: 104 FPCRTYRIGPVFRNE------KHGPGRFRQFIQCD--VDNVGSSAETADAEMCMMMADTL 155 P +IG F ++G + + ++ Sbjct: 172 LPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWW 231 Query: 156 EAVGIKRNDYHI 167 + +++ Sbjct: 232 RKFAMSPSNFSS 243 Score = 27.4 bits (60), Expect = 8.5 Identities = 5/21 (23%), Positives = 10/21 (47%) Query: 473 QITIPISELVSTVKKILQENK 493 + + IS+L + K + K Sbjct: 431 KEMMHISKLKDFLIKYISSAK 451 >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* Length = 415 Score = 28.5 bits (63), Expect = 3.3 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 17/116 (14%) Query: 27 NRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDD------DGQW 80 I + ++ + TPL D+L + + + D D + Sbjct: 51 WLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDS-LLIPADHPSRKKGDNYY 109 Query: 81 IS----LRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGRFRQFIQCD 132 ++ LR +A + D +G V+R ++ + F Q + Sbjct: 110 LNRTHMLRAHTSAHQWDLLHAGLD------AFLVVGDVYRRDQIDSQHYPIFHQLE 159 >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Length = 454 Score = 28.5 bits (63), Expect = 3.8 Identities = 14/119 (11%), Positives = 30/119 (25%), Gaps = 21/119 (17%) Query: 378 VLITTMDHDSDSLSKY-QMYTQMLRTAGIRAEMFLG--SSKNFGNQLKYADRRNCPLAII 434 V + + L + Q L GI + D + +++ Sbjct: 341 VALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVL 400 Query: 435 QGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQENK 493 G++Q++ + + IS+L + K L Sbjct: 401 VTETTLENGLIQLRSRDTTM------------------KEMMHISKLRDFLVKYLASAS 441 >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.50A {Geobacter metallireducens gs-15} Length = 312 Score = 28.4 bits (62), Expect = 4.3 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 2/60 (3%) Query: 431 LAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQ 490 L GE M D +G+ L I +P E+++T+ + Sbjct: 246 LEFTDAMGEYKPSMEI--DREEGRPLEIAAIFRTPLAYGAREGIAMPRVEMLATLLEQAT 303 >1d8w_A L-rhamnose isomerase; beta-alpha-8-barrels, aldose-ketose isomerization, hydride shift; 1.60A {Escherichia coli} SCOP: c.1.15.2 PDB: 1de5_A* 1de6_A* Length = 426 Score = 28.2 bits (63), Expect = 4.8 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 9/60 (15%) Query: 1 MGKKTKLRAEL----PRGFADCPTKEIRIRNRILDSIRNIY-----ENYGFDPIETPLLE 51 G++ + + P G D + R R+L ++ + + D +E+ L Sbjct: 179 FGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFG 238 >3drn_A Peroxiredoxin, bacterioferritin comigratory protein homolog; oxidoreductase; HET: CIT; 2.15A {Sulfolobus solfataricus} Length = 161 Score = 28.1 bits (61), Expect = 5.0 Identities = 22/166 (13%), Positives = 44/166 (26%), Gaps = 26/166 (15%) Query: 56 LGKFLPDEDRPNKGVFSLQDDDGQWISLR-YDLTAPLARYVAENFDTIVFPCRTYRIGPV 114 +G P F D+G+ ISL Y + Y DT Sbjct: 4 VGDKAPL--------FEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDN 55 Query: 115 FRNEKHGPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKI 174 + K D+++ E ++ + + I Sbjct: 56 WDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFILPARITF 115 Query: 175 L---DGILEKI-------GLHGDDKLNERLIVLRAIDKLDKFGLQG 210 + GI+ I H ++ L+A+ ++ + + Sbjct: 116 VIDKKGIIRHIYNSQMNPANHVNE-------ALKALKQIKEEEISL 154 >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 Score = 27.8 bits (61), Expect = 5.3 Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 1/65 (1%) Query: 432 AIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISELVSTVKKILQE 491 I G+ R + E S N+ E + I LV + + Sbjct: 185 TIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDK-DEKALPNGEAWIPNLVKAITDVATN 243 Query: 492 NKEEI 496 ++ I Sbjct: 244 QRKAI 248 >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, beta subunit, structural genomics, PSI-2, protein structure initiative; HET: TAM; 2.44A {Porphyromonas gingivalis} Length = 213 Score = 27.8 bits (61), Expect = 5.3 Identities = 10/99 (10%), Positives = 21/99 (21%), Gaps = 2/99 (2%) Query: 26 RNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPNKGVFSLQDDDGQWISLRY 85 R + + GF+ I L + + + +R Sbjct: 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNC--MRQ 63 Query: 86 DLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKHGPGR 124 L ++ N + G +R Sbjct: 64 TLLFGGLETLSHNLRRKHLSLYLFEWGKCYRFHAAKRTD 102 >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Length = 549 Score = 28.0 bits (62), Expect = 5.3 Identities = 7/41 (17%), Positives = 15/41 (36%) Query: 27 NRILDSIRNIYENYGFDPIETPLLEYSDSLGKFLPDEDRPN 67 ++ +R Y GF+ + P++ + K E Sbjct: 60 METIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAV 100 >1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2zxw_D* Length = 147 Score = 27.8 bits (62), Expect = 5.4 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%) Query: 423 YADRRNCPLAIIQGTGERSRGMLQIKDLAKG--KELSREIK 461 Y DRR+ PL + S +K+ K LS + K Sbjct: 16 YVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEK 56 >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 Length = 159 Score = 27.6 bits (60), Expect = 7.4 Identities = 25/158 (15%), Positives = 48/158 (30%), Gaps = 18/158 (11%) Query: 57 GKFLPDEDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFR 116 G +PD SL ++D ISL+ +T V + P T + Sbjct: 10 GDPIPD--------LSLLNEDNDSISLK-KITENNRVVVFFVYPRASTPGSTRQASGFRD 60 Query: 117 NEKHGPGRFRQFIQCDVDNVGSSAETADAEMCMMMA-----DTLEAVGIKRNDYHIGINN 171 N + F + + + + + +G K+ I + Sbjct: 61 NYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRS 120 Query: 172 RKIL-DGILEKIGLHGDDKLN-ERLI--VLRAIDKLDK 205 I DG L+ + +++ VL +K + Sbjct: 121 HFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFKE 158 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.138 0.393 Gapped Lambda K H 0.267 0.0499 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,249,832 Number of extensions: 203869 Number of successful extensions: 850 Number of sequences better than 10.0: 1 Number of HSP's gapped: 787 Number of HSP's successfully gapped: 83 Length of query: 496 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 400 Effective length of database: 3,365,806 Effective search space: 1346322400 Effective search space used: 1346322400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.1 bits)