BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780928|ref|YP_003065341.1| histidyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (496 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780928|ref|YP_003065341.1| histidyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 496 Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/496 (100%), Positives = 496/496 (100%) Query: 1 MGKKTKLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFL 60 MGKKTKLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFL Sbjct: 1 MGKKTKLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFL 60 Query: 61 PDEDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKH 120 PDEDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKH Sbjct: 61 PDEDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKH 120 Query: 121 GPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILE 180 GPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILE Sbjct: 121 GPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILE 180 Query: 181 KIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIM 240 KIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIM Sbjct: 181 KIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIM 240 Query: 241 VSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLE 300 VSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLE Sbjct: 241 VSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLE 300 Query: 301 YYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIV 360 YYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIV Sbjct: 301 YYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIV 360 Query: 361 ALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQ 420 ALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQ Sbjct: 361 ALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQ 420 Query: 421 LKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISE 480 LKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISE Sbjct: 421 LKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISE 480 Query: 481 LVSTVKKILQENKEEI 496 LVSTVKKILQENKEEI Sbjct: 481 LVSTVKKILQENKEEI 496 >gi|254781056|ref|YP_003065469.1| phage-related lysozyme [Candidatus Liberibacter asiaticus str. psy62] Length = 171 Score = 27.7 bits (60), Expect = 0.41, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 19/130 (14%) Query: 173 KILDGILEKIGLHGDDKLNERLIVLRAIDKLDKF-GLQ--------GVKLLLGEGRTDNS 223 +I+ + IG++GDDK N+ + I L +F GL+ G +G G T Sbjct: 6 RIISFVKRMIGMNGDDKHNKIPVPNALIKMLKEFEGLRLTAYRDIGGGAWTIGYGHT--G 63 Query: 224 GDFTKGANLTSEQIDIMVSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSG 283 D T+G +T ++ + FL D KS++ L E + + N LV +++ V G Sbjct: 64 SDVTEGMTITEKEAE---DFLLKDASKSLNLLLESSPALKSTSE--NRLVAVADFVFNLG 118 Query: 284 ---YNSNRIK 290 YN + K Sbjct: 119 IGNYNKSTFK 128 >gi|254781118|ref|YP_003065531.1| lysyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 502 Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust. Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%) Query: 22 EIRIRNR--ILDSIRNIYENYGFDPIETPLLE 51 +IR + R ++ IR+ E GF +ETP+L+ Sbjct: 173 KIRFQQRSLLISQIRHFMEKKGFMEVETPILQ 204 Score = 23.9 bits (50), Expect = 6.0, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 347 PATGFSIGISRLIVALKSLES 367 PA+G +GI RLI+ L + S Sbjct: 462 PASGLGLGIDRLIMLLTNAPS 482 >gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62] Length = 789 Score = 25.4 bits (54), Expect = 2.3, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Query: 299 LEYYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGR 333 ++Y+T CV A+LG N+ Q+ + VGG G+ Sbjct: 483 MDYFTRCVGMALLG---GNKAQRFIHIRGVGGSGK 514 >gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 520 Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Query: 156 EAVGIKRNDYHIGINNRKILDGI-----LEKIGLHGDDKLNERLIVLRAIDKLD 204 E+ I R + H RKI ++ +G+ GD++ E + LRA+ +D Sbjct: 421 ESDAIYREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSID 474 >gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus str. psy62] Length = 523 Score = 24.3 bits (51), Expect = 5.5, Method: Compositional matrix adjust. Identities = 9/24 (37%), Positives = 17/24 (70%) Query: 269 FNELVVISELVRKSGYNSNRIKIS 292 F E+ + E++R G+N +R+K+S Sbjct: 493 FTEMNLKFEIIRLEGHNIDRVKVS 516 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.138 0.393 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 319,483 Number of Sequences: 1233 Number of extensions: 13907 Number of successful extensions: 32 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 11 length of query: 496 length of database: 328,796 effective HSP length: 78 effective length of query: 418 effective length of database: 232,622 effective search space: 97235996 effective search space used: 97235996 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)