BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780928|ref|YP_003065341.1| histidyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(496 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780928|ref|YP_003065341.1| histidyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 496
Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/496 (100%), Positives = 496/496 (100%)
Query: 1 MGKKTKLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFL 60
MGKKTKLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFL
Sbjct: 1 MGKKTKLRAELPRGFADCPTKEIRIRNRILDSIRNIYENYGFDPIETPLLEYSDSLGKFL 60
Query: 61 PDEDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKH 120
PDEDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKH
Sbjct: 61 PDEDRPNKGVFSLQDDDGQWISLRYDLTAPLARYVAENFDTIVFPCRTYRIGPVFRNEKH 120
Query: 121 GPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILE 180
GPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILE
Sbjct: 121 GPGRFRQFIQCDVDNVGSSAETADAEMCMMMADTLEAVGIKRNDYHIGINNRKILDGILE 180
Query: 181 KIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIM 240
KIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIM
Sbjct: 181 KIGLHGDDKLNERLIVLRAIDKLDKFGLQGVKLLLGEGRTDNSGDFTKGANLTSEQIDIM 240
Query: 241 VSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLE 300
VSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLE
Sbjct: 241 VSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSGYNSNRIKISSTIVRGLE 300
Query: 301 YYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIV 360
YYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIV
Sbjct: 301 YYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGRYDGLVSRFKGQNVPATGFSIGISRLIV 360
Query: 361 ALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQ 420
ALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQ
Sbjct: 361 ALKSLESSTNNIKEMGPVLITTMDHDSDSLSKYQMYTQMLRTAGIRAEMFLGSSKNFGNQ 420
Query: 421 LKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISE 480
LKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISE
Sbjct: 421 LKYADRRNCPLAIIQGTGERSRGMLQIKDLAKGKELSREIKNNESWREARVAQITIPISE 480
Query: 481 LVSTVKKILQENKEEI 496
LVSTVKKILQENKEEI
Sbjct: 481 LVSTVKKILQENKEEI 496
>gi|254781056|ref|YP_003065469.1| phage-related lysozyme [Candidatus Liberibacter asiaticus str.
psy62]
Length = 171
Score = 27.7 bits (60), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 173 KILDGILEKIGLHGDDKLNERLIVLRAIDKLDKF-GLQ--------GVKLLLGEGRTDNS 223
+I+ + IG++GDDK N+ + I L +F GL+ G +G G T
Sbjct: 6 RIISFVKRMIGMNGDDKHNKIPVPNALIKMLKEFEGLRLTAYRDIGGGAWTIGYGHT--G 63
Query: 224 GDFTKGANLTSEQIDIMVSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSG 283
D T+G +T ++ + FL D KS++ L E + + N LV +++ V G
Sbjct: 64 SDVTEGMTITEKEAE---DFLLKDASKSLNLLLESSPALKSTSE--NRLVAVADFVFNLG 118
Query: 284 ---YNSNRIK 290
YN + K
Sbjct: 119 IGNYNKSTFK 128
>gi|254781118|ref|YP_003065531.1| lysyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 502
Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 22 EIRIRNR--ILDSIRNIYENYGFDPIETPLLE 51
+IR + R ++ IR+ E GF +ETP+L+
Sbjct: 173 KIRFQQRSLLISQIRHFMEKKGFMEVETPILQ 204
Score = 23.9 bits (50), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 347 PATGFSIGISRLIVALKSLES 367
PA+G +GI RLI+ L + S
Sbjct: 462 PASGLGLGIDRLIMLLTNAPS 482
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 25.4 bits (54), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 299 LEYYTGCVYEAILGFPVMNEKQKPVVFGSVGGGGR 333
++Y+T CV A+LG N+ Q+ + VGG G+
Sbjct: 483 MDYFTRCVGMALLG---GNKAQRFIHIRGVGGSGK 514
>gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
Length = 520
Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 156 EAVGIKRNDYHIGINNRKILDGI-----LEKIGLHGDDKLNERLIVLRAIDKLD 204
E+ I R + H RKI ++ +G+ GD++ E + LRA+ +D
Sbjct: 421 ESDAIYREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSID 474
>gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus
str. psy62]
Length = 523
Score = 24.3 bits (51), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 269 FNELVVISELVRKSGYNSNRIKIS 292
F E+ + E++R G+N +R+K+S
Sbjct: 493 FTEMNLKFEIIRLEGHNIDRVKVS 516
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.138 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 319,483
Number of Sequences: 1233
Number of extensions: 13907
Number of successful extensions: 32
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 11
length of query: 496
length of database: 328,796
effective HSP length: 78
effective length of query: 418
effective length of database: 232,622
effective search space: 97235996
effective search space used: 97235996
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)