Query         gi|254780929|ref|YP_003065342.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 408
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 10:48:39 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780929.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1pt6a_ c.62.1.1 (A:) Integrin  49.6     6.8 0.00049   16.3   7.4   86  294-393    91-190 (192)
  2 d1mf7a_ c.62.1.1 (A:) Integrin  46.9     7.4 0.00054   16.0   5.1   50  344-393   135-189 (194)
  3 d1n3ya_ c.62.1.1 (A:) Integrin  36.6      11 0.00077   15.0   4.9   78  303-393   104-186 (189)
  4 d1shux_ c.62.1.1 (X:) Capillar  34.3      11 0.00083   14.7   7.8   45  345-391   133-178 (181)
  5 d1ozja_ d.164.1.1 (A:) SMAD MH  30.1     5.8 0.00043   16.8   0.3   14  221-234   111-124 (126)
  6 d1q0pa_ c.62.1.1 (A:) Compleme  25.2      16  0.0012   13.7   6.1   43  343-386   153-198 (209)
  7 d1ijba_ c.62.1.1 (A:) von Will  22.1      18  0.0013   13.2   8.3   78  301-391   114-193 (202)
  8 d1rq2a1 c.32.1.1 (A:8-205) Cel  21.6      18  0.0013   13.4   1.5   24  153-176   107-130 (198)
  9 d1v9va1 a.29.10.1 (A:8-108) Mi  18.9      21  0.0015   12.8   2.1   39   49-88      3-42  (101)
 10 d1v7pc_ c.62.1.1 (C:) Integrin  18.4      22  0.0016   12.7   4.2   50  344-393   131-190 (193)

No 1  
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.55  E-value=6.8  Score=16.32  Aligned_cols=86  Identities=23%  Similarity=0.554  Sum_probs=51.1

Q ss_pred             CCCC--CCCCCC--CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHH--------H
Q ss_conf             4344--676677--079999734510033302899999999859988751147641689974048874202--------6
Q gi|254780929|r  294 HCFP--HGASQN--KYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR--------Y  361 (408)
Q Consensus       294 hcfp--hgasqn--kymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdtr--------y  361 (408)
                      ++|.  .|+.+|  |.++++.=|..  ..   ...++.+.+...         ...|++|.+|..+.-+..        -
T Consensus        91 ~~~~~~~g~R~~~~kviillTDG~~--~d---~~~~~~~a~~lk---------~~gi~v~~igvg~~~~~~~~~~~~~~~  156 (192)
T d1pt6a_          91 EAFTEARGARRGVKKVMVIVTDGES--HD---NHRLKKVIQDCE---------DENIQRFSIAILGSYNRGNLSTEKFVE  156 (192)
T ss_dssp             TTTSGGGTCCTTCEEEEEEEESSCC--SC---SHHHHHHHHHHH---------HTTEEEEEEEECHHHHHTTCCCHHHHH
T ss_pred             HHHCCCCCCCCCCCEEEEEEECCCC--CC---CHHHHHHHHHHH---------HCCCEEEEEEEECCCCCCCCCCCCCHH
T ss_conf             6301235898886158999966887--76---302699999999---------779969999970555545434313699


Q ss_pred             HHHHHCCCCHH--EEEECCCCCHHHHHHHHHHHH
Q ss_conf             78763059032--044258765344789877777
Q gi|254780929|r  362 TLRQCASDPSK--YYEINSDENVMPIAKSLARNV  393 (408)
Q Consensus       362 tlrqcasdpsk--yyeinsdenvmpiakslarnv  393 (408)
                      .|+..||+|+.  .|.+.+-+..-.+.+.+.+.+
T Consensus       157 ~L~~IAs~p~~~~~f~v~d~~~L~~i~~~i~~~I  190 (192)
T d1pt6a_         157 EIKSIASEPTEKHFFNVSDELALVTIVKTLGERI  190 (192)
T ss_dssp             HHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHH
T ss_pred             HHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHH
T ss_conf             9999866998550898389999999999998885


No 2  
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.89  E-value=7.4  Score=16.04  Aligned_cols=50  Identities=20%  Similarity=0.422  Sum_probs=33.5

Q ss_pred             CEEEEEEEECCCCC---CHHHHHHHHCCCCHH--EEEECCCCCHHHHHHHHHHHH
Q ss_conf             41689974048874---202678763059032--044258765344789877777
Q gi|254780929|r  344 DAITIFSVGFSPDQ---DTRYTLRQCASDPSK--YYEINSDENVMPIAKSLARNV  393 (408)
Q Consensus       344 daitifsvgfspdq---dtrytlrqcasdpsk--yyeinsdenvmpiakslarnv  393 (408)
                      ..|+||.||+...-   -....|+..||+|..  +|.+++-+..-.++..|...+
T Consensus       135 ~gv~i~~VGi~~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~~~~~l~~~i  189 (194)
T d1mf7a_         135 EGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKI  189 (194)
T ss_dssp             TTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf             5990599805776665256999999965998771999599999999999998876


No 3  
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.58  E-value=11  Score=14.96  Aligned_cols=78  Identities=18%  Similarity=0.357  Sum_probs=44.2

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHH---HHHHHCCCCHH--EEEEC
Q ss_conf             70799997345100333028999999998599887511476416899740488742026---78763059032--04425
Q gi|254780929|r  303 NKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTRY---TLRQCASDPSK--YYEIN  377 (408)
Q Consensus       303 nkymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdtry---tlrqcasdpsk--yyein  377 (408)
                      .|.++++.-|..-. +..+-+.   +.+.+         ....+++|.||+.++-+...   .|+..|+.|+.  .|..+
T Consensus       104 ~kvivllTDG~~~~-~~~~~~~---~~~~~---------~~~gv~i~~Vgig~~~~~~~~~~~L~~ias~~~~~~~~~~~  170 (189)
T d1n3ya_         104 AKILIVITDGKKEG-DSLDYKD---VIPMA---------DAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVE  170 (189)
T ss_dssp             EEEEEEEESSCCBS-CSSCHHH---HHHHH---------HHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEES
T ss_pred             CEEEEEEECCCCCC-CCCCHHH---HHHHH---------HHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEEC
T ss_conf             32799995689888-8323999---99999---------98799438983365556633399999996699866089828


Q ss_pred             CCCCHHHHHHHHHHHH
Q ss_conf             8765344789877777
Q gi|254780929|r  378 SDENVMPIAKSLARNV  393 (408)
Q Consensus       378 sdenvmpiakslarnv  393 (408)
                      +-+..-.+...+...+
T Consensus       171 ~~~~l~~i~~~i~~~i  186 (189)
T d1n3ya_         171 DFDALKDIQNQLKEKI  186 (189)
T ss_dssp             SGGGGGGGHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHC
T ss_conf             9999999999999751


No 4  
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.34  E-value=11  Score=14.71  Aligned_cols=45  Identities=13%  Similarity=0.235  Sum_probs=31.2

Q ss_pred             EEEEEEEECCCCCCHHHHHHHHCCCCHHEEEECCCCC-HHHHHHHHHH
Q ss_conf             1689974048874202678763059032044258765-3447898777
Q gi|254780929|r  345 AITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDEN-VMPIAKSLAR  391 (408)
Q Consensus       345 aitifsvgfspdqdtrytlrqcasdpskyyeinsden-vmpiakslar  391 (408)
                      .+.+|.||+.+.  .+-.|++.|++|...|...++-+ +-.+.+.+++
T Consensus       133 gv~v~~vgig~~--~~~~L~~ia~~~~~~~~~~~~~~~L~~~~~~i~~  178 (181)
T d1shux_         133 GASVYCVGVLDF--EQAQLERIADSKEQVFPVKGGFQALKGIINSILA  178 (181)
T ss_dssp             TCEEEEEECSSC--CHHHHHHHSSSGGGEEESSSTTHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCC--CHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf             988999996854--8999999848999659945999999999999986


No 5  
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.08  E-value=5.8  Score=16.79  Aligned_cols=14  Identities=36%  Similarity=1.058  Sum_probs=10.9

Q ss_pred             CCCEECCCCHHHHH
Q ss_conf             43200272023443
Q gi|254780929|r  221 YKNFCMAPYHYSSI  234 (408)
Q Consensus       221 yknfcmapyhyssi  234 (408)
                      +...|.-|||||-|
T Consensus       111 ~~~VC~NPyHy~Rv  124 (126)
T d1ozja_         111 KDEVCVNPYHYQRV  124 (126)
T ss_dssp             CSEEECCGGGEEEC
T ss_pred             CCCEEECCCCHHHC
T ss_conf             98378587236440


No 6  
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.23  E-value=16  Score=13.66  Aligned_cols=43  Identities=16%  Similarity=0.348  Sum_probs=30.1

Q ss_pred             CCEEEEEEEECCCCCCHHHHHHHHCCCCH---HEEEECCCCCHHHHH
Q ss_conf             64168997404887420267876305903---204425876534478
Q gi|254780929|r  343 RDAITIFSVGFSPDQDTRYTLRQCASDPS---KYYEINSDENVMPIA  386 (408)
Q Consensus       343 rdaitifsvgfspdqdtrytlrqcasdps---kyyeinsdenvmpia  386 (408)
                      ...|.+|.+|+.++.|. -.|+..|+.|.   ++|.+++-+....+.
T Consensus       153 ~~gi~i~~vgvg~~~~~-~~L~~iAs~~~~~~~~f~~~~~~~L~~~~  198 (209)
T d1q0pa_         153 EDYLDVYVFGVGPLVNQ-VNINALASKKDNEQHVFKVKDMENLEDVF  198 (209)
T ss_dssp             GGGEEEEEEECSSCCCH-HHHHHHSCCCTTCCCEEETTC--------
T ss_pred             HCCCCEEEECCCCCCCH-HHHHHHHCCCCCCEEEEEECCHHHHHHHH
T ss_conf             66995598427766899-99999974989971599938999999999


No 7  
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.08  E-value=18  Score=13.24  Aligned_cols=78  Identities=13%  Similarity=0.253  Sum_probs=42.2

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCHH--EEEECC
Q ss_conf             677079999734510033302899999999859988751147641689974048874202678763059032--044258
Q gi|254780929|r  301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCASDPSK--YYEINS  378 (408)
Q Consensus       301 sqnkymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdtrytlrqcasdpsk--yyeins  378 (408)
                      ...|..+.+.-|..-.+++-.-+..-+-|+            ...|+||.||+.+.-+. -.|+..|++|++  +|.+.+
T Consensus       114 ~~~k~vivitdg~~~~~~~~~~~~~~~~l~------------~~gv~i~~Vgig~~~~~-~~L~~ia~~~~~~~~~~~~~  180 (202)
T d1ijba_         114 EASRIALLLMASQEPQRMSRNFVRYVQGLK------------KKKVIVIPVGIGPHANL-KQIRLIEKQAPENKAFVLSS  180 (202)
T ss_dssp             TSEEEEEEEECCCCCGGGCTTHHHHHHHHH------------HTTEEEEEEEESTTSCH-HHHHHHHHHCTTCCCEEESS
T ss_pred             CCCCEEEEECCCCCCCCCCHHHHHHHHHHH------------HCCCEEEEEEECCCCCH-HHHHHHHCCCCCCCEEEECC
T ss_conf             775157885346888642168999999999------------85996899985785799-99999851899676899589


Q ss_pred             CCCHHHHHHHHHH
Q ss_conf             7653447898777
Q gi|254780929|r  379 DENVMPIAKSLAR  391 (408)
Q Consensus       379 denvmpiakslar  391 (408)
                      -+..-.+...+..
T Consensus       181 ~~~L~~~~~~i~~  193 (202)
T d1ijba_         181 VDELEQQRDEIVS  193 (202)
T ss_dssp             GGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999999


No 8  
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.60  E-value=18  Score=13.35  Aligned_cols=24  Identities=17%  Similarity=0.541  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             355432333206663886300042
Q gi|254780929|r  153 ISRRKKVMYKQNIGLMIMPFAWDG  176 (408)
Q Consensus       153 isrrkkvmykqniglmimpfawdg  176 (408)
                      |++-.|-+..-.++...|||.|.|
T Consensus       107 iA~iake~g~l~v~ivt~PF~~EG  130 (198)
T d1rq2a1         107 VASIARKLGALTVGVVTRPFSFEG  130 (198)
T ss_dssp             HHHHHHHHTCEEEEEEEECCGGGC
T ss_pred             HHHHHHHCCCCEEEEEECCHHHHH
T ss_conf             999999859928999955817778


No 9  
>d1v9va1 a.29.10.1 (A:8-108) Microtubule-associated serine/threonine-protein kinase 3, MAST3 (KIAA0561) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.92  E-value=21  Score=12.79  Aligned_cols=39  Identities=33%  Similarity=0.406  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHH-HHH
Q ss_conf             6678999987765206833236677412235789999-987
Q gi|254780929|r   49 KTAWLQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQI-EKA   88 (408)
Q Consensus        49 ktawlqevldhviyrtspknlydlreagrdnfirhqi-eka   88 (408)
                      .|+-..|-|.+.|-.-+|.+...+.. |--+|+.||| |-|
T Consensus         3 At~QMEerL~~fi~~~~~~~~~~~aD-gvl~FvhHQiiElA   42 (101)
T d1v9va1           3 ATAQMEGRLQEFLTAYAPGARLALAD-GVLGFIHHQIVELA   42 (101)
T ss_dssp             TTHHHHHHHHHHHHHSCBTTTBCCSC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHH-HHHHHHHHHHHHHH
T ss_conf             67899999999998769724441148-99999999999999


No 10 
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.41  E-value=22  Score=12.71  Aligned_cols=50  Identities=18%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             CEEEEEEEECCCCCCH--------HHHHHHHCCCCHH-E-EEECCCCCHHHHHHHHHHHH
Q ss_conf             4168997404887420--------2678763059032-0-44258765344789877777
Q gi|254780929|r  344 DAITIFSVGFSPDQDT--------RYTLRQCASDPSK-Y-YEINSDENVMPIAKSLARNV  393 (408)
Q Consensus       344 daitifsvgfspdqdt--------rytlrqcasdpsk-y-yeinsdenvmpiakslarnv  393 (408)
                      ..|++|++|..+.-+.        .-.|++.||+|.. | +.+.+-.....+...|...+
T Consensus       131 ~gv~v~~Igvg~~~~~~~~~~~~~~~~L~~Ias~p~~~~~f~v~d~~~L~~i~~~l~~~I  190 (193)
T d1v7pc_         131 DNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQI  190 (193)
T ss_dssp             TTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf             898999999677544444444125999999866987101898189999999999998651


Done!