HHsearch alignment for GI: 254780930 and conserved domain: COG1538
>COG1538 TolC Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=485.72 Aligned_cols=431 Identities=29% Similarity=0.517 Sum_probs=380.2
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99975026899999995647501024677666676862343660998799999999970899899999999999999987
Q gi|254780930|r 13 VLLAGCTVGPEYTKPHMPLLPTQFSIGNSKNLINIDTLKWWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSV 92 (452)
Q Consensus 13 ~~l~gC~~~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~d~~L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a 92 (452)
T Consensus 2 ~~l~~c~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~w~~~~~~~~l~~li~~aL~~~~~l~~a~~~~~~a~a~~~~a 76 (457)
T COG1538 2 LLLAGCALLPPYLAPAA--VPAALAAAAAAAAAA---ATWWEAFNDAQLNQLVNLALAANPDLRVAAAEVEAARAQLRIA 76 (457)
T ss_pred CCCHHHHCCCCCCCCCC--CHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf 44026442863224422--426665442210242---3288886416578998999870956799999999999889998
Q ss_pred HHHHCCCHHHCCCCCCCC-C-----------CCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 542053011101124566-5-----------55444443211101100123-4577888877765556799999999999
Q gi|254780930|r 93 RADLFPSSYASISHRFIP-N-----------LKTNSTGQLDSDWKIDLFGQ-RRHIESSLANLDSAYAQVDIAKLNVISK 159 (452)
Q Consensus 93 ~a~~~P~~~~~~~~~~~~-~-----------~~~~~~~~~~~s~~ldl~G~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 159 (452)
T Consensus 77 ~a~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ldl~gr~~~~~~aA~a~~~aa~~~~~~~~~~l~~~ 155 (457)
T COG1538 77 RAALLPQLSASASYTRQTLAGGPLSSTGTDRNSYGYGLSL-ASWLLDLFGRVRANVRAAEAAAKAARAQLEAARLSLAAE 155 (457)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7420798051023000445567766667665421254446-778668443677999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99876666777889999999999999999878765543234567776532223557989999998568888768776399
Q gi|254780930|r 160 LIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGY 239 (452)
Q Consensus 160 v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~ 239 (452)
T Consensus 156 va~aY~~~~~~~~~~~~a~~~~~~~~~~~~~~~~r~~~G~~~~~dv~qa~a~~~~a~~~l~~~~~~~~~a~~~L~~L~G~ 235 (457)
T COG1538 156 VATAYFDLLAAQEQLALAEETLAAAEEQLELAEKRYDAGLATRLDVLQAEAQLASARAQLAAAQAQLAQARNALARLLGL 235 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999999999999999976997187999999999999999999999999999999998596
Q ss_pred CHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCC---
Q ss_conf 92130001234554433100122104887899730234556555899996430101122221001122221122344---
Q gi|254780930|r 240 PATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSDLYPSLSLNGSIALTHDNS--- 316 (452)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~RPdi~~a~~~~~~a~~~i~~a~a~~~P~i~l~~~~~~~~~~~--- 316 (452)
T Consensus 236 ~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~l~~rpdi~aA~~~l~aA~a~i~~a~a~~~P~lsL~a~~~~~~~~~~~~ 312 (457)
T COG1538 236 EPGELLDAPEPEA---LPALPPVLPDGLPSEALARRPDILAAEAQLAAANANIGAARAAFLPTLSLTASYGRSSTNLSGL 312 (457)
T ss_pred CCCCCCCCCCCCC---CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
T ss_conf 9653323346322---2225667723349999982988999999999999889999744268545751002135666534
Q ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54454104431122345101245665677999999999999999999999999999999999999999999999999999
Q gi|254780930|r 317 FPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKS 396 (452)
Q Consensus 317 ~~~~~~~~~~g~~l~~Pif~gg~~~a~i~~a~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~ 396 (452)
T Consensus 313 ~~~~~~~~~~g~~lslPif~gG~~~a~v~~A~a~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~a~~~~v~~a~~~ 392 (457)
T COG1538 313 FGSSSRSWSVGPGLSLPIFDGGRLRARVRQAEAQYDAALAQYEQTVLTARQEVADALAALEAALEQLQALRQAVEAAQEA 392 (457)
T ss_pred CCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 46765414774578986368853168999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999998718832899999999999999999999999999999999984999998
Q gi|254780930|r 397 MSLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452 (452)
Q Consensus 397 ~~~~~~~y~~G~~~~~dll~a~~~~~~a~~~~~~a~~~~~~a~~~L~~AlGGg~~~ 452 (452)
T Consensus 393 ~~~~~~~y~~G~~t~ldvL~Aq~~l~~a~~~~~~a~~~~~~a~~~L~~alG~~~~~ 448 (457)
T COG1538 393 LELARERYQAGVRTLLDVLDAQRTLLQARQALLQARYDYLVALVNLYKALGGGWDE 448 (457)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999758617999999999999999999999999999999999985688501