HHsearch alignment for GI: 254780930 and conserved domain: TIGR01844
>TIGR01844 type_I_sec_TolC type I secretion outer membrane protein, TolC family; InterPro: IPR010130 Members of group of are outer membrane proteins from the TolC family within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT family, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (Escherichia coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa).; GO: 0015031 protein transport, 0019867 outer membrane.
Probab=100.00 E-value=0 Score=373.26 Aligned_cols=387 Identities=17% Similarity=0.238 Sum_probs=337.4
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC---------------CCCCCCCCCCC
Q ss_conf 799999999970899899999999999999987542053011101124566555---------------44444321110
Q gi|254780930|r 60 SLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLK---------------TNSTGQLDSDW 124 (452)
Q Consensus 60 ~L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~~~~~~~~---------------~~~~~~~~~s~ 124 (452)
T Consensus 4 ~L~~a~~~A~~~NP~l~~a~~~~~a~~e~~~~AraallP~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Q 83 (437)
T TIGR01844 4 TLLDAVELALANNPELRAARAQRDAGEEKVAQARAALLPQLGLTANIGYSNTNVTETRRRADGKIKRDLNSRSSTLTLSQ 83 (437)
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCEEEEEEEE
T ss_conf 78899999974396589999875777643444311687435533316643454554421057655540046158888764
Q ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11001234-57788887776555679999999999999876666777889999999999999999878765543234567
Q gi|254780930|r 125 KIDLFGQR-RHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKL 203 (452)
Q Consensus 125 ~ldl~G~~-~~~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~ 203 (452)
T Consensus 84 ~lfdG~~~~~~~~~~~~~~~~~~~~l~~~~q~~~~~~~~aY~~v~~~q~~l~l~~~n~~a~~~ql~~~~~R~~~G~~~~t 163 (437)
T TIGR01844 84 PLFDGGSTFNDVRAAEAAALAARENLRATAQDLILRVAEAYVEVLRAQEILALAEANLAALKEQLDLARARFDVGEGTRT 163 (437)
T ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 01646999999999889999999999988879999999999999999999999999999999999999999854687503
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 7765322235579899999985688887687763999--21300012345544331001221048878997302345565
Q gi|254780930|r 204 SLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYP--ATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQ 281 (452)
Q Consensus 204 d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~RPdi~~a 281 (452)
T Consensus 164 DV~q~eAR~~~A~a~l~~a~~~l~~a~~~l~~l~G~pL~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~A~~~~P~llaa 242 (437)
T TIGR01844 164 DVLQAEARYASARAQLIQAQANLDDAKAQLRRLVGQPLEISELAPLAVPSLPAELPAPTSDLD-QLLEIAEASNPALLAA 242 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCHH-HHHHHHHHHHHHHHHH
T ss_conf 689999999999999999999899999999996589988357653676672010342248989-9999999854899999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCC-------------CCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5589999643010112222100112222112234454-------------454104431122345101245665677999
Q gi|254780930|r 282 EKKLADSVAKIGIAKSDLYPSLSLNGSIALTHDNSFP-------------GYNTHWSFGPKLYLPIFDKGKIKSNIRRAE 348 (452)
Q Consensus 282 ~~~~~~a~~~i~~a~a~~~P~i~l~~~~~~~~~~~~~-------------~~~~~~~~g~~l~~Pif~gg~~~a~i~~a~ 348 (452)
T Consensus 243 ~~~~~~A~~~~~~~~A~~~PTl~l~As~~~~~~~~~~~~~~g~~~~~~~D~~~~~~s~~l~~~~PlY~GG~~~a~~rqA~ 322 (437)
T TIGR01844 243 QAAVNAARYEVEQARAGHLPTLSLTASTGKSDTASGGSGNSGAATTQQYDDYSDTDSIGLNVSIPLYQGGATSAQVRQAK 322 (437)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCHHHHHHHHH
T ss_conf 99999999999986167874132001024125543433121234433356401000356777520223766189999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999998718832899999999999999999
Q gi|254780930|r 349 SSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILDIERATAKVEVDL 428 (452)
Q Consensus 349 ~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll~a~~~~~~a~~~~ 428 (452)
T Consensus 323 ~~~~~s~~~~e~~~r~v~~~~~~a~~~~~~~~~~~~a~~~~v~sa~~~~~~~~~~~~vG~Rt~LDvLna~~eLy~A~~~l 402 (437)
T TIGR01844 323 HQLNQSRSTLESQKRTVRQQVRNAWSQLEAAAASVQAYEDQVASAQKALDAYRQEYQVGTRTLLDVLNAENELYQARQAL 402 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999998789999999999999998779999999999999999999999988347531004475589999999999
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999849
Q gi|254780930|r 429 SIAKRQLAKSYVDLYIAIG 447 (452)
Q Consensus 429 ~~a~~~~~~a~~~L~~AlG 447 (452)
T Consensus 403 ~~ary~~~~a~~~l~~A~G 421 (437)
T TIGR01844 403 VQARYDYLLAQLRLLSATG 421 (437)
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 8668999999999998716