HHsearch alignment for GI: 254780930 and conserved domain: TIGR01844
>TIGR01844 type_I_sec_TolC type I secretion outer membrane protein, TolC family; InterPro: IPR010130 Members of group of are outer membrane proteins from the TolC family within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT family, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (Escherichia coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa).; GO: 0015031 protein transport, 0019867 outer membrane.
Probab=99.82 E-value=1e-17 Score=133.62 Aligned_cols=180 Identities=14% Similarity=0.184 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCC------------------CCCCCCCCC
Q ss_conf 79999999997089989999999999999998754205301110112456655------------------544444321
Q gi|254780930|r 60 SLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNL------------------KTNSTGQLD 121 (452)
Q Consensus 60 ~L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~~~~~~~------------------~~~~~~~~~ 121 (452)
T Consensus 224 ~~~~~~~~A~~~~P~llaa~~~~~~A~~~~~~~~A~~~PTl~l~As~~~~~~~~~~~~~~g~~~~~~~D~~~~~~s~~l~ 303 (437)
T TIGR01844 224 DLDQLLEIAEASNPALLAAQAAVNAARYEVEQARAGHLPTLSLTASTGKSDTASGGSGNSGAATTQQYDDYSDTDSIGLN 303 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 98999999998548999999999999999998616787413200102412554343312123443335640100035677
Q ss_pred CCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 110110012345-7788887776555679999999999999876666777889999999999999999878765543234
Q gi|254780930|r 122 SDWKIDLFGQRR-HIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGAT 200 (452)
Q Consensus 122 ~s~~ldl~G~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~ 200 (452)
T Consensus 304 ~~~PlY~GG~~~a~~rqA~~~~~~s~~~~e~~~r~v~~~~~~a~~~~~~~~~~~~a~~~~v~sa~~~~~~~~~~~~vG~R 383 (437)
T TIGR01844 304 VSIPLYQGGATSAQVRQAKHQLNQSRSTLESQKRTVRQQVRNAWSQLEAAAASVQAYEDQVASAQKALDAYRQEYQVGTR 383 (437)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 75202237661899999999999999999878999999999999999877999999999999999999999998834753
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 567776532223557989999998568888768776399
Q gi|254780930|r 201 SKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGY 239 (452)
Q Consensus 201 ~~~d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~ 239 (452)
T Consensus 384 t~LDvLna~~eLy~A~~~l~~ary~~~~a~~~l~~A~G~ 422 (437)
T TIGR01844 384 TLLDVLNAENELYQARQALVQARYDYLLAQLRLLSATGT 422 (437)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 100447558999999999986689999999999987166