Query gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus Liberibacter asiaticus str. psy62] Match_columns 452 No_of_seqs 237 out of 6667 Neff 9.6 Searched_HMMs 33803 Date Wed Jun 1 21:03:54 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780930.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1yc9_A VCEC, multidrug resist 100.0 2.1E-28 6.4E-33 202.9 24.6 219 45-299 19-238 (238) 2 >3d5k_A OPRM, outer membrane p 99.9 1.1E-23 3.3E-28 172.1 23.2 210 56-299 1-211 (211) 3 >1yc9_A VCEC, multidrug resist 99.7 9E-16 2.7E-20 120.4 18.1 117 336-452 1-117 (120) 4 >3d5k_A OPRM, outer membrane p 99.7 1.4E-14 4E-19 112.7 17.7 114 336-449 1-114 (114) 5 >1ek9_A Outer membrane protein 99.6 2.1E-14 6.2E-19 111.5 16.5 178 61-277 3-181 (181) 6 >1ek9_A Outer membrane protein 99.6 1.2E-13 3.6E-18 106.5 17.7 111 337-447 42-152 (153) 7 >1yc9_A VCEC, multidrug resist 99.3 1.2E-09 3.7E-14 80.3 20.1 144 268-449 39-182 (238) 8 >3d5k_A OPRM, outer membrane p 99.3 1.6E-09 4.6E-14 79.7 20.4 148 270-452 12-159 (211) 9 >1ek9_A Outer membrane protein 99.2 1.2E-08 3.5E-13 73.9 19.8 146 61-239 7-153 (153) 10 >1yc9_A VCEC, multidrug resist 99.2 2.5E-09 7.4E-14 78.3 14.3 115 129-243 2-117 (120) 11 >3d5k_A OPRM, outer membrane p 99.1 2.6E-09 7.7E-14 78.2 14.1 111 129-239 2-113 (114) 12 >1ek9_A Outer membrane protein 99.0 1.7E-07 5.1E-12 66.3 17.9 116 336-451 33-148 (181) 13 >1yc9_A VCEC, multidrug resist 97.2 0.0001 3E-09 48.2 1.5 39 297-335 43-84 (84) 14 >3d5k_A OPRM, outer membrane p 96.8 0.00038 1.1E-08 44.4 1.2 36 300-335 43-81 (81) 15 >1ek9_A Outer membrane protein 84.3 0.34 1E-05 25.2 0.9 47 290-336 35-94 (94) 16 >2f1m_A Acriflavine resistance 77.8 3.5 0.0001 18.5 8.7 74 168-241 43-116 (146) 17 >2vx5_A Cellvibrio japonicus m 57.5 3.4 0.0001 18.6 0.7 13 1-13 1-13 (396) 18 >2w7y_A FCSSBP, probable sugar 56.0 4.8 0.00014 17.6 1.2 18 60-77 58-75 (185) 19 >3fpp_A Macrolide-specific eff 52.1 11 0.00033 15.2 11.3 71 167-237 49-119 (161) 20 >3k6v_A Solute-binding protein 49.4 2.2 6.4E-05 19.9 -1.4 47 60-106 56-102 (185) 21 >3c9h_A ABC transporter, subst 48.3 2.3 6.9E-05 19.7 -1.4 62 1-79 1-65 (355) 22 >3bxw_B Chitinase domain-conta 36.9 13 0.00039 14.8 1.0 24 1-24 1-25 (128) 23 >3dw0_A Class A carbapenemase 36.6 8.9 0.00026 15.9 0.1 19 1-19 1-19 (294) 24 >2f2f_C CDT C, cytolethal dist 26.2 27 0.00081 12.7 1.2 19 5-23 3-21 (186) 25 >2w5v_A Alkaline phosphatase; 25.0 19 0.00057 13.7 0.2 20 1-20 1-20 (342) 26 >3e4r_A Nitrate transport prot 22.9 27 0.0008 12.7 0.6 19 1-19 1-20 (181) No 1 >>1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae} (A:1-69,A:115-283) Probab=99.97 E-value=2.1e-28 Score=202.94 Aligned_cols=219 Identities=19% Similarity=0.339 Sum_probs=193.8 Q ss_pred CCCCCHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 67686234366099879999999997089989999999999999998754205301110112456655544444321110 Q gi|254780930|r 45 INIDTLKWWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTNSTGQLDSDW 124 (452) Q Consensus 45 ~~~~~~~ww~~~~d~~L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~~~~~~~~~~~~~~~~~s~ 124 (452) ..++..+||+.|+||.|+.+|+.|+.+||+|.+|..+++.|++....+++ T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 68 (238) T 1yc9_A 19 MDWPSANWWQRYQDAQLNHLIEEALQHSPSLCMAMARLKGAQGFARQAGA------------------------------ 68 (238) T ss_dssp --CCCTTGGGGGCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHG------------------------------ T ss_pred CCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC------------------------------ T ss_conf 79981679876698889999999996399999999999999999999647------------------------------ Q ss_pred CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 110012345-7788887776555679999999999999876666777889999999999999999878765543234567 Q gi|254780930|r 125 KIDLFGQRR-HIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKL 203 (452) Q Consensus 125 ~ldl~G~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~ 203 (452) .||+++ .++.+....+.++.+++.++.++..+|.++|++++..++.+++.++.++..++.++.++.+++.|.++.. T Consensus 69 ---~~Gk~~a~~~~A~~~~~~a~~~~~~~~~~l~~~v~~aY~~ll~~q~~l~i~~~~l~~~~~~~~~~~~r~~~G~~s~~ 145 (238) T 1yc9_A 69 ---IWGKNRAAVVAATSELAAAEAESVAARLMISTSIANAYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLG 145 (238) T ss_dssp ---GTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHH T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf ---47777788999999999999999999999999999999999999888999999999999999999988642101233 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 77653222355798999999856888876877639992130001234554433100122104887899730234556555 Q gi|254780930|r 204 SLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEK 283 (452) Q Consensus 204 d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~RPdi~~a~~ 283 (452) |+.+++.++..++..+..++.++..++..|..++|.++.............+.+ .+....++..++.+||||+.++. T Consensus 146 Dl~~aq~~l~~a~~~l~~ae~~~~~a~~~L~~LlG~~~~~~~~l~~~~~~~~~~---~~~~~~l~~~al~~rPdl~~a~~ 222 (238) T 1yc9_A 146 SVSQAKAVAASVEAELLGIQESIQLQKNALAALVGQGPDRAASIEEPHITLTSR---YGLPSEAGVGLLGHRADITAARW 222 (238) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCCCCCCCCCCC---C-------CGGGTTCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHCCHHHHHHH T ss_conf 556554444346668999999999999889998477874112345543222344---46806667778862100224677 Q ss_pred HHHHHHHHHCCHHHHH Q ss_conf 8999964301011222 Q gi|254780930|r 284 KLADSVAKIGIAKSDL 299 (452) Q Consensus 284 ~~~~a~~~i~~a~a~~ 299 (452) ++++++.+++.++++| T Consensus 223 ~i~aa~~~i~~aka~y 238 (238) T 1yc9_A 223 RAEAAAQQVGIAQAQF 238 (238) T ss_dssp HHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHH T ss_conf 8999998676777631 No 2 >>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic resistance, lipoprotein, palmitate, transmembrane, transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A (A:44-85,A:128-296) Probab=99.93 E-value=1.1e-23 Score=172.12 Aligned_cols=210 Identities=22% Similarity=0.372 Sum_probs=186.6 Q ss_pred HCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-H Q ss_conf 099879999999997089989999999999999998754205301110112456655544444321110110012345-7 Q gi|254780930|r 56 FNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTNSTGQLDSDWKIDLFGQRR-H 134 (452) Q Consensus 56 ~~d~~L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~~~~~~~~~~~~~~~~~s~~ldl~G~~~-~ 134 (452) |.||+|.++|-.|++||.|++.+...+++.++++...++.+ .+||+++ . T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~Gk~~~~ 50 (211) T 3d5k_A 1 FRDPQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQRADL------------------------------FLFGRLRSL 50 (211) T ss_dssp BCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTT------------------------------STTSHHHHH T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC------------------------------CHHHHHHHH T ss_conf 59888999999999709999999999999999999974330------------------------------845667776 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 78888777655567999999999999987666677788999999999999999987876554323456777653222355 Q gi|254780930|r 135 IESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKS 214 (452) Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~~~~ 214 (452) ++.+....+.++.++..++.+++.+|.++||+++.+++.+++.++.++..++.++.++.+++.|.++..|+.+++.++.+ T Consensus 51 ~~~A~~~~~~a~~~~~~~~~~l~~eV~~aY~~ll~aq~~l~~~~~~l~~~~~~l~~~~~r~~~G~~s~~D~~~aq~~l~~ 130 (211) T 3d5k_A 51 RDQALEQYLATEQAQRSAQTTLVASVATAYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEG 130 (211) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 66788889998999999999999999999999999888899999999999999887520102885200001478899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 79899999985688887687763999213000123455443310012210488789973023455655589999643010 Q gi|254780930|r 215 IESDIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGI 294 (452) Q Consensus 215 ~~~~l~~~~~~~~~a~~~L~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~RPdi~~a~~~~~~a~~~i~~ 294 (452) .+.++..++.++..++..|..++|.|++............ ...+....+...++.+||||+.++.+++.+..+++. T Consensus 131 ~~~~l~~a~~~~~~a~~~L~~LlG~~~~~~~~~~~~~~~~----~~~~~~~~~~~~al~~rPdl~~a~~~i~~a~~~v~~ 206 (211) T 3d5k_A 131 ARATLAQYTRLVAQDQNALVLLLGSGIPANLPQGLGLDQT----LLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGA 206 (211) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCCCCCCTTSC----CBCCCCCCCGGGHHHHCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 8889999999899999999998389986321000122234----687784467999998520001259999999999999 Q ss_pred HHHHH Q ss_conf 11222 Q gi|254780930|r 295 AKSDL 299 (452) Q Consensus 295 a~a~~ 299 (452) +|++| T Consensus 207 aka~y 211 (211) T 3d5k_A 207 ARAAF 211 (211) T ss_dssp HHTTS T ss_pred HHHHH T ss_conf 99764 No 3 >>1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae} (A:323-442) Probab=99.73 E-value=9e-16 Score=120.43 Aligned_cols=117 Identities=21% Similarity=0.334 Sum_probs=114.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 12456656779999999999999999999999999999999999999999999999999999999999871883289999 Q gi|254780930|r 336 DKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDIL 415 (452) Q Consensus 336 ~gg~~~a~i~~a~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll 415 (452) +||+++++++.++...+.+..+++++..++..+|.++|.++..+.+++...++.++.+++.++..+.+|+.|.++.+|++ T Consensus 1 sGG~~~~~v~~a~~~~~~a~~~~~~~~~~i~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~~~~d~l 80 (120) T 1yc9_A 1 TGGRLEGQLTSAEARYQEAVAQYNGTLVQALHEIADVVTSSQALQARINKTEQAVQQAEQALHIATNRYQGGLATYLDVL 80 (120) T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 14751015999999999999999999999999999999999999999999999999999999999999987996199999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 9999999999999999999999999999984999998 Q gi|254780930|r 416 DIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452 (452) Q Consensus 416 ~a~~~~~~a~~~~~~a~~~~~~a~~~L~~AlGGg~~~ 452 (452) +++..+.+++.+++++++++..+.+.|.+++||||++ T Consensus 81 ~a~~~l~~a~~~~~~a~~~~~~a~~~L~~~~Gg~~~~ 117 (120) T 1yc9_A 81 VAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFET 117 (120) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 9999999999999999999999999999982799898 No 4 >>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic resistance, lipoprotein, palmitate, transmembrane, transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A (A:336-449) Probab=99.67 E-value=1.4e-14 Score=112.75 Aligned_cols=114 Identities=20% Similarity=0.318 Sum_probs=112.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 12456656779999999999999999999999999999999999999999999999999999999999871883289999 Q gi|254780930|r 336 DKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDIL 415 (452) Q Consensus 336 ~gg~~~a~i~~a~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll 415 (452) +||+++++++.+++..+++..+++.+.+++..+|.+++..+..+.+++..+++.++.+++.++.++.+|+.|.++.+||+ T Consensus 1 ngg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~s~~dll 80 (114) T 3d5k_A 1 TAGSLRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLADKRYRTGVDNYLTLL 80 (114) T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 00002225788999999999999999999999999999999999999999999999999999999999986986099999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9999999999999999999999999999984999 Q gi|254780930|r 416 DIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSG 449 (452) Q Consensus 416 ~a~~~~~~a~~~~~~a~~~~~~a~~~L~~AlGGg 449 (452) ++++++.+++.+++++++++..+.+.|.+++||| T Consensus 81 ~a~~~~~~a~~~~~~a~~~~~~a~~~L~~~~Ggg 114 (114) T 3d5k_A 81 DAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGG 114 (114) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999999999999999999999999971799 No 5 >>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} (A:1-34,A:78-202,A:407-428) Probab=99.65 E-value=2.1e-14 Score=111.50 Aligned_cols=178 Identities=10% Similarity=0.087 Sum_probs=146.2 Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHH Q ss_conf 9999999997089989999999999999998754205301110112456655544444321110110012345-778888 Q gi|254780930|r 61 LNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTNSTGQLDSDWKIDLFGQRR-HIESSL 139 (452) Q Consensus 61 L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~~~~~~~~~~~~~~~~~s~~ldl~G~~~-~~~~a~ 139 (452) |.+.-+.+--.||+++.+..+-..+-..+.. .|+++ .++.+. T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~krr~~i~~A~ 45 (181) T 1ek9_A 3 LXQVYQQARLSNPELRKSAADRDAAFEKINE-------------------------------------AXSKWRALTLQE 45 (181) T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHHHH T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-------------------------------------HCCHHHHHHHHH T ss_conf 8999999997299999999999999999999-------------------------------------770589999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 77765556799999999999998766667778899999999999999998787655432345677765322235579899 Q gi|254780930|r 140 ANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDI 219 (452) Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~~~~~~~~l 219 (452) ...++++++++.++.+++.+|+.+||+++.+++.+++.+++++..++.++.++.+++.|.++..|+.+++.++..++..+ T Consensus 46 ~~~~~a~~~~~~~~~~l~~~v~~aY~~l~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~G~~s~~dl~~a~a~~~~~~~~l 125 (181) T 1ek9_A 46 KAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANE 125 (181) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999999999999999998758886879999987899999999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHH Q ss_conf 9999856888876877639992130001234554433100122104887899730234 Q gi|254780930|r 220 PTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPD 277 (452) Q Consensus 220 ~~~~~~~~~a~~~L~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~RPd 277 (452) ..++.++..+...|..++|.++.............+ ....+....++..++.+||+ T Consensus 126 ~~a~~~~~~a~~~L~~llg~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~Al~nRPE 181 (181) T 1ek9_A 126 LTARNNLDNAVEQLRQITGNYYPELAALNVENFKLN--EQDLLALNNALSKPVSTNPE 181 (181) T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSEEEEECTTTCCCC--HHHHHHHHHTEEEEEESSCC T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHCCCCCCCCC T ss_conf 999999999999999872898410123574212399--88999999864699899988 No 6 >>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} (A:203-243,A:295-406) Probab=99.62 E-value=1.2e-13 Score=106.53 Aligned_cols=111 Identities=16% Similarity=0.272 Sum_probs=109.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 24566567799999999999999999999999999999999999999999999999999999999998718832899999 Q gi|254780930|r 337 KGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILD 416 (452) Q Consensus 337 gg~~~a~i~~a~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll~ 416 (452) ||+++++++.+++.++.+..+++.+.+.+..+|.++|..+....+++..+++.+..+++.++.++.+|+.|.++.+||++ T Consensus 42 GG~~~a~v~~Aka~~~~a~~~~~~~~~~i~~eV~~A~~~l~~a~~~l~~~~~~i~~A~~~~~~~~~rY~~G~~t~~Dll~ 121 (153) T 1ek9_A 42 GGXVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAXEAGYSVGTRTIVDVLD 121 (153) T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 14477899999999999999999999999999999999999999999999999999999999999999869960999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999999999849 Q gi|254780930|r 417 IERATAKVEVDLSIAKRQLAKSYVDLYIAIG 447 (452) Q Consensus 417 a~~~~~~a~~~~~~a~~~~~~a~~~L~~AlG 447 (452) ++..+++++.+++++++++..+.+.|++++| T Consensus 122 Aq~~l~~Aq~~l~~A~~~~~~a~~~L~~a~G 152 (153) T 1ek9_A 122 ATTTLYNAKQELANARYNYLINQLNIKSALG 152 (153) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999999999999999999999999868 No 7 >>1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae} (A:1-69,A:115-283) Probab=99.33 E-value=1.2e-09 Score=80.33 Aligned_cols=144 Identities=16% Similarity=0.149 Sum_probs=132.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH Q ss_conf 78997302345565558999964301011222210011222211223445445410443112234510124566567799 Q gi|254780930|r 268 PADLIRNRPDIRYQEKKLADSVAKIGIAKSDLYPSLSLNGSIALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRA 347 (452) Q Consensus 268 ~~~~l~~RPdi~~a~~~~~~a~~~i~~a~a~~~P~i~l~~~~~~~~~~~~~~~~~~~~~g~~l~~Pif~gg~~~a~i~~a 347 (452) -.++|.+.|++..++.+++.+......+.+. ||++++.++.+ T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~Gk~~a~~~~A 80 (238) T 1yc9_A 39 IEEALQHSPSLCMAMARLKGAQGFARQAGAI--------------------------------------WGKNRAAVVAA 80 (238) T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHGG--------------------------------------TSHHHHHHHHH T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC--------------------------------------HHHHHHHHHHH T ss_conf 9999963999999999999999999996474--------------------------------------77777889999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999999871883289999999999999999 Q gi|254780930|r 348 ESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILDIERATAKVEVD 427 (452) Q Consensus 348 ~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll~a~~~~~~a~~~ 427 (452) +...+.+..+++.+..++..+|..+|.++....+.+...+..+...++.++..+.+|+.|.++..|++.++..+.+++.. T Consensus 81 ~~~~~~a~~~~~~~~~~l~~~v~~aY~~ll~~q~~l~i~~~~l~~~~~~~~~~~~r~~~G~~s~~Dl~~aq~~l~~a~~~ 160 (238) T 1yc9_A 81 TSELAAAEAESVAARLMISTSIANAYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAE 160 (238) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999888999999999999999999988642101233556554444346668 Q ss_pred HHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9999999999999999984999 Q gi|254780930|r 428 LSIAKRQLAKSYVDLYIAIGSG 449 (452) Q Consensus 428 ~~~a~~~~~~a~~~L~~AlGGg 449 (452) +..++.++..+...|...+|-. T Consensus 161 l~~ae~~~~~a~~~L~~LlG~~ 182 (238) T 1yc9_A 161 LLGIQESIQLQKNALAALVGQG 182 (238) T ss_dssp HHHHHHHHHHHHHHHHHHTTCC T ss_pred HHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999999998899984778 No 8 >>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic resistance, lipoprotein, palmitate, transmembrane, transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A (A:44-85,A:128-296) Probab=99.32 E-value=1.6e-09 Score=79.67 Aligned_cols=148 Identities=19% Similarity=0.223 Sum_probs=131.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH Q ss_conf 99730234556555899996430101122221001122221122344544541044311223451012456656779999 Q gi|254780930|r 270 DLIRNRPDIRYQEKKLADSVAKIGIAKSDLYPSLSLNGSIALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAES 349 (452) Q Consensus 270 ~~l~~RPdi~~a~~~~~~a~~~i~~a~a~~~P~i~l~~~~~~~~~~~~~~~~~~~~~g~~l~~Pif~gg~~~a~i~~a~~ 349 (452) -+++++-|++.+-..+++-.+++++.++ .+|+||++.+.++.++. T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~Gk~~~~~~~A~~ 56 (211) T 3d5k_A 12 VALENNRDLRVAALNVEAFRAQYRIQRA-----------------------------------DLFLFGRLRSLRDQALE 56 (211) T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHH-----------------------------------TTSTTSHHHHHHHHHHH T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHH-----------------------------------CCCHHHHHHHHHHHHHH T ss_conf 9997099999999999999999999743-----------------------------------30845667776667888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999999999999999999999999987188328999999999999999999 Q gi|254780930|r 350 SAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILDIERATAKVEVDLS 429 (452) Q Consensus 350 ~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll~a~~~~~~a~~~~~ 429 (452) ..+.+..+++.+..++..+|.++|.++....+.+...++.+...++.++.++.+|+.|.++..|+..++..+.+.+..+. T Consensus 57 ~~~~a~~~~~~~~~~l~~eV~~aY~~ll~aq~~l~~~~~~l~~~~~~l~~~~~r~~~G~~s~~D~~~aq~~l~~~~~~l~ 136 (211) T 3d5k_A 57 QYLATEQAQRSAQTTLVASVATAYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLA 136 (211) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 89998999999999999999999999999888899999999999999887520102885200001478899999888999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99999999999999984999998 Q gi|254780930|r 430 IAKRQLAKSYVDLYIAIGSGYNP 452 (452) Q Consensus 430 ~a~~~~~~a~~~L~~AlGGg~~~ 452 (452) .++.++..+...|...+|...++ T Consensus 137 ~a~~~~~~a~~~L~~LlG~~~~~ 159 (211) T 3d5k_A 137 QYTRLVAQDQNALVLLLGSGIPA 159 (211) T ss_dssp HHHHHHHHHHHHHHHHHTSCCCT T ss_pred HHHHHHHHHHHHHHHHHCCCCCC T ss_conf 99998999999999983899863 No 9 >>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} (A:203-243,A:295-406) Probab=99.20 E-value=1.2e-08 Score=73.92 Aligned_cols=146 Identities=18% Similarity=0.254 Sum_probs=134.3 Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHH Q ss_conf 9999999997089989999999999999998754205301110112456655544444321110110012345-778888 Q gi|254780930|r 61 LNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTNSTGQLDSDWKIDLFGQRR-HIESSL 139 (452) Q Consensus 61 L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~~~~~~~~~~~~~~~~~s~~ldl~G~~~-~~~~a~ 139 (452) .+.++..|-+.|.++..++..-..++.++..+.. -+|+++ .++.+. T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~GG~~~a~v~~Ak 53 (153) T 1ek9_A 7 VNALLKEAEKRNLSLLQARLSQDLAREQIRQAQD---------------------------------GGGXVNSQVKQAQ 53 (153) T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHG---------------------------------GTTHHHHHHHHHH T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHH T ss_conf 2379999986699999999999999999999877---------------------------------0144778999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 77765556799999999999998766667778899999999999999998787655432345677765322235579899 Q gi|254780930|r 140 ANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDI 219 (452) Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~~~~~~~~l 219 (452) ..++.++..++.++..+..+|..+|.++....+.+.+.++.++.+++.+++.+.+|+.|.++..|++.++..+.+++..+ T Consensus 54 a~~~~a~~~~~~~~~~i~~eV~~A~~~l~~a~~~l~~~~~~i~~A~~~~~~~~~rY~~G~~t~~Dll~Aq~~l~~Aq~~l 133 (153) T 1ek9_A 54 YNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAXEAGYSVGTRTIVDVLDATTTLYNAKQEL 133 (153) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999999999999999999999869960999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHCCC Q ss_conf 99998568888768776399 Q gi|254780930|r 220 PTLEKSFRMNVHNISTLLGY 239 (452) Q Consensus 220 ~~~~~~~~~a~~~L~~l~G~ 239 (452) ..++.++..+...|..++|. T Consensus 134 ~~A~~~~~~a~~~L~~a~GT 153 (153) T 1ek9_A 134 ANARYNYLINQLNIKSALGT 153 (153) T ss_dssp HHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999998689 No 10 >>1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae} (A:323-442) Probab=99.15 E-value=2.5e-09 Score=78.31 Aligned_cols=115 Identities=13% Similarity=0.154 Sum_probs=108.3 Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 12345-77888877765556799999999999998766667778899999999999999998787655432345677765 Q gi|254780930|r 129 FGQRR-HIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVK 207 (452) Q Consensus 129 ~G~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~ 207 (452) +|+.+ .++.+....+.++.+++.++.++..+|..+|.++..+.+.+.+.++.++..++.++.++.+|+.|.++..|++. T Consensus 2 GG~~~~~v~~a~~~~~~a~~~~~~~~~~i~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~~~~d~l~ 81 (120) T 1yc9_A 2 GGRLEGQLTSAEARYQEAVAQYNGTLVQALHEIADVVTSSQALQARINKTEQAVQQAEQALHIATNRYQGGLATYLDVLV 81 (120) T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 47510159999999999999999999999999999999999999999999999999999999999999879961999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 322235579899999985688887687763999213 Q gi|254780930|r 208 LEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPATE 243 (452) Q Consensus 208 a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~~~~~ 243 (452) ++.++.+++..+.+++.++..+...|..++|.+.+. T Consensus 82 a~~~l~~a~~~~~~a~~~~~~a~~~L~~~~Gg~~~~ 117 (120) T 1yc9_A 82 AEESLLNNQRALVNLQSRAFSLDLALIHALGGGFET 117 (120) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 999999999999999999999999999982799898 No 11 >>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic resistance, lipoprotein, palmitate, transmembrane, transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A (A:336-449) Probab=99.14 E-value=2.6e-09 Score=78.22 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=106.9 Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 12345-77888877765556799999999999998766667778899999999999999998787655432345677765 Q gi|254780930|r 129 FGQRR-HIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVK 207 (452) Q Consensus 129 ~G~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~ 207 (452) ||+++ .++.++...+.++.+++.++.++..+|..+|+++..+.+.+.+.++.++..++.++.++.+|+.|.++..|++. T Consensus 2 gg~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~s~~dll~ 81 (114) T 3d5k_A 2 AGSLRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLADKRYRTGVDNYLTLLD 81 (114) T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 00022257889999999999999999999999999999999999999999999999999999999999869860999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 32223557989999998568888768776399 Q gi|254780930|r 208 LEAEIKSIESDIPTLEKSFRMNVHNISTLLGY 239 (452) Q Consensus 208 a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~ 239 (452) ++..+.+++..+.+++.++..++..|..++|. T Consensus 82 a~~~~~~a~~~~~~a~~~~~~a~~~L~~~~Gg 113 (114) T 3d5k_A 82 AQRSLFTAQQQLITDRLNQLTSEVNLYKALGG 113 (114) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999999999999997179 No 12 >>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} (A:1-34,A:78-202,A:407-428) Probab=98.98 E-value=1.7e-07 Score=66.31 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=110.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 12456656779999999999999999999999999999999999999999999999999999999999871883289999 Q gi|254780930|r 336 DKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDIL 415 (452) Q Consensus 336 ~gg~~~a~i~~a~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll 415 (452) ..|+++..++.++...+.+..+++.+..++..+|..+|.++..+.+.+...++.+...++.++..+.+|+.|..+..|+. T Consensus 33 ~~~krr~~i~~A~~~~~~a~~~~~~~~~~l~~~v~~aY~~l~~a~~~l~~a~~~l~~~~~~~~~~~~~~~~G~~s~~dl~ 112 (181) T 1ek9_A 33 EAXSKWRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQ 112 (181) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHH T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 97705899999999999999999999999999999999999999999999999999999999999999875888687999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 999999999999999999999999999998499999 Q gi|254780930|r 416 DIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYN 451 (452) Q Consensus 416 ~a~~~~~~a~~~~~~a~~~~~~a~~~L~~AlGGg~~ 451 (452) .++..+..++.++..++.++..+...|...+|...+ T Consensus 113 ~a~a~~~~~~~~l~~a~~~~~~a~~~L~~llg~~~~ 148 (181) T 1ek9_A 113 NARAQYDTVLANELTARNNLDNAVEQLRQITGNYYP 148 (181) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 998789999999999999999999999987289841 No 13 >>1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae} (A:70-114,A:284-322) Probab=97.25 E-value=0.0001 Score=48.22 Aligned_cols=39 Identities=36% Similarity=0.708 Sum_probs=34.3 Q ss_pred HHHHHHCCCCCCCCCCC---CCCCCCCCCEEEEECCCCCCCC Q ss_conf 22221001122221122---3445445410443112234510 Q gi|254780930|r 297 SDLYPSLSLNGSIALTH---DNSFPGYNTHWSFGPKLYLPIF 335 (452) Q Consensus 297 a~~~P~i~l~~~~~~~~---~~~~~~~~~~~~~g~~l~~Pif 335 (452) -++||+|+|+|++|+.+ .+++...+..|++|++++|||| T Consensus 43 ~~~YPsISLTGslGfeS~~ls~LFss~S~~WSIGPSLSlPIF 84 (84) T 1yc9_A 43 FDFYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAIYLPLF 84 (84) T ss_dssp CCTSCEEEEEEEEEEEEESGGGTTSTTCEEEEEEEEEECCCC T ss_pred HHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 237134210110365554422224565321002431122211 No 14 >>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic resistance, lipoprotein, palmitate, transmembrane, transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A (A:86-127,A:297-335) Probab=96.81 E-value=0.00038 Score=44.44 Aligned_cols=36 Identities=33% Similarity=0.689 Sum_probs=32.3 Q ss_pred HHHCCCCCCCCCCC---CCCCCCCCCEEEEECCCCCCCC Q ss_conf 21001122221122---3445445410443112234510 Q gi|254780930|r 300 YPSLSLNGSIALTH---DNSFPGYNTHWSFGPKLYLPIF 335 (452) Q Consensus 300 ~P~i~l~~~~~~~~---~~~~~~~~~~~~~g~~l~~Pif 335 (452) ||+|+|+|++|+.. .+++...+..|++|+++++||| T Consensus 43 yP~isLtg~~G~~s~~~~~Lf~~~s~~Wsigp~it~PIF 81 (81) T 3d5k_A 43 FPSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIF 81 (81) T ss_dssp SCEEEEEEEEEEEESSSTTSSSTTCEEEEEEEEEEEEEE T ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCC T ss_conf 026203230365544543112566554201000023200 No 15 >>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} (A:35-77,A:244-294) Probab=84.31 E-value=0.34 Score=25.17 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=28.9 Q ss_pred HHHCCHHHHHHHHCCCCCCCCCCCCCCC-------------CCCCCEEEEECCCCCCCCH Q ss_conf 4301011222210011222211223445-------------4454104431122345101 Q gi|254780930|r 290 AKIGIAKSDLYPSLSLNGSIALTHDNSF-------------PGYNTHWSFGPKLYLPIFD 336 (452) Q Consensus 290 ~~i~~a~a~~~P~i~l~~~~~~~~~~~~-------------~~~~~~~~~g~~l~~Pif~ 336 (452) .++....-+++|+|+|+++-+....... +.....-.+|+++++||+. T Consensus 35 LqLTQTiFDhmPTl~LtASTgvsnt~y~Gs~~~~~~~~~~~ds~~GqN~VGLsfslPLYq 94 (94) T 1ek9_A 35 LQLTQSIFDHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSNXGQNKVGLSFSLPIYQ 94 (94) T ss_dssp EEEEEEEECGSCEEEEEEEEEEECCEEESTTSSSSCCSTTSCCCCEEEEEEEEEEEEEEE T ss_pred EEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCH T ss_conf 999998526189878753114246554555556754445565555433788998641111 No 16 >>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli} (A:21-166) Probab=77.81 E-value=3.5 Score=18.51 Aligned_cols=74 Identities=8% Similarity=0.014 Sum_probs=54.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH Q ss_conf 77788999999999999999987876554323456777653222355798999999856888876877639992 Q gi|254780930|r 168 RHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPA 241 (452) Q Consensus 168 ~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~~~ 241 (452) ..++..+..++..++..+..+...+..++.|..+..++..++..+...+.++..++..+..+...+....=..| T Consensus 43 ~~~~a~l~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~i~AP 116 (146) T 2f1m_A 43 DSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSP 116 (146) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCS T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCEEEC T ss_conf 55432012221113321102478887643364321003334222022310012333122344432100210200 No 17 >>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A* (A:) Probab=57.55 E-value=3.4 Score=18.59 Aligned_cols=13 Identities=15% Similarity=-0.069 Sum_probs=8.7 Q ss_pred CCCHHHHHHHHHH Q ss_conf 9306999999999 Q gi|254780930|r 1 MNILRAIFSLFIV 13 (452) Q Consensus 1 M~~~~~~~~l~~~ 13 (452) |+++|.+++++++ T Consensus 1 M~~~k~~~~~~~~ 13 (396) T 2vx5_A 1 MSEKPAESAAAVA 13 (396) T ss_dssp ------------- T ss_pred CCCCHHHHHHHHH T ss_conf 9966256677776 No 18 >>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae} (A:1-143,A:308-349) Probab=56.01 E-value=4.8 Score=17.64 Aligned_cols=18 Identities=6% Similarity=-0.092 Sum_probs=12.5 Q ss_pred HHHHHHHHHHHHCHHHHH Q ss_conf 799999999970899899 Q gi|254780930|r 60 SLNKLVKIALQQNLTILQ 77 (452) Q Consensus 60 ~L~~~i~~Al~~np~l~~ 77 (452) .++++++.-.+.||+++. T Consensus 58 ~~~~~i~~f~ke~p~IkV 75 (185) T 2w7y_A 58 TXRDLYDKFAEEHKDSGV 75 (185) T ss_dssp HHHHHHHHHHHHC--CCS T ss_pred HHHHHHHHHHHHCCCCEE T ss_conf 999999999998869379 No 19 >>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} (A:30-190) Probab=52.15 E-value=11 Score=15.23 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=50.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 67778899999999999999998787655432345677765322235579899999985688887687763 Q gi|254780930|r 167 ARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLL 237 (452) Q Consensus 167 ~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~ 237 (452) +..++..+.-....+...+.........++.|..+..++..++..+...+..+..++.....+...+..+- T Consensus 49 l~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (161) T 3fpp_A 49 LMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAK 119 (161) T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTT T ss_pred HHHCCCCCCCCCCCHHCCCCCCCCCCCHHCCCCCCHHHHCCCCCHHHHCCCCCCHHHHHCCCCCCCCCCCC T ss_conf 10000112222211000222221012011037541112100010000001121000000000122232110 No 20 >>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic binding protein, ABC transporter, transport protein, ligand; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A (A:1-123,A:293-354) Probab=49.41 E-value=2.2 Score=19.91 Aligned_cols=47 Identities=13% Similarity=-0.061 Sum_probs=27.2 Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC Q ss_conf 79999999997089989999999999999998754205301110112 Q gi|254780930|r 60 SLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISH 106 (452) Q Consensus 60 ~L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~ 106 (452) .+++++..--+.||+++.-.......+..-....++-.|.+-...+. T Consensus 56 ~~~~i~~~Fek~~p~IkV~~~~~~s~~~~~~i~a~g~~pDV~~~~~~ 102 (185) T 3k6v_A 56 PFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADY 102 (185) T ss_dssp HHHHHHHHHHHHSTTCEEEEEEECHHHHHHHHHTSCCCCSEEEESST T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCCCEEEECCH T ss_conf 99999999999884918999968819999999967999878998999 No 21 >>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} (A:) Probab=48.34 E-value=2.3 Score=19.69 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=32.4 Q ss_pred CCCHHHHHHHHHH---HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHHHHH Q ss_conf 9306999999999---9975026899999995647501024677666676862343660998799999999970899899 Q gi|254780930|r 1 MNILRAIFSLFIV---LLAGCTVGPEYTKPHMPLLPTQFSIGNSKNLINIDTLKWWESFNDTSLNKLVKIALQQNLTILQ 77 (452) Q Consensus 1 M~~~~~~~~l~~~---~l~gC~~~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~d~~L~~~i~~Al~~np~l~~ 77 (452) ||.+..+++++++ +|+||+.+..... ......+.+|..-.+..++++++.--+.||+++. T Consensus 1 Mkk~~~~~~~~~~~~~~la~c~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~~~~~F~~~~p~i~V 63 (355) T 3c9h_A 1 MRICLFLCLCLCMASPALAQVAVFPALSG-----------------KTDAQTLVVYSSLDEPLATPMIEGFQKANPDIAV 63 (355) T ss_dssp ---------------CEEEEEEEECCTTC---------------------CEEEEEECSCHHHHHHHHHHHHHHCTTCEE T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCC-----------------CCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEE T ss_conf 93699999999999999999874333356-----------------7779979999698878999999999987899279 Q ss_pred HH Q ss_conf 99 Q gi|254780930|r 78 AT 79 (452) Q Consensus 78 a~ 79 (452) -. T Consensus 64 ~~ 65 (355) T 3c9h_A 64 HY 65 (355) T ss_dssp EE T ss_pred EE T ss_conf 99 No 22 >>3bxw_B Chitinase domain-containing protein 1; TIM barrel, alternative splicing, lysosome, polymorphism, secreted, hydrolase; 2.70A {Homo sapiens} (B:1-71,B:302-358) Probab=36.91 E-value=13 Score=14.80 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=14.0 Q ss_pred CCCHHHHHHHHH-HHHHHHCCCCCC Q ss_conf 930699999999-999750268999 Q gi|254780930|r 1 MNILRAIFSLFI-VLLAGCTVGPEY 24 (452) Q Consensus 1 M~~~~~~~~l~~-~~l~gC~~~p~~ 24 (452) |+++..++++.+ +-++.|++.|.- T Consensus 1 m~~~~~~l~l~~~~~~~~~TLs~~d 25 (128) T 3bxw_B 1 MRTLFNLLWLALACSPVHTTLSKSD 25 (128) T ss_dssp ------------------------- T ss_pred CCCHHHHHHHHHHHHHHHCEECCCC T ss_conf 9327889999999987412756554 No 23 >>3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance, hydrolase; 1.60A {Escherichia coli} (A:) Probab=36.65 E-value=8.9 Score=15.90 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=12.1 Q ss_pred CCCHHHHHHHHHHHHHHHC Q ss_conf 9306999999999997502 Q gi|254780930|r 1 MNILRAIFSLFIVLLAGCT 19 (452) Q Consensus 1 M~~~~~~~~l~~~~l~gC~ 19 (452) ||++|.+++++++++.+|+ T Consensus 1 M~~~~~~~~~~~~~~~~~~ 19 (294) T 3dw0_A 1 MSLYRRLVLLSCLSWPLAG 19 (294) T ss_dssp ------------------- T ss_pred CCHHHHHHHHHHHHHHHHH T ss_conf 9258999999999999874 No 24 >>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} (C:) Probab=26.21 E-value=27 Score=12.71 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=11.1 Q ss_pred HHHHHHHHHHHHHHCCCCC Q ss_conf 9999999999975026899 Q gi|254780930|r 5 RAIFSLFIVLLAGCTVGPE 23 (452) Q Consensus 5 ~~~~~l~~~~l~gC~~~p~ 23 (452) |.++.++.+++.||+..|. T Consensus 3 K~~i~f~~~~i~~~ss~~~ 21 (186) T 2f2f_C 3 KYLLSFLLSMILTLTSHAE 21 (186) T ss_dssp ------------------- T ss_pred HHHHHHHHHHHHHCCCCCC T ss_conf 1169999999986114665 No 25 >>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase; HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A* 2w5x_A* 2iuc_A 2iuc_B (A:1-304,A:338-375) Probab=25.03 E-value=19 Score=13.73 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=14.0 Q ss_pred CCCHHHHHHHHHHHHHHHCC Q ss_conf 93069999999999975026 Q gi|254780930|r 1 MNILRAIFSLFIVLLAGCTV 20 (452) Q Consensus 1 M~~~~~~~~l~~~~l~gC~~ 20 (452) ||+++.+++++++++.+|+. T Consensus 1 M~~~~~~~~~~~~~~~~~~~ 20 (342) T 2w5v_A 1 MKLKKIVFTLIALGLFSCKT 20 (342) T ss_dssp -------------------- T ss_pred CCCHHHHHHHHHHHHHHHHH T ss_conf 97079999999999999764 No 26 >>3e4r_A Nitrate transport protein; ALFA-beta protein, substrate-binding protein domain, alkanesulfonate-binding protein; HET: EPE; 2.01A {Xanthomonas axonopodis PV} (A:1-109,A:208-279) Probab=22.85 E-value=27 Score=12.74 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=9.6 Q ss_pred CCCHHHHHHHHH-HHHHHHC Q ss_conf 930699999999-9997502 Q gi|254780930|r 1 MNILRAIFSLFI-VLLAGCT 19 (452) Q Consensus 1 M~~~~~~~~l~~-~~l~gC~ 19 (452) ||+++.++++++ +++++|. T Consensus 1 Mk~~~~~~~~~~~~~~~~~~ 20 (181) T 3e4r_A 1 MGSSHHHHHHSSGLVPRGSH 20 (181) T ss_dssp -------------------- T ss_pred CCCCCCCCCCHHCCCCCCCC T ss_conf 98654444310003446777 Done!