HHsearch results for GI: 254780930 and protein with PDBid: 1yc9_A
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=99.80 E-value=3.1e-17 Score=129.00 Aligned_cols=181 Identities=15% Similarity=0.119 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCC-------CCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 899730234556555899996430101122221001122221122344-------5445410443112234510124566
Q gi|254780930|r 269 ADLIRNRPDIRYQEKKLADSVAKIGIAKSDLYPSLSLNGSIALTHDNS-------FPGYNTHWSFGPKLYLPIFDKGKIK 341 (452)
Q Consensus 269 ~~~l~~RPdi~~a~~~~~~a~~~i~~a~a~~~P~i~l~~~~~~~~~~~-------~~~~~~~~~~g~~l~~Pif~gg~~~ 341 (452)
..++.|+|||+.++..++++...++.+++.++|+|+++++++...... ..+....+..++++++|||+||++.
T Consensus 40 ~~Al~nnp~l~~a~~~~~~a~~~~~~a~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 119 (442)
T 1yc9_A 40 EEALQHSPSLCMAMARLKGAQGFARQAGAIRSFDLGLAASATESKVSERYQSATPPDGWNDYGTLTLNFQYDFDFWGKNR 119 (442)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHGGGSCEEEEEEEEEEEECCSSSSCSSCCCSEEEEEEEEEEEEEECCTTSHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCH
T ss_conf 99996499999999999999999999637458805677422114566555677888776643212467899861033112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 56779999999999999999999999999999999999999999999999999999999999871883289999999999
Q gi|254780930|r 342 SNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDILDIERAT 421 (452)
Q Consensus 342 a~i~~a~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll~a~~~~ 421 (452)
..++.++...+.+..+++.+..++..+|..+|..+..+.+.+...++.++.+++.++.++.+|+.|..+..|++.++..+
T Consensus 120 ~~~~~a~~~~~~a~~~~~~~~~~l~~~v~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~d~~~a~~~l 199 (442)
T 1yc9_A 120 AAVVAATSELAAAEAESVAARLMISTSIANAYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVA 199 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999965751176899999875
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999999999984999
Q gi|254780930|r 422 AKVEVDLSIAKRQLAKSYVDLYIAIGSG 449 (452)
Q Consensus 422 ~~a~~~~~~a~~~~~~a~~~L~~AlGGg 449 (452)
.+++..+.+++.++..+...|...+|..
T Consensus 200 ~~~~~~l~~~~~~~~~a~~~L~~llg~~ 227 (442)
T 1yc9_A 200 ASVEAELLGIQESIQLQKNALAALVGQG 227 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 1126999999999999999999984768