HHSEARCH alignment of GI: 254780930 and SCOP domain: d1ek9a_

Alignment
>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux pump component {Escherichia coli [TaxId: 562]}
Probab=99.81  E-value=7.9e-18  Score=131.31  Aligned_cols=183  Identities=17%  Similarity=0.195  Sum_probs=158.5

Q ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCC------------------CCCCCCCCCC
Q ss_conf             7999999999708998999999999999999875420530111011245665------------------5544444321
Q gi|254780930|r   60 SLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPN------------------LKTNSTGQLD  121 (452)
Q Consensus        60 ~L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a~a~~~P~~~~~~~~~~~~~------------------~~~~~~~~~~  121 (452)
                      .+++++..++.++|+++.+..+++.++..+..+++.++|++++.+++++...                  .......+++
T Consensus       208 ~~~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~  287 (428)
T d1ek9a_         208 PVNALLKEAEKRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLS  287 (428)
T ss_dssp             CHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHGGGSCEEEEEEEEEEECCEEESTTSSSSCCSTTSCCCCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             13456677664114553477789999999999997129952002000212322467655554322356655554389999


Q ss_pred             CCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             110110012345-7788887776555679999999999999876666777889999999999999999878765543234
Q gi|254780930|r  122 SDWKIDLFGQRR-HIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGAT  200 (452)
Q Consensus       122 ~s~~ldl~G~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~  200 (452)
                      ++|++..+|+.+ .++.++...+.++.+++..+.++..++..+|.++....+.+...++.++..++.++..+.+|+.|.+
T Consensus       288 ~~~plf~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~y~~G~~  367 (428)
T d1ek9a_         288 FSLPIYQGGMVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTR  367 (428)
T ss_dssp             EEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             98740277767777666789999999999888878999999999999999999999999999999999999999977997


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             567776532223557989999998568888768776399921
Q gi|254780930|r  201 SKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPAT  242 (452)
Q Consensus       201 ~~~d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~~~~  242 (452)
                      +..|++.++..+.+++..+..++.++..+...|...+|.-..
T Consensus       368 s~~dll~a~~~~~~a~~~~~~a~~~~~~a~~~L~~~~G~L~~  409 (428)
T d1ek9a_         368 TIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNE  409 (428)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             299999999999999999999999999999999998589998


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Outer membrane efflux proteins (OEP)
superfamily: Outer membrane efflux proteins (OEP)
family: Outer membrane efflux proteins (OEP)
domain: Integral outer membrane protein TolC, efflux pump component
species: Escherichia coli [TaxId: 562]