HHSEARCH alignment of GI: 254780930 and SCOP domain: d1wp1a_

Alignment
>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas aeruginosa [TaxId: 287]}
Probab=100.00  E-value=0  Score=454.75  Aligned_cols=430  Identities=22%  Similarity=0.384  Sum_probs=374.9

Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02689999999564750102467-----7666676862343660998799999999970899899999999999999987
Q gi|254780930|r   18 CTVGPEYTKPHMPLLPTQFSIGN-----SKNLINIDTLKWWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSV   92 (452)
Q Consensus        18 C~~~p~~~~p~~~~~~~~~~~~~-----~~~~~~~~~~~ww~~~~d~~L~~~i~~Al~~np~l~~a~~~i~~a~~~~~~a   92 (452)
                      |++.|++.+|..|+.+.......     ..+..++...+||..|+||||+++|++|++|||+|++++.+++++++++..+
T Consensus         1 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~d~tL~~~i~~Al~nnp~l~~a~~~~~~a~~~~~~a   80 (456)
T d1wp1a_           1 CSLIPDYQRPEAPVAAAYPQGQAYGQNTGAAAVPAADIGWREFFRDPQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQ   80 (456)
T ss_dssp             CCCCCCCCCCCCCSCSSCCCSTTCCCCCCSCSSCGGGSCHHHHBCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999979998765666655455677656765652599865988899999999970999999999999999999997


Q ss_pred             HHHHCCCHHHCCCCCCCCCCCC---------CC---CCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5420530111011245665554---------44---443211101100123457-7888877765556799999999999
Q gi|254780930|r   93 RADLFPSSYASISHRFIPNLKT---------NS---TGQLDSDWKIDLFGQRRH-IESSLANLDSAYAQVDIAKLNVISK  159 (452)
Q Consensus        93 ~a~~~P~~~~~~~~~~~~~~~~---------~~---~~~~~~s~~ldl~G~~~~-~~~a~~~~~~~~~~~~~~~~~l~~~  159 (452)
                      ++.++|++++++++.+......         ..   .......|.+++||++.. ++.+....+.++..+..++.+++.+
T Consensus        81 ~a~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~  160 (456)
T d1wp1a_          81 RADLFPRIGVDGSGTRQRLPGDLSTTGSPAISSQYGVTLGTTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVAS  160 (456)
T ss_dssp             HHTTSCCCBCCCBCCCCBCCTTTSSSSSCCBCCCEEEECBEEEEECCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             42408805786223320366655678887766432112220112334335677788888888888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99876666777889999999999999999878765543234567776532223557989999998568888768776399
Q gi|254780930|r  160 LIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGY  239 (452)
Q Consensus       160 v~~aY~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~~~~~~~~l~~~~~~~~~a~~~L~~l~G~  239 (452)
                      |.++||+++.+++.+++.++.++.+++.++.++.+++.|.++..|+.+++.++...+..+..++.++..++..|..++|.
T Consensus       161 v~~aY~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~l~~~~~~l~~~~~~~~~a~~~L~~llg~  240 (456)
T d1wp1a_         161 VATAYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLGS  240 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999998777899999999999999999888637852010004788999999889999999999999999998289


Q ss_pred             CHHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCC---C
Q ss_conf             9213000123455443310012210488789973023455655589999643010112222100112222112234---4
Q gi|254780930|r  240 PATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSDLYPSLSLNGSIALTHDN---S  316 (452)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~RPdi~~a~~~~~~a~~~i~~a~a~~~P~i~l~~~~~~~~~~---~  316 (452)
                      ++............    ....+.+..+...++.+||||++++..+++++..++.+++.++|+|++++++++...+   .
T Consensus       241 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~pdl~~~~~~~~~a~~~~~~a~~~~~P~l~l~~~~~~~~~~~~~~  316 (456)
T d1wp1a_         241 GIPANLPQGLGLDQ----TLLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGAARAAFFPSISLTANAGTMSRQLSGL  316 (456)
T ss_dssp             CCCSSCCCCCCTTS----CCBCCCCCCCTTHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCEEEESSGGGT
T ss_pred             CCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             97532100124211----36877854679999985100267899999889999999975301321000034454456644


Q ss_pred             CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             54454104431122345101245665677999999999999999999999999999999999999999999999999999
Q gi|254780930|r  317 FPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKS  396 (452)
Q Consensus       317 ~~~~~~~~~~g~~l~~Pif~gg~~~a~i~~a~~~~~~a~~~~~~~~~~a~~ev~~a~~~~~~~~~~~~~~~~~~~~a~~~  396 (452)
                      +......|.+|++++||||+||+++++++.++++.+++..+++++.+++..+|++++.++..+.+++...++.++.+++.
T Consensus       317 ~~~~~~~~~~g~~~~~pl~~g~~~~~~~~~a~~~~~~a~~~~~~~~~~i~~~v~~~~~~~~~~~~~l~~~~~~~~~a~~~  396 (456)
T d1wp1a_         317 FDAGSGSWLFQPSINLPIFTAGSLRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEY  396 (456)
T ss_dssp             TSTTCEECCEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             45665432213011232000000111256899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9999999871883289999999999999999999999999999999998499999
Q gi|254780930|r  397 MSLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYN  451 (452)
Q Consensus       397 ~~~~~~~y~~G~~~~~dll~a~~~~~~a~~~~~~a~~~~~~a~~~L~~AlGGg~~  451 (452)
                      ++..+.+|+.|.++++||+++++++++++.+++++++++..+.++|++|+||||+
T Consensus       397 ~~~~~~~y~~G~~s~~dll~a~~~l~~a~~~~~~a~~~~~~a~~~L~~alGg~~~  451 (456)
T d1wp1a_         397 YQLADKRYRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGGWN  451 (456)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999999987996199999999999999999999999999999999998379998


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Outer membrane efflux proteins (OEP)
superfamily: Outer membrane efflux proteins (OEP)
family: Outer membrane efflux proteins (OEP)
domain: Outer membrane protein OprM
species: Pseudomonas aeruginosa [TaxId: 287]