>gnl|CDD|162557 TIGR01845, outer_NodT, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. Length = 454

Score = 312 bits (802), Expect = 9e-86 Identities = 139/457 (30%), Positives = 238/457 (52%), Gaps = 25/457 (5%) Query: 15 LAGCTVGPEYTKPHMPL----LPTQFSIGNSKNLINIDT--LKWWESFNDTSLNKLVKIA 68 L+GC VGP+Y +P PL L + + G L + WW +F D LN L++ A Sbjct: 1 LSGCAVGPDYARPETPLAAGYLESDPTFGGQGRLSAGVWPAVDWWTAFGDPQLNALIEEA 60 Query: 69 LQQNLTILQATERINAAKENILSVRADLFPSSYASISH------------RFIPNLKTNS 116 L N + A R+ AA+ N+ + RAD FPS S S +L S Sbjct: 61 LADNPDLQVAEARLRAARANLRAARADFFPSLGLSASATRQKSSEDASGTTSGGSLSNTS 120 Query: 117 TGQLDSDWKIDLFG-QRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERIS 175 T LD +++DLFG RR +ES+LA L++A A A+L + + + +Y+ + ++ Sbjct: 121 TLTLDVSYELDLFGKVRRAVESALAQLEAAEADSQAARLTLSASIANAYVQLAALRAQLD 180 Query: 176 IAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNIST 235 + H L +K +EL+ ++ G + + + EA + S E+++P+L+ + ++ Sbjct: 181 VYHAALASRRKTLELTQKRYAAGVAAASDVRQAEAAVASAEAELPSLDVQIAQARNALAA 240 Query: 236 LLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIA 295 LLG + L + + Q +P+ +P+DL+R RPDIR E++LA + A+IG+A Sbjct: 241 LLGKGPSRGLA-IARPLLLDQLPPDLPL--SLPSDLLRRRPDIRAAERRLAAANAQIGVA 297 Query: 296 KSDLYPSLSLNGSI---ALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQ 352 K+ +PS++L+ SI A F G + WS GP L LPIFD G +++ + A+++ Sbjct: 298 KAAFFPSITLSASIGLSASQLSRLFDGGSRFWSIGPALALPIFDGGSLRAALDSAKATYD 357 Query: 353 EQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLL 412 +++TVL A +EV +AL ++ + + + AVE ++++SL+ YR G S L Sbjct: 358 AAVAQYRQTVLTAFQEVADALVALQALARRLDAQRQAVEQAQEALSLAQTRYRAGLDSYL 417 Query: 413 DILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSG 449 +L+ +R+ + L+ + + V LY A+G G Sbjct: 418 TVLEAQRSLLTAQRSLATLQARRLSDSVALYKALGGG 454

RPSBLAST alignment for GI: 254780930 and conserved domain: TIGR01845