RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780930|ref|YP_003065343.1| nodulation protein (outer
membrane efflux protein) [Candidatus Liberibacter asiaticus str.
psy62]
(452 letters)
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein;
HET: BOG; 1.80A {Vibrio cholerae} (A:1-69,A:115-283)
Length = 238
Score = 111 bits (279), Expect = 1e-25
Identities = 41/249 (16%), Positives = 97/249 (38%), Gaps = 37/249 (14%)
Query: 52 WWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPN 111
WW+ + D LN L++ ALQ + ++ A R+ A+ A
Sbjct: 26 WWQRYQDAQLNHLIEEALQHSPSLCMAMARLKGAQGFARQAGA----------------- 68
Query: 112 LKTNSTGQLDSDWKIDLFGQRRH-IESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHF 170
++G+ R + ++ + L +A A+ A+L + + + +Y +
Sbjct: 69 ----------------IWGKNRAAVVAATSELAAAEAESVAARLMISTSIANAYAELARL 112
Query: 171 KERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNV 230
H L + K +EL ++ G + S+ + +A S+E+++ +++S ++
Sbjct: 113 YANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGIQESIQLQK 172
Query: 231 HNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVA 290
+ ++ L+G + + + L+ +R DI + +
Sbjct: 173 NALAALVGQGPDRAA---SIEEPHITLTSRYGLPSEAGVGLLGHRADITAARWRAEAAAQ 229
Query: 291 KIGIAKSDL 299
++GIA++
Sbjct: 230 QVGIAQAQF 238
>3d5k_A OPRM, outer membrane protein OPRM; channel,
beta-alpha-barrel, antibiotic resistance, lipoprotein,
palmitate, transmembrane, transport; 2.40A {Pseudomonas
aeruginosa} PDB: 1wp1_A (A:44-85,A:128-296)
Length = 211
Score = 106 bits (266), Expect = 5e-24
Identities = 49/245 (20%), Positives = 96/245 (39%), Gaps = 35/245 (14%)
Query: 56 FNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISHRFIPNLKTN 115
F D L +L+ +AL+ N + A + A + RADLF
Sbjct: 1 FRDPQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQRADLF------------------ 42
Query: 116 STGQLDSDWKIDLFGQRRH-IESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERI 174
LFG+ R + +L + A+ +++ + +Y+ + + ++
Sbjct: 43 ------------LFGRLRSLRDQALEQYLATEQAQRSAQTTLVASVATAYLTLKADQAQL 90
Query: 175 SIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNIS 234
+ L Y+K+ +L+ + G S L L + + ++ + + + + + +
Sbjct: 91 QLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALV 150
Query: 235 TLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGI 294
LLG L Q L + G+P+DL++ RPDI E +L + A IG
Sbjct: 151 LLLGSGIPANL----PQGLGLDQTLLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGA 206
Query: 295 AKSDL 299
A++
Sbjct: 207 ARAAF 211
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein;
HET: BOG; 1.80A {Vibrio cholerae} (A:323-442)
Length = 120
Score = 85.7 bits (212), Expect = 1e-17
Identities = 24/115 (20%), Positives = 56/115 (48%)
Query: 338 GKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSM 397
G+++ + AE+ QE + T++ A+ E+ + +TS + + K + AV+ ++++
Sbjct: 3 GRLEGQLTSAEARYQEAVAQYNGTLVQALHEIADVVTSSQALQARINKTEQAVQQAEQAL 62
Query: 398 SLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452
++ Y+ G + LD+L E + + L + + + L A+G G+
Sbjct: 63 HIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFET 117
>1ek9_A Outer membrane protein TOLC; integral membrane protein,
alpha helical barrel, beta barrel; 2.10A {Escherichia
coli} (A:203-243,A:295-406)
Length = 153
Score = 80.1 bits (197), Expect = 5e-16
Identities = 18/111 (16%), Positives = 49/111 (44%)
Query: 338 GKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSM 397
G + S +++A+ + + + ++ V ++ +IN + + AV + S+
Sbjct: 43 GXVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSL 102
Query: 398 SLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGS 448
Y G +++D+LD + +L+ A+ + +++ A+G+
Sbjct: 103 DAXEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALGT 153
>3d5k_A OPRM, outer membrane protein OPRM; channel,
beta-alpha-barrel, antibiotic resistance, lipoprotein,
palmitate, transmembrane, transport; 2.40A {Pseudomonas
aeruginosa} PDB: 1wp1_A (A:336-449)
Length = 114
Score = 80.0 bits (197), Expect = 5e-16
Identities = 23/112 (20%), Positives = 50/112 (44%)
Query: 338 GKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSM 397
G +++++ A+ +++ + A +EV + L + + + + V+ +
Sbjct: 3 GSLRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYY 62
Query: 398 SLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSG 449
L+ YR G + L +LD +R+ + L + S V+LY A+G G
Sbjct: 63 QLADKRYRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGG 114
>1ek9_A Outer membrane protein TOLC; integral membrane protein,
alpha helical barrel, beta barrel; 2.10A {Escherichia
coli} (A:1-34,A:78-202,A:407-428)
Length = 181
Score = 68.8 bits (167), Expect = 1e-12
Identities = 13/145 (8%), Positives = 40/145 (27%), Gaps = 2/145 (1%)
Query: 132 RRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAHQILDLYKKNIELS 191
R + + +I +Y + + + +S + + ++ +
Sbjct: 38 WRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQT 97
Query: 192 HLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQ 251
+F G + + A+ ++ ++ T + V + + G E
Sbjct: 98 TQRFNVGLVAITDVQNARAQYDTVLANELTARNNLDNAVEQLRQITGNYYPE--LAALNV 155
Query: 252 SNNFQPNLYIPINIGIPADLIRNRP 276
N + + + P
Sbjct: 156 ENFKLNEQDLLALNNALSKPVSTNP 180
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein;
HET: BOG; 1.80A {Vibrio cholerae} (A:70-114,A:284-322)
Length = 84
Score = 42.9 bits (101), Expect = 8e-05
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 263 INIGIPADLIRNRPDIRYQEKKLADSVAKIGIAK------SDLYPSLSLNGSI---ALTH 313
++G+ A ++ RYQ D G D YP ++L+ I A
Sbjct: 3 FDLGLAASATESKVSERYQSATPPDGWNDYGTLTLNFQYDFDFYPDVTLSAFIGYQAFGL 62
Query: 314 DNSFPGYNTHWSFGPKLYLPIF 335
D+ F N + GP +YLP+F
Sbjct: 63 DHLFDSGNDAGAIGPAIYLPLF 84
>3d5k_A OPRM, outer membrane protein OPRM; channel,
beta-alpha-barrel, antibiotic resistance, lipoprotein,
palmitate, transmembrane, transport; 2.40A {Pseudomonas
aeruginosa} PDB: 1wp1_A (A:86-127,A:297-335)
Length = 81
Score = 39.2 bits (92), Expect = 0.001
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 290 AKIGIAKSDL-YPSLSLNGSI---ALTHDNSFPGYNTHWSFGPKLYLPIF 335
+G +L +PS+SL + + F + W F P + LPIF
Sbjct: 32 VTLGTTAWELDFPSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIF 81
>1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A
{Vibrio cholerae} (A:1-215)
Length = 215
Score = 32.2 bits (73), Expect = 0.16
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 101 YASISHRFIPNLKTNSTGQLDSDWKIDLFGQRRHIESSLANLDSAYAQVDIAKLNVISKL 160
YA+ + R +P + +S+G L ++ GQ + + Y + ++ L +
Sbjct: 112 YANGTQRVLPIISLDSSGNL----VVEFEGQTGRTVLATGTAATEYHKFELVFLPGSNPS 167
Query: 161 IPSYID 166
Y D
Sbjct: 168 ASFYFD 173
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P;
3.00A {Bacillus caldolyticus} (A:9-69)
Length = 61
Score = 28.9 bits (65), Expect = 1.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 224 KSFRMNVHNISTLLGYPATEFLHYMQKQ 251
K FR V ++TL+ + T L + +
Sbjct: 19 KEFRELVDEVATLMAFEITRDLPLEEVE 46
>1wd5_A Hypothetical protein TT1426; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; HET: MES; 2.00A {Thermus thermophilus} (A:)
Length = 208
Score = 28.7 bits (63), Expect = 1.6
Identities = 3/25 (12%), Positives = 7/25 (28%)
Query: 221 TLEKSFRMNVHNISTLLGYPATEFL 245
LE + + ++ L
Sbjct: 21 GLEAPVVLGLPRGGVVVADEVARRL 45
>1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A
{Vibrio cholerae} (A:353-541)
Length = 189
Score = 27.6 bits (61), Expect = 3.8
Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 101 YASISHRFIPNLKTNSTGQLDSDWKIDLFGQRRHIESSLANLD-SAYAQVDIAKLNVISK 159
A S +++ L + +G L +L G I + ++ ++ + ++
Sbjct: 46 VADGSRKYVVTLSIDESGGL----VANLNGVSAPIILQSEHAKVHSFHDYELQ-YSALNH 100
Query: 160 LIPSYID 166
++D
Sbjct: 101 TTTLFVD 107
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 27.2 bits (60), Expect = 4.1
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 16/80 (20%)
Query: 277 DIRYQEKKLADSVAKIGIAKSDLYPSLS-LNGSIALTHDNSFPGYNTHWSFGPKLYLPIF 335
+++Y++++L A+I K + L L + +
Sbjct: 25 NMKYRKRQLVTREAQI---KDWVENELEALKLEAEEIPSEDQNEFLLERT---------- 71
Query: 336 DKGKIKSNIRRAESSAQEQY 355
+I + +AQ+Q+
Sbjct: 72 --REIHNEAESQLRAAQQQW 89
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.317 0.133 0.376
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,132,074
Number of extensions: 132988
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 20
Length of query: 452
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 361
Effective length of database: 1,879,794
Effective search space: 678605634
Effective search space used: 678605634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)