RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780930|ref|YP_003065343.1| nodulation protein (outer
membrane efflux protein) [Candidatus Liberibacter asiaticus str.
psy62]
         (452 letters)



>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel,
           antibiotic resistance, lipoprotein, palmitate,
           transmembrane, transport; 2.40A {Pseudomonas aeruginosa}
           PDB: 1wp1_A
          Length = 474

 Score =  182 bits (461), Expect = 2e-46
 Identities = 96/457 (21%), Positives = 190/457 (41%), Gaps = 27/457 (5%)

Query: 18  CTVGPEYTKPHMPLLPTQFSIG------NSKNLINIDTLKWWESFNDTSLNKLVKIALQQ 71
           C++ P+Y +P  P+    +  G           +    + W E F D  L +L+ +AL+ 
Sbjct: 1   CSLIPDYQRPEAPV-AAAYPQGQAYGQNTGAAAVPAADIGWREFFRDPQLQQLIGVALEN 59

Query: 72  NLTILQATERINAAKENILSVRADLFPSSYASISH---RFIPNLKTNSTGQLDSDWKIDL 128
           N  +  A   + A +      RADLFP      S    R   +L T  +  + S + + L
Sbjct: 60  NRDLRVAALNVEAFRAQYRIQRADLFPRIGVDGSGTRQRLPGDLSTTGSPAISSQYGVTL 119

Query: 129 ----------FGQRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAH 178
                        R   + +L    +       A+  +++ +  +Y+  +  + ++ +  
Sbjct: 120 GTTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVASVATAYLTLKADQAQLQLTK 179

Query: 179 QILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLG 238
             L  Y+K+ +L+   +  G  S L L + +  ++   + +    +    + + +  LLG
Sbjct: 180 DTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLG 239

Query: 239 YPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSD 298
                 L                 +  G+P+DL++ RPDI   E +L  + A IG A++ 
Sbjct: 240 SGIPANLPQGLGLDQTLLT----EVPAGLPSDLLQRRPDILEAEHQLMAANASIGAARAA 295

Query: 299 LYPSLSLN---GSIALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQY 355
            +PS+SL    G+++      F   +  W F P + LPIF  G +++++  A+       
Sbjct: 296 FFPSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIFTAGSLRASLDYAKIQKDINV 355

Query: 356 ITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDIL 415
             +++ +  A +EV + L +     + +   +  V+   +   L+   YR G  + L +L
Sbjct: 356 AQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLADKRYRTGVDNYLTLL 415

Query: 416 DIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452
           D +R+    +  L   +     S V+LY A+G G+N 
Sbjct: 416 DAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGGWNQ 452


>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha
           helical barrel, beta barrel; 2.10A {Escherichia coli}
           SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A
          Length = 428

 Score =  177 bits (448), Expect = 6e-45
 Identities = 53/408 (12%), Positives = 136/408 (33%), Gaps = 24/408 (5%)

Query: 60  SLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPS-------SYASISHRFIPNL 112
           +L ++ + A   N  + ++    +AA E I   R+ L P        +Y++         
Sbjct: 2   NLMQVYQQARLSNPELRKSAADRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGIN 61

Query: 113 KTNSTGQLDSDWKIDLFGQRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKE 172
              ++  L     I    + R +                 +  +I     +Y +  +  +
Sbjct: 62  SNATSASLQLTQSIFDMSKWRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAID 121

Query: 173 RISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHN 232
            +S      +   + ++ +  +F  G  +   +    A+  ++ ++  T   +    V  
Sbjct: 122 VLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANELTARNNLDNAVEQ 181

Query: 233 ISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKI 292
           +  + G    E      +     +P         +  +  +    +         +  +I
Sbjct: 182 LRQITGNYYPELAALNVENFKTDKP----QPVNALLKEAEKRNLSLLQARLSQDLAREQI 237

Query: 293 GIAKSDLYPSLSLNGSIALTHDNS-------------FPGYNTHWSFGPKLYLPIFDKGK 339
             A+    P+L L  S  ++  +                        G    LPI+  G 
Sbjct: 238 RQAQDGHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGM 297

Query: 340 IKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSL 399
           + S +++A+ +        +    + ++ V ++  +IN     +   + AV   + S+  
Sbjct: 298 VNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDA 357

Query: 400 SMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIG 447
               Y  G  +++D+LD        + +L+ A+     + +++  A+G
Sbjct: 358 MEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALG 405


>1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET:
           BOG; 1.80A {Vibrio cholerae}
          Length = 442

 Score =  148 bits (374), Expect = 2e-36
 Identities = 82/417 (19%), Positives = 179/417 (42%), Gaps = 19/417 (4%)

Query: 52  WWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISH----- 106
           WW+ + D  LN L++ ALQ + ++  A  R+  A+       A        + S      
Sbjct: 26  WWQRYQDAQLNHLIEEALQHSPSLCMAMARLKGAQGFARQAGAIRSFDLGLAASATESKV 85

Query: 107 -------RFIPNLKTNSTGQLDSDWKIDLFGQR-RHIESSLANLDSAYAQVDIAKLNVIS 158
                            T  L+  +  D +G+    + ++ + L +A A+   A+L + +
Sbjct: 86  SERYQSATPPDGWNDYGTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLMIST 145

Query: 159 KLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESD 218
            +  +Y +           H  L +  K +EL   ++  G  +  S+ + +A   S+E++
Sbjct: 146 SIANAYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAE 205

Query: 219 IPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDI 278
           +  +++S ++  + ++ L+G            +  +        +       L+ +R DI
Sbjct: 206 LLGIQESIQLQKNALAALVGQGPDRAA---SIEEPHITLTSRYGLPSEAGVGLLGHRADI 262

Query: 279 RYQEKKLADSVAKIGIAKSDLYPSLSLN---GSIALTHDNSFPGYNTHWSFGPKLYLPIF 335
                +   +  ++GIA++  YP ++L+   G  A   D+ F   N   + GP +YLP+F
Sbjct: 263 TAARWRAEAAAQQVGIAQAQFYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAIYLPLF 322

Query: 336 DKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKK 395
             G+++  +  AE+  QE    +  T++ A+ E+ + +TS    +  + K + AV+  ++
Sbjct: 323 TGGRLEGQLTSAEARYQEAVAQYNGTLVQALHEIADVVTSSQALQARINKTEQAVQQAEQ 382

Query: 396 SMSLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452
           ++ ++   Y+ G  + LD+L  E +    +  L   + +     + L  A+G G+  
Sbjct: 383 ALHIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFET 439


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 59/310 (19%), Positives = 96/310 (30%), Gaps = 139/310 (44%)

Query: 13  VLLAGCTVGPEYTKPHMPLLPTQFS--IGNSKNLIN---I---DTLKWWESFNDTSLNKL 64
           +L  G T G E        L +      G+S+ L+    I   D+   WESF  +   K 
Sbjct: 255 LL--GFTPG-E--------LRSYLKGATGHSQGLVTAVAIAETDS---WESFFVSVR-KA 299

Query: 65  VKIAL-------QQ-----NL--TILQATERINAAKEN-------ILSVRADLFPSSYAS 103
           + + L        +     +L  +IL+ +       EN       +LS+  +L   +   
Sbjct: 300 ITV-LFFIGVRCYEAYPNTSLPPSILEDSL------ENNEGVPSPMLSIS-NL---TQEQ 348

Query: 104 ISHRFIPNLKTNSTGQLDSDWKIDLFGQRRHIESSLAN----------LDSAYAQVDIAK 153
           +   ++   KTNS   L +          + +E SL N            S Y       
Sbjct: 349 V-QDYVN--KTNS--HLPAG---------KQVEISLVNGAKNLVVSGPPQSLYG------ 388

Query: 154 LNVISKLI--PSYID-AR-HFKER-ISIAHQIL--------------------DLYKKNI 188
           LN+  +    PS +D +R  F ER +  +++ L                    DL K N+
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448

Query: 189 EL--SHLKF----TQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTL------ 236
                 ++     T        L  L   I         +          I  L      
Sbjct: 449 SFNAKDIQIPVYDTF--DGS-DLRVLSGSI------SERI---VDC----IIRLPVKWET 492

Query: 237 -LGYPATEFL 245
              + AT  L
Sbjct: 493 TTQFKATHIL 502



 Score = 57.6 bits (139), Expect = 5e-09
 Identities = 88/511 (17%), Positives = 151/511 (29%), Gaps = 185/511 (36%)

Query: 59  TSLNKLVKIALQQNLTILQAT--ERINAAKENILSVRADLFPSSYASISHRFIPNLKTNS 116
             L  LV  A     + LQ    + +    E   +   D  P++ A +  +F+       
Sbjct: 18  HVL--LVPTASFFIASQLQEQFNKILPEPTEGFAA---DDEPTTPAELVGKFL------- 65

Query: 117 TGQLDSDWKIDLFGQRRHI-ESSLANLDSAY-AQVDI----AKLNVIS--------KLIP 162
            G + S  +    GQ   +    L   ++ Y    DI    AKL   +        +LI 
Sbjct: 66  -GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124

Query: 163 SYIDARHF-KERISIAHQILDLYK----KNIELSHLKFT----QGATSK----L------ 203
           +YI AR   K           L++     N +L          QG T      L      
Sbjct: 125 NYITARIMAKRPFDKKSNSA-LFRAVGEGNAQL----VAIFGGQGNTDDYFEELRDLYQT 179

Query: 204 ------SLVKLEAE-IKSIESDIPTLEKSFR--MNVHN-ISTLLGYPATEFLHYMQKQSN 253
                  L+K  AE +  +       EK F   +N+   +      P  ++L        
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-------- 231

Query: 254 NFQPNLYIPIN---IGI----------------PADLIRNRPDIRYQEKKLADS------ 288
                L IPI+   IG+                P +L R+          L  +      
Sbjct: 232 -----LSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL-RSY---------LKGATGHSQG 276

Query: 289 -VAKIGIAKSDLYPSLSLNGSIALTHDNS--------FPGYNTHWSFGPKLYLPIFDKGK 339
            V  + IA++D + S            +         F G   + ++ P   LP      
Sbjct: 277 LVTAVAIAETDSWESF---------FVSVRKAITVLFFIGVRCYEAY-PNTSLP------ 320

Query: 340 IKSNIRRAESSAQEQYITWQETVLNA-IKEVENALTSIN----EDKKIVTKL----QHAV 390
              +I        E   +   ++ N   ++V++ +   N      K++   L    ++ V
Sbjct: 321 --PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378

Query: 391 ------ELH---------KKSMSL--SMINYRQGR-----YSLLDI--------LDIERA 420
                  L+         K    L  S I + + R        L +        L    A
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE-RKLKFSNRFLPVASPFHSHLL--VPA 435

Query: 421 TAKVEVDLSIAKRQLAKSYVDLYIAIGSGYN 451
           +  +  DL            D+ I +   Y+
Sbjct: 436 SDLINKDLVKNNVSFNAK--DIQIPV---YD 461



 Score = 35.7 bits (82), Expect = 0.021
 Identities = 68/277 (24%), Positives = 107/277 (38%), Gaps = 80/277 (28%)

Query: 169  HFKERISIAHQILDLYKKN-IELS-HLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSF 226
            HFK+  +    ILD+   N + L+ H    +G   + +   +  E   ++  + T EK F
Sbjct: 1652 HFKD--TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE-TIVDGKLKT-EKIF 1707

Query: 227  R-MNVHNIS-------TLLGYPATEF----LHYMQKQSNNFQPNLYIPINIG-IPADLIR 273
            + +N H+ S        LL   AT+F    L  M+K +  F+ +L    + G IPAD   
Sbjct: 1708 KEINEHSTSYTFRSEKGLLS--ATQFTQPALTLMEKAA--FE-DLK---SKGLIPADATF 1759

Query: 274  NRPDI-RYQE-KKLADSVAKIGIAKSDLYPSLSLNGSIALTHDNSFPGYNTHWSFGPKLY 331
                +  Y     LAD ++   + +   Y  +++   +A+  D            G   Y
Sbjct: 1760 AGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ--VAVPRD----------ELGRSNY 1807

Query: 332  LPIFDKGKIKSNIRR-AESSAQE--QYIT--------W-----------QETV----LNA 365
                  G I  N  R A S +QE  QY+         W           Q+ V    L A
Sbjct: 1808 ------GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA 1861

Query: 366  IKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMI 402
            +  V N L  I   K  + +LQ       KS+SL  +
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQ-------KSLSLEEV 1891



 Score = 33.0 bits (75), Expect = 0.13
 Identities = 30/159 (18%), Positives = 66/159 (41%), Gaps = 23/159 (14%)

Query: 17   GCTVGPEYTKPHMPLL-PTQFSIGNSKNLINID------TLKWWE---SFNDT-SLNKLV 65
            G     ++T+P + L+    F    SK LI  D      +L  +    S  D  S+  LV
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV 1783

Query: 66   KIALQQNLTILQATERINAAKEN--ILSVRADLFPSSYASISHRFIPNLKTNSTGQLDSD 123
            ++   + +T+  A  R    + N  ++++      +S++  + +++       TG     
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG----- 1838

Query: 124  WKIDLFG----QRRHIES-SLANLDSAYAQVDIAKLNVI 157
            W +++       ++++ +  L  LD+    ++  KL  I
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877



 Score = 31.8 bits (72), Expect = 0.36
 Identities = 30/167 (17%), Positives = 44/167 (26%), Gaps = 59/167 (35%)

Query: 302 SLSLN-GSIA---LTHDNSFPGYNTHW-SFGPKLYLP---IFDKGKIKSNI--------- 344
            L+L+ GS+    L    SF   +     F   L  P        +  +           
Sbjct: 8   PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67

Query: 345 --RRAESSAQEQYITWQETVLNAI-KEVENALTSINEDKKIVTKLQHAVELHKKSMSLSM 401
                E S   Q+    + VLN    E EN     N+   I     HA+           
Sbjct: 68  VSSLVEPSKVGQF----DQVLNLCLTEFENCYLEGND---I-----HAL-AA-------- 106

Query: 402 INYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGS 448
                    LL   D                ++L K+Y+   I    
Sbjct: 107 --------KLLQENDTTLV----------KTKELIKNYITARIMAKR 135


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 7/29 (24%)

Query: 202 KLSLVKLEAEIKSIESD-IP------TLE 223
           K +L KL+A +K    D  P      T+E
Sbjct: 19  KQALKKLQASLKLYADDSAPALAIKATME 47



 Score = 29.6 bits (65), Expect = 1.5
 Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 9/34 (26%)

Query: 66 KIALQQNLTILQATERI---NAAKENILSVRADL 96
          K AL++    LQA+ ++   ++A    L+++A +
Sbjct: 19 KQALKK----LQASLKLYADDSAPA--LAIKATM 46



 Score = 29.2 bits (64), Expect = 1.7
 Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 10/29 (34%)

Query: 379 DKKIVTKLQHAVELH----------KKSM 397
           +K+ + KLQ +++L+          K +M
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAIKATM 46



 Score = 29.2 bits (64), Expect = 2.1
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 13/32 (40%)

Query: 283 KKLADSVAKIGIAKSDLY-----PSLSLNGSI 309
           KKL  S+      K  LY     P+L++  ++
Sbjct: 23  KKLQASL------K--LYADDSAPALAIKATM 46



 Score = 27.3 bits (59), Expect = 7.0
 Identities = 6/15 (40%), Positives = 8/15 (53%)

Query: 305 LNGSIALTHDNSFPG 319
           L  S+ L  D+S P 
Sbjct: 25  LQASLKLYADDSAPA 39


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 31.3 bits (70), Expect = 0.40
 Identities = 56/243 (23%), Positives = 95/243 (39%), Gaps = 82/243 (33%)

Query: 2   NILRAIFSLFIVLLAGCTV------GPEYTKPH---MPLLPTQFSIGN----SKNLINID 48
           NILR         + GC        G E T+P    +P+ P   + G     S++ ++++
Sbjct: 599 NILR---------MMGCVKKQKSARGIE-TRPAQVILPMSPNHGTFGGDGMYSESKLSLE 648

Query: 49  TL-KWWESFNDTSLNKLVKIA-----------LQQNLTILQATERIN----AAKE---NI 89
           TL   W S  ++  N+L               +  N  I +  E++     + KE   N+
Sbjct: 649 TLFNRWHS--ESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIEKMGVRTFSQKEMAFNL 706

Query: 90  LS--------------VRADLFPSSYASISHRFIPNLKTNSTGQLDSDWKIDLFGQRR-- 133
           L               V ADL      +   +F+P LK   T +L  +  ++    R+  
Sbjct: 707 LGLLTPEVVELCQKSPVMADL------NGGLQFVPELK-EFTAKLRKEL-VETSEVRKAV 758

Query: 134 HIESSLA-------NLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIA----HQILD 182
            IE++L        + D+AYAQV+I     I    P   + + +K+   IA      +LD
Sbjct: 759 SIETALEHKVVNGNSADAAYAQVEIQPRANIQLDFP---ELKPYKQVKQIAPAELEGLLD 815

Query: 183 LYK 185
           L +
Sbjct: 816 LER 818


>1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A {Vibrio
           cholerae} SCOP: b.29.1.8 b.29.1.8 b.68.1.1 PDB: 1w0o_A*
           1kit_A 2w68_A*
          Length = 781

 Score = 30.8 bits (69), Expect = 0.71
 Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 92  VRADLFPSSYASISHRFIPNLKTNSTGQLDSDWKIDLFGQRRHIESSLANLDSAYAQVDI 151
           +   +  + YA+ + R +P +  +S+G L     ++  GQ      +     + Y + ++
Sbjct: 103 LSGGMITNYYANGTQRVLPIISLDSSGNL----VVEFEGQTGRTVLATGTAATEYHKFEL 158

Query: 152 AKLNVISKLIPSYIDARHFKERISIA 177
             L   +     Y D +  ++ I   
Sbjct: 159 VFLPGSNPSASFYFDGKLIRDNIQPT 184


>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase;
           1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D
           1jlr_A* 1jls_B* 1upf_D 1upu_D*
          Length = 243

 Score = 29.1 bits (65), Expect = 2.1
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 211 EIKSIESDIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQ 251
            + +I  D  T ++ F      +  LL   A   L + +K+
Sbjct: 46  AMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKE 86


>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomics,
           JCSG, PSI, protein structure initiative; HET: U5P; 2.30A
           {Thermotoga maritima} SCOP: c.61.1.1
          Length = 221

 Score = 28.7 bits (64), Expect = 2.6
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 224 KSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQ 256
           K FR  +  I+ LL Y AT  L   + +     
Sbjct: 39  KEFRELLREITLLLAYEATRHLKCEEVEVETPI 71


>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A
           {Bacillus stearothermophilus} SCOP: c.89.1.1 PDB:
           4pfk_A* 6pfk_A 1mto_A*
          Length = 319

 Score = 28.5 bits (63), Expect = 3.2
 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 379 DKKIVTKL-QHAVELHKKSMSLSMINYRQGRYSLLDILDIERATAKVEVDL 428
           D+ + ++L   AVEL  +      +  +  +    DI +       ++  +
Sbjct: 260 DRVLASRLGARAVELLLEGKGGRCVGIQNNQLVDHDIAEALANKHTIDQRM 310


>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus
           bulgaricus, transferase; 1.85A {Lactobacillus
           delbrueckii subsp}
          Length = 319

 Score = 28.5 bits (63), Expect = 3.4
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 379 DKKIVTKL-QHAVELHKKSMSLSMINYRQGRYSLLDILDIERATAKVEVDL 428
           D+ + +KL   AV L  +      +    G+ +  DILD+   + + + DL
Sbjct: 260 DRVLASKLGSEAVHLLLEGKGGLAVGIENGKVTSHDILDLFDESHRGDYDL 310


>2ehj_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA,
           national project on protein structural and functional
           analyses; 2.80A {Escherichia coli}
          Length = 208

 Score = 28.4 bits (63), Expect = 3.8
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 224 KSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIR 279
           K FR     + +LL Y AT  L   +     +   + I     I    I   P +R
Sbjct: 26  KRFRELASEVGSLLTYEATADLETEKVTIEGWNGPVEID---QIKGKKITVVPILR 78


>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase,
           antibiotic; 1.75A {Streptomyces clavuligerus} SCOP:
           c.42.1.1 PDB: 1gq7_A
          Length = 313

 Score = 27.9 bits (61), Expect = 4.6
 Identities = 17/144 (11%), Positives = 37/144 (25%), Gaps = 9/144 (6%)

Query: 272 IRNRPDIRYQEKKLADSVAKIGIAKSDLYPSLSLNGSIALTHDNSFPGYNTHWSFGPKLY 331
             +  DI      +  ++       S L  + +    I   H  +             L 
Sbjct: 80  CVDAGDINLTPFDMNIAIDTAQSHLSGLLKANAAFLMIGGDHSLTVAALRAVAEQHGPLA 139

Query: 332 LPIFDK---------GKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKI 382
           +   D          G    +         E+ I     V   I+       S++  +  
Sbjct: 140 VVHLDAHSDTNPAFYGGRYHHGTPFRHGIDEKLIDPAAMVQIGIRGHNPKPDSLDYARGH 199

Query: 383 VTKLQHAVELHKKSMSLSMINYRQ 406
             ++  A E  +  +  +    R+
Sbjct: 200 GVRVVTADEFGELGVGGTADLIRE 223


>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle
           structural genomics center for infectious disease,
           ssgcid; 2.60A {Burkholderia pseudomallei}
          Length = 217

 Score = 27.8 bits (62), Expect = 4.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 224 KSFRMNVHNISTLLGYPATEFLHYMQKQ 251
           ++FR  +  I+ L+GY  T  L    K+
Sbjct: 34  RTFRELLREITLLMGYEITRNLPITTKR 61


>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage,
           oligomerization, structural genomics; 2.10A {Thermus
           thermophilus HB8} SCOP: c.61.1.1
          Length = 208

 Score = 28.0 bits (62), Expect = 4.9
 Identities = 10/51 (19%), Positives = 16/51 (31%)

Query: 218 DIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIP 268
           D  T  K FR     ++ L+ Y A   L   +           + +  G  
Sbjct: 20  DKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPARVKVLSGKK 70


>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A
           {Bacillus caldolyticus} SCOP: c.61.1.1
          Length = 209

 Score = 27.7 bits (61), Expect = 5.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 218 DIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQ 251
           D  T  K FR  V  ++TL+ +  T  L   + +
Sbjct: 21  DKNTGTKEFRELVDEVATLMAFEITRDLPLEEVE 54


>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP,
           caseinolytic protease, protease TI, heat shock protein
           F21.5, hydrolase; 1.90A {Escherichia coli} SCOP:
           c.14.1.1 PDB: 1tyf_A 2fzs_A* 1yg8_A 2zl2_A 2zl0_A 2zl4_A
           2zl3_A
          Length = 193

 Score = 27.1 bits (60), Expect = 7.5
 Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 1/75 (1%)

Query: 8   FSLFIVLLAGCTVGPEYTKPHMPLLPTQFSIGNSKNLINI-DTLKWWESFNDTSLNKLVK 66
            S+   LL     G  +  P+  ++  Q   G      +I    +            +  
Sbjct: 96  ASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAL 155

Query: 67  IALQQNLTILQATER 81
              Q    I + TER
Sbjct: 156 HTGQSLEQIERDTER 170


>2e55_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA,
           national project on protein structural and functional
           analyses; 2.15A {Aquifex aeolicus}
          Length = 208

 Score = 27.3 bits (60), Expect = 7.7
 Identities = 6/53 (11%), Positives = 16/53 (30%)

Query: 224 KSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRP 276
           +  R  +  +  +L Y A + +   +K+   +  N             +    
Sbjct: 25  EKLRKTLKELGFMLVYEALKDILLEEKEVRTWIGNKRFNYLNEEEIVFVPILR 77


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0528    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,638,336
Number of extensions: 161151
Number of successful extensions: 454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 31
Length of query: 452
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 356
Effective length of database: 3,365,806
Effective search space: 1198226936
Effective search space used: 1198226936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)