RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus Liberibacter asiaticus str. psy62] (452 letters) >3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic resistance, lipoprotein, palmitate, transmembrane, transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A Length = 474 Score = 182 bits (461), Expect = 2e-46 Identities = 96/457 (21%), Positives = 190/457 (41%), Gaps = 27/457 (5%) Query: 18 CTVGPEYTKPHMPLLPTQFSIG------NSKNLINIDTLKWWESFNDTSLNKLVKIALQQ 71 C++ P+Y +P P+ + G + + W E F D L +L+ +AL+ Sbjct: 1 CSLIPDYQRPEAPV-AAAYPQGQAYGQNTGAAAVPAADIGWREFFRDPQLQQLIGVALEN 59 Query: 72 NLTILQATERINAAKENILSVRADLFPSSYASISH---RFIPNLKTNSTGQLDSDWKIDL 128 N + A + A + RADLFP S R +L T + + S + + L Sbjct: 60 NRDLRVAALNVEAFRAQYRIQRADLFPRIGVDGSGTRQRLPGDLSTTGSPAISSQYGVTL 119 Query: 129 ----------FGQRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIAH 178 R + +L + A+ +++ + +Y+ + + ++ + Sbjct: 120 GTTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVASVATAYLTLKADQAQLQLTK 179 Query: 179 QILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTLLG 238 L Y+K+ +L+ + G S L L + + ++ + + + + + + LLG Sbjct: 180 DTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLG 239 Query: 239 YPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKIGIAKSD 298 L + G+P+DL++ RPDI E +L + A IG A++ Sbjct: 240 SGIPANLPQGLGLDQTLLT----EVPAGLPSDLLQRRPDILEAEHQLMAANASIGAARAA 295 Query: 299 LYPSLSLN---GSIALTHDNSFPGYNTHWSFGPKLYLPIFDKGKIKSNIRRAESSAQEQY 355 +PS+SL G+++ F + W F P + LPIF G +++++ A+ Sbjct: 296 FFPSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIFTAGSLRASLDYAKIQKDINV 355 Query: 356 ITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMINYRQGRYSLLDIL 415 +++ + A +EV + L + + + + V+ + L+ YR G + L +L Sbjct: 356 AQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLADKRYRTGVDNYLTLL 415 Query: 416 DIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452 D +R+ + L + S V+LY A+G G+N Sbjct: 416 DAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGGWNQ 452 >1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A Length = 428 Score = 177 bits (448), Expect = 6e-45 Identities = 53/408 (12%), Positives = 136/408 (33%), Gaps = 24/408 (5%) Query: 60 SLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPS-------SYASISHRFIPNL 112 +L ++ + A N + ++ +AA E I R+ L P +Y++ Sbjct: 2 NLMQVYQQARLSNPELRKSAADRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGIN 61 Query: 113 KTNSTGQLDSDWKIDLFGQRRHIESSLANLDSAYAQVDIAKLNVISKLIPSYIDARHFKE 172 ++ L I + R + + +I +Y + + + Sbjct: 62 SNATSASLQLTQSIFDMSKWRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAID 121 Query: 173 RISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHN 232 +S + + ++ + +F G + + A+ ++ ++ T + V Sbjct: 122 VLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANELTARNNLDNAVEQ 181 Query: 233 ISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIRYQEKKLADSVAKI 292 + + G E + +P + + + + + +I Sbjct: 182 LRQITGNYYPELAALNVENFKTDKP----QPVNALLKEAEKRNLSLLQARLSQDLAREQI 237 Query: 293 GIAKSDLYPSLSLNGSIALTHDNS-------------FPGYNTHWSFGPKLYLPIFDKGK 339 A+ P+L L S ++ + G LPI+ G Sbjct: 238 RQAQDGHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGM 297 Query: 340 IKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKKSMSL 399 + S +++A+ + + + ++ V ++ +IN + + AV + S+ Sbjct: 298 VNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDA 357 Query: 400 SMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIG 447 Y G +++D+LD + +L+ A+ + +++ A+G Sbjct: 358 MEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALG 405 >1yc9_A VCEC, multidrug resistance protein; outer membrane protein; HET: BOG; 1.80A {Vibrio cholerae} Length = 442 Score = 148 bits (374), Expect = 2e-36 Identities = 82/417 (19%), Positives = 179/417 (42%), Gaps = 19/417 (4%) Query: 52 WWESFNDTSLNKLVKIALQQNLTILQATERINAAKENILSVRADLFPSSYASISH----- 106 WW+ + D LN L++ ALQ + ++ A R+ A+ A + S Sbjct: 26 WWQRYQDAQLNHLIEEALQHSPSLCMAMARLKGAQGFARQAGAIRSFDLGLAASATESKV 85 Query: 107 -------RFIPNLKTNSTGQLDSDWKIDLFGQR-RHIESSLANLDSAYAQVDIAKLNVIS 158 T L+ + D +G+ + ++ + L +A A+ A+L + + Sbjct: 86 SERYQSATPPDGWNDYGTLTLNFQYDFDFWGKNRAAVVAATSELAAAEAESVAARLMIST 145 Query: 159 KLIPSYIDARHFKERISIAHQILDLYKKNIELSHLKFTQGATSKLSLVKLEAEIKSIESD 218 + +Y + H L + K +EL ++ G + S+ + +A S+E++ Sbjct: 146 SIANAYAELARLYANQETVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAE 205 Query: 219 IPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDI 278 + +++S ++ + ++ L+G + + + L+ +R DI Sbjct: 206 LLGIQESIQLQKNALAALVGQGPDRAA---SIEEPHITLTSRYGLPSEAGVGLLGHRADI 262 Query: 279 RYQEKKLADSVAKIGIAKSDLYPSLSLN---GSIALTHDNSFPGYNTHWSFGPKLYLPIF 335 + + ++GIA++ YP ++L+ G A D+ F N + GP +YLP+F Sbjct: 263 TAARWRAEAAAQQVGIAQAQFYPDVTLSAFIGYQAFGLDHLFDSGNDAGAIGPAIYLPLF 322 Query: 336 DKGKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKIVTKLQHAVELHKK 395 G+++ + AE+ QE + T++ A+ E+ + +TS + + K + AV+ ++ Sbjct: 323 TGGRLEGQLTSAEARYQEAVAQYNGTLVQALHEIADVVTSSQALQARINKTEQAVQQAEQ 382 Query: 396 SMSLSMINYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGSGYNP 452 ++ ++ Y+ G + LD+L E + + L + + + L A+G G+ Sbjct: 383 ALHIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFSLDLALIHALGGGFET 439 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 60.0 bits (145), Expect = 1e-09 Identities = 59/310 (19%), Positives = 96/310 (30%), Gaps = 139/310 (44%) Query: 13 VLLAGCTVGPEYTKPHMPLLPTQFS--IGNSKNLIN---I---DTLKWWESFNDTSLNKL 64 +L G T G E L + G+S+ L+ I D+ WESF + K Sbjct: 255 LL--GFTPG-E--------LRSYLKGATGHSQGLVTAVAIAETDS---WESFFVSVR-KA 299 Query: 65 VKIAL-------QQ-----NL--TILQATERINAAKEN-------ILSVRADLFPSSYAS 103 + + L + +L +IL+ + EN +LS+ +L + Sbjct: 300 ITV-LFFIGVRCYEAYPNTSLPPSILEDSL------ENNEGVPSPMLSIS-NL---TQEQ 348 Query: 104 ISHRFIPNLKTNSTGQLDSDWKIDLFGQRRHIESSLAN----------LDSAYAQVDIAK 153 + ++ KTNS L + + +E SL N S Y Sbjct: 349 V-QDYVN--KTNS--HLPAG---------KQVEISLVNGAKNLVVSGPPQSLYG------ 388 Query: 154 LNVISKLI--PSYID-AR-HFKER-ISIAHQIL--------------------DLYKKNI 188 LN+ + PS +D +R F ER + +++ L DL K N+ Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448 Query: 189 EL--SHLKF----TQGATSKLSLVKLEAEIKSIESDIPTLEKSFRMNVHNISTL------ 236 ++ T L L I + I L Sbjct: 449 SFNAKDIQIPVYDTF--DGS-DLRVLSGSI------SERI---VDC----IIRLPVKWET 492 Query: 237 -LGYPATEFL 245 + AT L Sbjct: 493 TTQFKATHIL 502 Score = 57.6 bits (139), Expect = 5e-09 Identities = 88/511 (17%), Positives = 151/511 (29%), Gaps = 185/511 (36%) Query: 59 TSLNKLVKIALQQNLTILQAT--ERINAAKENILSVRADLFPSSYASISHRFIPNLKTNS 116 L LV A + LQ + + E + D P++ A + +F+ Sbjct: 18 HVL--LVPTASFFIASQLQEQFNKILPEPTEGFAA---DDEPTTPAELVGKFL------- 65 Query: 117 TGQLDSDWKIDLFGQRRHI-ESSLANLDSAY-AQVDI----AKLNVIS--------KLIP 162 G + S + GQ + L ++ Y DI AKL + +LI Sbjct: 66 -GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124 Query: 163 SYIDARHF-KERISIAHQILDLYK----KNIELSHLKFT----QGATSK----L------ 203 +YI AR K L++ N +L QG T L Sbjct: 125 NYITARIMAKRPFDKKSNSA-LFRAVGEGNAQL----VAIFGGQGNTDDYFEELRDLYQT 179 Query: 204 ------SLVKLEAE-IKSIESDIPTLEKSFR--MNVHN-ISTLLGYPATEFLHYMQKQSN 253 L+K AE + + EK F +N+ + P ++L Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-------- 231 Query: 254 NFQPNLYIPIN---IGI----------------PADLIRNRPDIRYQEKKLADS------ 288 L IPI+ IG+ P +L R+ L + Sbjct: 232 -----LSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL-RSY---------LKGATGHSQG 276 Query: 289 -VAKIGIAKSDLYPSLSLNGSIALTHDNS--------FPGYNTHWSFGPKLYLPIFDKGK 339 V + IA++D + S + F G + ++ P LP Sbjct: 277 LVTAVAIAETDSWESF---------FVSVRKAITVLFFIGVRCYEAY-PNTSLP------ 320 Query: 340 IKSNIRRAESSAQEQYITWQETVLNA-IKEVENALTSIN----EDKKIVTKL----QHAV 390 +I E + ++ N ++V++ + N K++ L ++ V Sbjct: 321 --PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378 Query: 391 ------ELH---------KKSMSL--SMINYRQGR-----YSLLDI--------LDIERA 420 L+ K L S I + + R L + L A Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE-RKLKFSNRFLPVASPFHSHLL--VPA 435 Query: 421 TAKVEVDLSIAKRQLAKSYVDLYIAIGSGYN 451 + + DL D+ I + Y+ Sbjct: 436 SDLINKDLVKNNVSFNAK--DIQIPV---YD 461 Score = 35.7 bits (82), Expect = 0.021 Identities = 68/277 (24%), Positives = 107/277 (38%), Gaps = 80/277 (28%) Query: 169 HFKERISIAHQILDLYKKN-IELS-HLKFTQGATSKLSLVKLEAEIKSIESDIPTLEKSF 226 HFK+ + ILD+ N + L+ H +G + + + E ++ + T EK F Sbjct: 1652 HFKD--TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE-TIVDGKLKT-EKIF 1707 Query: 227 R-MNVHNIS-------TLLGYPATEF----LHYMQKQSNNFQPNLYIPINIG-IPADLIR 273 + +N H+ S LL AT+F L M+K + F+ +L + G IPAD Sbjct: 1708 KEINEHSTSYTFRSEKGLLS--ATQFTQPALTLMEKAA--FE-DLK---SKGLIPADATF 1759 Query: 274 NRPDI-RYQE-KKLADSVAKIGIAKSDLYPSLSLNGSIALTHDNSFPGYNTHWSFGPKLY 331 + Y LAD ++ + + Y +++ +A+ D G Y Sbjct: 1760 AGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ--VAVPRD----------ELGRSNY 1807 Query: 332 LPIFDKGKIKSNIRR-AESSAQE--QYIT--------W-----------QETV----LNA 365 G I N R A S +QE QY+ W Q+ V L A Sbjct: 1808 ------GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA 1861 Query: 366 IKEVENALTSINEDKKIVTKLQHAVELHKKSMSLSMI 402 + V N L I K + +LQ KS+SL + Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQ-------KSLSLEEV 1891 Score = 33.0 bits (75), Expect = 0.13 Identities = 30/159 (18%), Positives = 66/159 (41%), Gaps = 23/159 (14%) Query: 17 GCTVGPEYTKPHMPLL-PTQFSIGNSKNLINID------TLKWWE---SFNDT-SLNKLV 65 G ++T+P + L+ F SK LI D +L + S D S+ LV Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV 1783 Query: 66 KIALQQNLTILQATERINAAKEN--ILSVRADLFPSSYASISHRFIPNLKTNSTGQLDSD 123 ++ + +T+ A R + N ++++ +S++ + +++ TG Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG----- 1838 Query: 124 WKIDLFG----QRRHIES-SLANLDSAYAQVDIAKLNVI 157 W +++ ++++ + L LD+ ++ KL I Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877 Score = 31.8 bits (72), Expect = 0.36 Identities = 30/167 (17%), Positives = 44/167 (26%), Gaps = 59/167 (35%) Query: 302 SLSLN-GSIA---LTHDNSFPGYNTHW-SFGPKLYLP---IFDKGKIKSNI--------- 344 L+L+ GS+ L SF + F L P + + Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67 Query: 345 --RRAESSAQEQYITWQETVLNAI-KEVENALTSINEDKKIVTKLQHAVELHKKSMSLSM 401 E S Q+ + VLN E EN N+ I HA+ Sbjct: 68 VSSLVEPSKVGQF----DQVLNLCLTEFENCYLEGND---I-----HAL-AA-------- 106 Query: 402 INYRQGRYSLLDILDIERATAKVEVDLSIAKRQLAKSYVDLYIAIGS 448 LL D ++L K+Y+ I Sbjct: 107 --------KLLQENDTTLV----------KTKELIKNYITARIMAKR 135 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 32.3 bits (72), Expect = 0.25 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 7/29 (24%) Query: 202 KLSLVKLEAEIKSIESD-IP------TLE 223 K +L KL+A +K D P T+E Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47 Score = 29.6 bits (65), Expect = 1.5 Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 9/34 (26%) Query: 66 KIALQQNLTILQATERI---NAAKENILSVRADL 96 K AL++ LQA+ ++ ++A L+++A + Sbjct: 19 KQALKK----LQASLKLYADDSAPA--LAIKATM 46 Score = 29.2 bits (64), Expect = 1.7 Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 10/29 (34%) Query: 379 DKKIVTKLQHAVELH----------KKSM 397 +K+ + KLQ +++L+ K +M Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46 Score = 29.2 bits (64), Expect = 2.1 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 13/32 (40%) Query: 283 KKLADSVAKIGIAKSDLY-----PSLSLNGSI 309 KKL S+ K LY P+L++ ++ Sbjct: 23 KKLQASL------K--LYADDSAPALAIKATM 46 Score = 27.3 bits (59), Expect = 7.0 Identities = 6/15 (40%), Positives = 8/15 (53%) Query: 305 LNGSIALTHDNSFPG 319 L S+ L D+S P Sbjct: 25 LQASLKLYADDSAPA 39 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 31.3 bits (70), Expect = 0.40 Identities = 56/243 (23%), Positives = 95/243 (39%), Gaps = 82/243 (33%) Query: 2 NILRAIFSLFIVLLAGCTV------GPEYTKPH---MPLLPTQFSIGN----SKNLINID 48 NILR + GC G E T+P +P+ P + G S++ ++++ Sbjct: 599 NILR---------MMGCVKKQKSARGIE-TRPAQVILPMSPNHGTFGGDGMYSESKLSLE 648 Query: 49 TL-KWWESFNDTSLNKLVKIA-----------LQQNLTILQATERIN----AAKE---NI 89 TL W S ++ N+L + N I + E++ + KE N+ Sbjct: 649 TLFNRWHS--ESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIEKMGVRTFSQKEMAFNL 706 Query: 90 LS--------------VRADLFPSSYASISHRFIPNLKTNSTGQLDSDWKIDLFGQRR-- 133 L V ADL + +F+P LK T +L + ++ R+ Sbjct: 707 LGLLTPEVVELCQKSPVMADL------NGGLQFVPELK-EFTAKLRKEL-VETSEVRKAV 758 Query: 134 HIESSLA-------NLDSAYAQVDIAKLNVISKLIPSYIDARHFKERISIA----HQILD 182 IE++L + D+AYAQV+I I P + + +K+ IA +LD Sbjct: 759 SIETALEHKVVNGNSADAAYAQVEIQPRANIQLDFP---ELKPYKQVKQIAPAELEGLLD 815 Query: 183 LYK 185 L + Sbjct: 816 LER 818 >1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A {Vibrio cholerae} SCOP: b.29.1.8 b.29.1.8 b.68.1.1 PDB: 1w0o_A* 1kit_A 2w68_A* Length = 781 Score = 30.8 bits (69), Expect = 0.71 Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 4/86 (4%) Query: 92 VRADLFPSSYASISHRFIPNLKTNSTGQLDSDWKIDLFGQRRHIESSLANLDSAYAQVDI 151 + + + YA+ + R +P + +S+G L ++ GQ + + Y + ++ Sbjct: 103 LSGGMITNYYANGTQRVLPIISLDSSGNL----VVEFEGQTGRTVLATGTAATEYHKFEL 158 Query: 152 AKLNVISKLIPSYIDARHFKERISIA 177 L + Y D + ++ I Sbjct: 159 VFLPGSNPSASFYFDGKLIRDNIQPT 184 >1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D* Length = 243 Score = 29.1 bits (65), Expect = 2.1 Identities = 9/41 (21%), Positives = 17/41 (41%) Query: 211 EIKSIESDIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQ 251 + +I D T ++ F + LL A L + +K+ Sbjct: 46 AMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKE 86 >1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomics, JCSG, PSI, protein structure initiative; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1 Length = 221 Score = 28.7 bits (64), Expect = 2.6 Identities = 10/33 (30%), Positives = 14/33 (42%) Query: 224 KSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQ 256 K FR + I+ LL Y AT L + + Sbjct: 39 KEFRELLREITLLLAYEATRHLKCEEVEVETPI 71 >3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A {Bacillus stearothermophilus} SCOP: c.89.1.1 PDB: 4pfk_A* 6pfk_A 1mto_A* Length = 319 Score = 28.5 bits (63), Expect = 3.2 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Query: 379 DKKIVTKL-QHAVELHKKSMSLSMINYRQGRYSLLDILDIERATAKVEVDL 428 D+ + ++L AVEL + + + + DI + ++ + Sbjct: 260 DRVLASRLGARAVELLLEGKGGRCVGIQNNQLVDHDIAEALANKHTIDQRM 310 >1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp} Length = 319 Score = 28.5 bits (63), Expect = 3.4 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 379 DKKIVTKL-QHAVELHKKSMSLSMINYRQGRYSLLDILDIERATAKVEVDL 428 D+ + +KL AV L + + G+ + DILD+ + + + DL Sbjct: 260 DRVLASKLGSEAVHLLLEGKGGLAVGIENGKVTSHDILDLFDESHRGDYDL 310 >2ehj_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Escherichia coli} Length = 208 Score = 28.4 bits (63), Expect = 3.8 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 3/56 (5%) Query: 224 KSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRPDIR 279 K FR + +LL Y AT L + + + I I I P +R Sbjct: 26 KRFRELASEVGSLLTYEATADLETEKVTIEGWNGPVEID---QIKGKKITVVPILR 78 >1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibiotic; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A Length = 313 Score = 27.9 bits (61), Expect = 4.6 Identities = 17/144 (11%), Positives = 37/144 (25%), Gaps = 9/144 (6%) Query: 272 IRNRPDIRYQEKKLADSVAKIGIAKSDLYPSLSLNGSIALTHDNSFPGYNTHWSFGPKLY 331 + DI + ++ S L + + I H + L Sbjct: 80 CVDAGDINLTPFDMNIAIDTAQSHLSGLLKANAAFLMIGGDHSLTVAALRAVAEQHGPLA 139 Query: 332 LPIFDK---------GKIKSNIRRAESSAQEQYITWQETVLNAIKEVENALTSINEDKKI 382 + D G + E+ I V I+ S++ + Sbjct: 140 VVHLDAHSDTNPAFYGGRYHHGTPFRHGIDEKLIDPAAMVQIGIRGHNPKPDSLDYARGH 199 Query: 383 VTKLQHAVELHKKSMSLSMINYRQ 406 ++ A E + + + R+ Sbjct: 200 GVRVVTADEFGELGVGGTADLIRE 223 >3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} Length = 217 Score = 27.8 bits (62), Expect = 4.8 Identities = 9/28 (32%), Positives = 15/28 (53%) Query: 224 KSFRMNVHNISTLLGYPATEFLHYMQKQ 251 ++FR + I+ L+GY T L K+ Sbjct: 34 RTFRELLREITLLMGYEITRNLPITTKR 61 >1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics; 2.10A {Thermus thermophilus HB8} SCOP: c.61.1.1 Length = 208 Score = 28.0 bits (62), Expect = 4.9 Identities = 10/51 (19%), Positives = 16/51 (31%) Query: 218 DIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIP 268 D T K FR ++ L+ Y A L + + + G Sbjct: 20 DKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPARVKVLSGKK 70 >1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1 Length = 209 Score = 27.7 bits (61), Expect = 5.6 Identities = 10/34 (29%), Positives = 16/34 (47%) Query: 218 DIPTLEKSFRMNVHNISTLLGYPATEFLHYMQKQ 251 D T K FR V ++TL+ + T L + + Sbjct: 21 DKNTGTKEFRELVDEVATLMAFEITRDLPLEEVE 54 >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 1yg8_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A Length = 193 Score = 27.1 bits (60), Expect = 7.5 Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 1/75 (1%) Query: 8 FSLFIVLLAGCTVGPEYTKPHMPLLPTQFSIGNSKNLINI-DTLKWWESFNDTSLNKLVK 66 S+ LL G + P+ ++ Q G +I + + Sbjct: 96 ASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAL 155 Query: 67 IALQQNLTILQATER 81 Q I + TER Sbjct: 156 HTGQSLEQIERDTER 170 >2e55_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.15A {Aquifex aeolicus} Length = 208 Score = 27.3 bits (60), Expect = 7.7 Identities = 6/53 (11%), Positives = 16/53 (30%) Query: 224 KSFRMNVHNISTLLGYPATEFLHYMQKQSNNFQPNLYIPINIGIPADLIRNRP 276 + R + + +L Y A + + +K+ + N + Sbjct: 25 EKLRKTLKELGFMLVYEALKDILLEEKEVRTWIGNKRFNYLNEEEIVFVPILR 77 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.133 0.376 Gapped Lambda K H 0.267 0.0528 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,638,336 Number of extensions: 161151 Number of successful extensions: 454 Number of sequences better than 10.0: 1 Number of HSP's gapped: 443 Number of HSP's successfully gapped: 31 Length of query: 452 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 356 Effective length of database: 3,365,806 Effective search space: 1198226936 Effective search space used: 1198226936 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.6 bits)