Query gi|254780931|ref|YP_003065344.1| hypothetical protein CLIBASIA_04150 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 56
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 18:49:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780931.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2beq_A E2 glycoprotein; viral 18.7 80 0.0024 14.6 2.6 23 7-29 5-27 (38)
2 >3h3g_B Parathyroid hormone-re 18.5 45 0.0013 16.0 1.0 18 31-48 2-19 (26)
3 >1yt3_A Ribonuclease D, RNAse 13.1 1.1E+02 0.0033 13.8 2.2 21 1-21 5-25 (82)
4 >2iaf_A Hypothetical protein S 11.0 78 0.0023 14.7 0.5 19 19-37 10-28 (151)
5 >1el6_A Baseplate structural p 10.8 81 0.0024 14.6 0.6 25 13-37 49-73 (112)
6 >2d0w_A Cytochrome CL; electro 10.2 1.1E+02 0.0032 13.9 1.0 24 3-26 1-25 (28)
7 >3du6_A Telomerase reverse tra 8.5 1.7E+02 0.0049 12.8 2.3 19 6-24 17-35 (35)
8 >1gqa_A Cytochrome C'; electro 7.7 1.8E+02 0.0053 12.7 2.4 19 7-25 11-29 (130)
9 >2jak_A Serine/threonine-prote 6.6 2.1E+02 0.0061 12.3 2.3 30 4-33 23-59 (63)
10 >1wxc_A Tyrosinase; tyrosinase 6.5 1.7E+02 0.005 12.8 0.7 7 37-43 87-93 (127)
No 1
>>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} (A:)
Probab=18.71 E-value=80 Score=14.60 Aligned_cols=23 Identities=43% Similarity=0.492 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999754202334245
Q gi|254780931|r 7 KEYFKTISTVFGKLGDMRAQNIF 29 (56)
Q Consensus 7 keyfktistvfgklgdmraqnif 29 (56)
.|-..+.++..|||.|.-.||.-
T Consensus 5 qeslsstasalgklqdvvnqnaq 27 (38)
T 2beq_A 5 QESLTTTSTALGKLQDVVNQNAQ 27 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988989999889999987389
No 2
>>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, periplasm, sugar transport, transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} (B:)
Probab=18.52 E-value=45 Score=15.99 Aligned_cols=18 Identities=50% Similarity=0.613 Sum_probs=12.9
Q ss_pred HHCCCCHHHHHHHHHHHH
Q ss_conf 320532289999999999
Q gi|254780931|r 31 KDIKDKDIIFYLHILIAF 48 (56)
Q Consensus 31 kdikdkdiifylhiliaf 48 (56)
|.|.|-.--|+||-|||-
T Consensus 2 ksiqdlrrrfflhhliae 19 (26)
T 3h3g_B 2 KSIQDLRRRFFLHHLIAE 19 (26)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 638999999999999999
No 3
>>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} (A:294-375)
Probab=13.06 E-value=1.1e+02 Score=13.77 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=17.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 987654999999999997542
Q gi|254780931|r 1 MDYPCNKEYFKTISTVFGKLG 21 (56)
Q Consensus 1 mdypcnkeyfktistvfgklg 21 (56)
||||-+|.-||.|....-...
T Consensus 5 ~d~p~yK~~~k~lk~~v~~~a 25 (82)
T 1yt3_A 5 MDMPGYRKAFKAIKSLITDVS 25 (82)
T ss_dssp GGSTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 456206999999999999999
No 4
>>2iaf_A Hypothetical protein SDHL; MCSG, PSI2, MAD, structural genomics, L-serine dehydratase, protein structure initiative; 2.05A {Legionella pneumophila} (A:)
Probab=11.00 E-value=78 Score=14.65 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHCCCCH
Q ss_conf 5420233424553205322
Q gi|254780931|r 19 KLGDMRAQNIFLKDIKDKD 37 (56)
Q Consensus 19 klgdmraqniflkdikdkd 37 (56)
..|-|||-++|+..++++.
T Consensus 10 TvGPmraa~~f~~~l~~~~ 28 (151)
T 2iaf_A 10 TVGPXLAANAFLQLLEQKN 28 (151)
T ss_dssp SHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 7999999999999986621
No 5
>>1el6_A Baseplate structural protein GP11; beta annulus, coiled coil, A fiber attachment protein; 2.00A {Enterobacteria phage T4} (A:78-189)
Probab=10.83 E-value=81 Score=14.57 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 9999975420233424553205322
Q gi|254780931|r 13 ISTVFGKLGDMRAQNIFLKDIKDKD 37 (56)
Q Consensus 13 istvfgklgdmraqniflkdikdkd 37 (56)
.++|.-|+-||++..+.++..+++.
T Consensus 49 ~~~V~~~f~e~~~~~~~~~~v~r~~ 73 (112)
T 1el6_A 49 VAKVRVALQEAIASFTAINSYKDHP 73 (112)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHEEEEEECC
T ss_conf 9999999999873001000012058
No 6
>>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans} (A:82-109)
Probab=10.23 E-value=1.1e+02 Score=13.91 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 765499999999999754-202334
Q gi|254780931|r 3 YPCNKEYFKTISTVFGKL-GDMRAQ 26 (56)
Q Consensus 3 ypcnkeyfktistvfgkl-gdmraq 26 (56)
||-|+.----.+|+||-- |-|-.|
T Consensus 1 YP~n~tD~GlFetifGga~gmMGPq 25 (28)
T 2d0w_A 1 YPKNTTDKGLFETIFGGANGMMGPH 25 (28)
T ss_dssp SGGGGSHHHHHHHHHHCCSTTCCCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 0002689999999974754345221
No 7
>>3du6_A Telomerase reverse transcriptase; RNA-directed DNA polymerase, transferase; 2.71A {Tribolium castaneum} PDB: 3du5_A (A:135-169)
Probab=8.45 E-value=1.7e+02 Score=12.84 Aligned_cols=19 Identities=42% Similarity=0.606 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 4999999999997542023
Q gi|254780931|r 6 NKEYFKTISTVFGKLGDMR 24 (56)
Q Consensus 6 nkeyfktistvfgklgdmr 24 (56)
..||..--|.||.||..|.
T Consensus 17 keeyisfeskvfhklkkmk 35 (35)
T 3du6_A 17 KEEYISFESKVFHKLKKMK 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999876
No 8
>>1gqa_A Cytochrome C'; electron transport, heme; HET: HEC; 1.8A {Rhodobacter sphaeroides} (A:)
Probab=7.73 E-value=1.8e+02 Score=12.66 Aligned_cols=19 Identities=37% Similarity=0.658 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999975420233
Q gi|254780931|r 7 KEYFKTISTVFGKLGDMRA 25 (56)
Q Consensus 7 keyfktistvfgklgdmra 25 (56)
+.+|+.+...|+.||+|--
T Consensus 11 q~~mk~~~~~~~~l~~m~k 29 (130)
T 1gqa_A 11 KGYFSLVALEFGPLAAMAK 29 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 9999999998999999986
No 9
>>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation, PP2A regulatory subunit; 2.60A {Homo sapiens} (A:166-228)
Probab=6.57 E-value=2.1e+02 Score=12.33 Aligned_cols=30 Identities=37% Similarity=0.721 Sum_probs=21.6
Q ss_pred CCCHHHHHHHH-HHHHHHHHHHH------HHHHHHHC
Q ss_conf 65499999999-99975420233------42455320
Q gi|254780931|r 4 PCNKEYFKTIS-TVFGKLGDMRA------QNIFLKDI 33 (56)
Q Consensus 4 pcnkeyfktis-tvfgklgdmra------qniflkdi 33 (56)
|-..+|.|||- -++||+-.+|+ +|+|+.=|
T Consensus 23 pRERd~LKtiLHRIYgKf~~lR~fIRk~inniF~~fi 59 (63)
T 2jak_A 23 PRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6899999999999999716379999999999999985
No 10
>>1wxc_A Tyrosinase; tyrosinase, binary complex, type-3 copper, oxidoreductase/metal transport complex; 1.20A {Streptomyces castaneoglobisporus} PDB: 1wx2_A 1wx4_A 1wx5_A 1wx3_A 2ahk_A 2ahl_A 2zmx_A 2zmy_A 2zmz_A (A:9-92,A:207-249)
Probab=6.45 E-value=1.7e+02 Score=12.82 Aligned_cols=7 Identities=57% Similarity=1.251 Sum_probs=0.0
Q ss_pred HHHHHHH
Q ss_conf 2899999
Q gi|254780931|r 37 DIIFYLH 43 (56)
Q Consensus 37 diifylh 43 (56)
|-|||||
T Consensus 87 DPiF~lH 93 (127)
T 1wxc_A 87 DPVFWLH 93 (127)
T ss_dssp STHHHHH
T ss_pred CHHHHHH
T ss_conf 5268887
Done!