Query         gi|254780931|ref|YP_003065344.1| hypothetical protein CLIBASIA_04150 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 56
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 10:35:44 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780931.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1y02a1 a.140.2.1 (A:71-114) R   9.9      54  0.0039   13.4   1.4   16   29-44      5-20  (44)
  2 d2iafa1 d.81.2.1 (A:4-148) L-s   8.8      43  0.0032   13.9   0.5   17   20-36      5-21  (145)
  3 d1yt3a2 a.60.8.3 (A:295-375) R   7.4      76  0.0055   12.6   2.2   21    1-21      4-24  (81)
  4 d1ny9a_ a.181.1.1 (A:) Transcr   6.7      82   0.006   12.4   1.8   15    3-17     46-60  (94)
  5 d2ccya_ a.24.3.2 (A:) Cytochro   5.2   1E+02  0.0074   11.9   2.4   21    7-27     12-32  (127)
  6 d1bbha_ a.24.3.2 (A:) Cytochro   5.1   1E+02  0.0075   11.8   2.4   19    6-24     12-30  (131)
  7 d1gqaa_ a.24.3.2 (A:) Cytochro   5.0 1.1E+02  0.0077   11.8   2.4   19    7-25     11-29  (130)
  8 d1e85a_ a.24.3.2 (A:) Cytochro   4.8 1.1E+02   0.008   11.7   2.2   18    7-24     13-30  (125)
  9 d1wy6a1 a.118.20.1 (A:7-167) H   4.6 1.1E+02  0.0082   11.6   3.0   27    6-32    119-145 (161)
 10 d1buoa_ d.42.1.1 (A:) Promyelo   4.3 1.2E+02  0.0086   11.5   1.9   43    3-55     40-82  (121)

No 1  
>d1y02a1 a.140.2.1 (A:71-114) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.89  E-value=54  Score=13.40  Aligned_cols=16  Identities=38%  Similarity=0.422  Sum_probs=11.8

Q ss_pred             HHHHCCCCHHHHHHHH
Q ss_conf             5532053228999999
Q gi|254780931|r   29 FLKDIKDKDIIFYLHI   44 (56)
Q Consensus        29 flkdikdkdiifylhi   44 (56)
                      -|-..|-||.++||+.
T Consensus         5 eLm~LkvkDLr~YL~l   20 (44)
T d1y02a1           5 ELMKMKVKDLRDYLSL   20 (44)
T ss_dssp             HHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9988417899999998


No 2  
>d2iafa1 d.81.2.1 (A:4-148) L-serine dehydratase SdhL, N-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=8.75  E-value=43  Score=13.91  Aligned_cols=17  Identities=41%  Similarity=0.620  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHCCCC
Q ss_conf             42023342455320532
Q gi|254780931|r   20 LGDMRAQNIFLKDIKDK   36 (56)
Q Consensus        20 lgdmraqniflkdikdk   36 (56)
                      .|-|||-+.|+..++++
T Consensus         5 vGPmrAa~~F~~~l~~~   21 (145)
T d2iafa1           5 VGPMLAANAFLQLLEQK   21 (145)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHC
T ss_conf             88999999999999767


No 3  
>d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli [TaxId: 562]}
Probab=7.40  E-value=76  Score=12.57  Aligned_cols=21  Identities=29%  Similarity=0.564  Sum_probs=17.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHH
Q ss_conf             987654999999999997542
Q gi|254780931|r    1 MDYPCNKEYFKTISTVFGKLG   21 (56)
Q Consensus         1 mdypcnkeyfktistvfgklg   21 (56)
                      +|||-.|.-||.+..+.....
T Consensus         4 ~d~P~yK~~~K~lk~~v~~~A   24 (81)
T d1yt3a2           4 MDMPGYRKAFKAIKSLITDVS   24 (81)
T ss_dssp             GGSTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHH
T ss_conf             321247999999999999999


No 4  
>d1ny9a_ a.181.1.1 (A:) Transcriptional activator TipA-S {Streptomyces lividans [TaxId: 1916]}
Probab=6.71  E-value=82  Score=12.37  Aligned_cols=15  Identities=20%  Similarity=0.658  Sum_probs=10.7

Q ss_pred             CCCCHHHHHHHHHHH
Q ss_conf             765499999999999
Q gi|254780931|r    3 YPCNKEYFKTISTVF   17 (56)
Q Consensus         3 ypcnkeyfktistvf   17 (56)
                      |||++|.++-+...+
T Consensus        46 ~~~s~e~~~~Lg~mY   60 (94)
T d1ny9a_          46 YDCGYEMHTCLGEMY   60 (94)
T ss_dssp             SCCCHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHH
T ss_conf             799999999999997


No 5  
>d2ccya_ a.24.3.2 (A:) Cytochrome c' {Rhodospirillum molischianum [TaxId: 1083]}
Probab=5.23  E-value=1e+02  Score=11.88  Aligned_cols=21  Identities=10%  Similarity=0.248  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999997542023342
Q gi|254780931|r    7 KEYFKTISTVFGKLGDMRAQN   27 (56)
Q Consensus         7 keyfktistvfgklgdmraqn   27 (56)
                      +..|+.|..-++.||.|--..
T Consensus        12 q~~mk~i~~~~~~l~~m~kg~   32 (127)
T d2ccya_          12 QGLMQTLKSQWVPIAGFAAGK   32 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999999999998444


No 6  
>d1bbha_ a.24.3.2 (A:) Cytochrome c' {Chromatium vinosum [TaxId: 1049]}
Probab=5.11  E-value=1e+02  Score=11.83  Aligned_cols=19  Identities=11%  Similarity=0.134  Sum_probs=16.0

Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q ss_conf             4999999999997542023
Q gi|254780931|r    6 NKEYFKTISTVFGKLGDMR   24 (56)
Q Consensus         6 nkeyfktistvfgklgdmr   24 (56)
                      .+..|+.|...++.+|+|-
T Consensus        12 Rq~~mk~i~~~~~~l~~m~   30 (131)
T d1bbha_          12 RQAGYEFMGWNMGKIKANL   30 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999997


No 7  
>d1gqaa_ a.24.3.2 (A:) Cytochrome c' {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.00  E-value=1.1e+02  Score=11.79  Aligned_cols=19  Identities=37%  Similarity=0.658  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999975420233
Q gi|254780931|r    7 KEYFKTISTVFGKLGDMRA   25 (56)
Q Consensus         7 keyfktistvfgklgdmra   25 (56)
                      +..|+.+..-|+.+|+|--
T Consensus        11 q~~mk~~~~~~~~l~~m~k   29 (130)
T d1gqaa_          11 KGYFSLVALEFGPLAAMAK   29 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999986


No 8  
>d1e85a_ a.24.3.2 (A:) Cytochrome c' {Alcaligenes sp. [TaxId: 512]}
Probab=4.77  E-value=1.1e+02  Score=11.70  Aligned_cols=18  Identities=11%  Similarity=0.377  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999997542023
Q gi|254780931|r    7 KEYFKTISTVFGKLGDMR   24 (56)
Q Consensus         7 keyfktistvfgklgdmr   24 (56)
                      +..|+.+..-++.||+|-
T Consensus        13 q~~mk~~~~~~~~l~~m~   30 (125)
T d1e85a_          13 QSALTLMASHFGRMTPVV   30 (125)
T ss_dssp             HHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999997


No 9  
>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=4.61  E-value=1.1e+02  Score=11.63  Aligned_cols=27  Identities=19%  Similarity=0.397  Sum_probs=19.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             499999999999754202334245532
Q gi|254780931|r    6 NKEYFKTISTVFGKLGDMRAQNIFLKD   32 (56)
Q Consensus         6 nkeyfktistvfgklgdmraqniflkd   32 (56)
                      +.|..-.|.+.++|+|+.|..|-.|+.
T Consensus       119 ~~~~llkia~A~kkig~~re~nell~~  145 (161)
T d1wy6a1         119 SASILVAIANALRRVGDERDATTLLIE  145 (161)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             879999999999885224448999999


No 10 
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.35  E-value=1.2e+02  Score=11.52  Aligned_cols=43  Identities=16%  Similarity=0.312  Sum_probs=0.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             76549999999999975420233424553205322899999999999999864
Q gi|254780931|r    3 YPCNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIFYLHILIAFEKVIDYL   55 (56)
Q Consensus         3 ypcnkeyfktistvfgklgdmraqniflkdikdkdiifylhiliafekvidyl   55 (56)
                      +||+|-..-.-|..|-.+-.-..+.+-+.++.          --+|+.+++|+
T Consensus        40 ~~aHk~vLaa~S~~F~~lf~~~~~~i~~~~v~----------~~~f~~ll~~~   82 (121)
T d1buoa_          40 FHAHRTVLACTSKMFEILFHRNSQHYTLDFLS----------PKTFQQILEYA   82 (121)
T ss_dssp             EEECHHHHHHHCHHHHHHTTSCCSEEEECSSC----------HHHHHHHHHHH
T ss_pred             EEEEHHHHCCCCHHHHHHCCCCCCEEECCCCC----------HHHHHHHHHHE
T ss_conf             99887784025722233145765145327789----------79999997741


Done!