Query gi|254780931|ref|YP_003065344.1| hypothetical protein CLIBASIA_04150 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 56 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 10:35:44 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780931.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1y02a1 a.140.2.1 (A:71-114) R 9.9 54 0.0039 13.4 1.4 16 29-44 5-20 (44) 2 d2iafa1 d.81.2.1 (A:4-148) L-s 8.8 43 0.0032 13.9 0.5 17 20-36 5-21 (145) 3 d1yt3a2 a.60.8.3 (A:295-375) R 7.4 76 0.0055 12.6 2.2 21 1-21 4-24 (81) 4 d1ny9a_ a.181.1.1 (A:) Transcr 6.7 82 0.006 12.4 1.8 15 3-17 46-60 (94) 5 d2ccya_ a.24.3.2 (A:) Cytochro 5.2 1E+02 0.0074 11.9 2.4 21 7-27 12-32 (127) 6 d1bbha_ a.24.3.2 (A:) Cytochro 5.1 1E+02 0.0075 11.8 2.4 19 6-24 12-30 (131) 7 d1gqaa_ a.24.3.2 (A:) Cytochro 5.0 1.1E+02 0.0077 11.8 2.4 19 7-25 11-29 (130) 8 d1e85a_ a.24.3.2 (A:) Cytochro 4.8 1.1E+02 0.008 11.7 2.2 18 7-24 13-30 (125) 9 d1wy6a1 a.118.20.1 (A:7-167) H 4.6 1.1E+02 0.0082 11.6 3.0 27 6-32 119-145 (161) 10 d1buoa_ d.42.1.1 (A:) Promyelo 4.3 1.2E+02 0.0086 11.5 1.9 43 3-55 40-82 (121) No 1 >d1y02a1 a.140.2.1 (A:71-114) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Probab=9.89 E-value=54 Score=13.40 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=11.8 Q ss_pred HHHHCCCCHHHHHHHH Q ss_conf 5532053228999999 Q gi|254780931|r 29 FLKDIKDKDIIFYLHI 44 (56) Q Consensus 29 flkdikdkdiifylhi 44 (56) -|-..|-||.++||+. T Consensus 5 eLm~LkvkDLr~YL~l 20 (44) T d1y02a1 5 ELMKMKVKDLRDYLSL 20 (44) T ss_dssp HHHTSCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9988417899999998 No 2 >d2iafa1 d.81.2.1 (A:4-148) L-serine dehydratase SdhL, N-terminal domain {Legionella pneumophila [TaxId: 446]} Probab=8.75 E-value=43 Score=13.91 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=13.1 Q ss_pred HHHHHHHHHHHHHCCCC Q ss_conf 42023342455320532 Q gi|254780931|r 20 LGDMRAQNIFLKDIKDK 36 (56) Q Consensus 20 lgdmraqniflkdikdk 36 (56) .|-|||-+.|+..++++ T Consensus 5 vGPmrAa~~F~~~l~~~ 21 (145) T d2iafa1 5 VGPMLAANAFLQLLEQK 21 (145) T ss_dssp HHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 88999999999999767 No 3 >d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli [TaxId: 562]} Probab=7.40 E-value=76 Score=12.57 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=17.2 Q ss_pred CCCCCCHHHHHHHHHHHHHHH Q ss_conf 987654999999999997542 Q gi|254780931|r 1 MDYPCNKEYFKTISTVFGKLG 21 (56) Q Consensus 1 mdypcnkeyfktistvfgklg 21 (56) +|||-.|.-||.+..+..... T Consensus 4 ~d~P~yK~~~K~lk~~v~~~A 24 (81) T d1yt3a2 4 MDMPGYRKAFKAIKSLITDVS 24 (81) T ss_dssp GGSTTHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHH T ss_conf 321247999999999999999 No 4 >d1ny9a_ a.181.1.1 (A:) Transcriptional activator TipA-S {Streptomyces lividans [TaxId: 1916]} Probab=6.71 E-value=82 Score=12.37 Aligned_cols=15 Identities=20% Similarity=0.658 Sum_probs=10.7 Q ss_pred CCCCHHHHHHHHHHH Q ss_conf 765499999999999 Q gi|254780931|r 3 YPCNKEYFKTISTVF 17 (56) Q Consensus 3 ypcnkeyfktistvf 17 (56) |||++|.++-+...+ T Consensus 46 ~~~s~e~~~~Lg~mY 60 (94) T d1ny9a_ 46 YDCGYEMHTCLGEMY 60 (94) T ss_dssp SCCCHHHHHHHHHHT T ss_pred CCCCHHHHHHHHHHH T ss_conf 799999999999997 No 5 >d2ccya_ a.24.3.2 (A:) Cytochrome c' {Rhodospirillum molischianum [TaxId: 1083]} Probab=5.23 E-value=1e+02 Score=11.88 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999997542023342 Q gi|254780931|r 7 KEYFKTISTVFGKLGDMRAQN 27 (56) Q Consensus 7 keyfktistvfgklgdmraqn 27 (56) +..|+.|..-++.||.|--.. T Consensus 12 q~~mk~i~~~~~~l~~m~kg~ 32 (127) T d2ccya_ 12 QGLMQTLKSQWVPIAGFAAGK 32 (127) T ss_dssp HHHHHHHHHHHHHHHHHHTTS T ss_pred HHHHHHHHHHHHHHHHHHHCC T ss_conf 999999999999999998444 No 6 >d1bbha_ a.24.3.2 (A:) Cytochrome c' {Chromatium vinosum [TaxId: 1049]} Probab=5.11 E-value=1e+02 Score=11.83 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=16.0 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 4999999999997542023 Q gi|254780931|r 6 NKEYFKTISTVFGKLGDMR 24 (56) Q Consensus 6 nkeyfktistvfgklgdmr 24 (56) .+..|+.|...++.+|+|- T Consensus 12 Rq~~mk~i~~~~~~l~~m~ 30 (131) T d1bbha_ 12 RQAGYEFMGWNMGKIKANL 30 (131) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999997 No 7 >d1gqaa_ a.24.3.2 (A:) Cytochrome c' {Rhodobacter sphaeroides [TaxId: 1063]} Probab=5.00 E-value=1.1e+02 Score=11.79 Aligned_cols=19 Identities=37% Similarity=0.658 Sum_probs=15.4 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999975420233 Q gi|254780931|r 7 KEYFKTISTVFGKLGDMRA 25 (56) Q Consensus 7 keyfktistvfgklgdmra 25 (56) +..|+.+..-|+.+|+|-- T Consensus 11 q~~mk~~~~~~~~l~~m~k 29 (130) T d1gqaa_ 11 KGYFSLVALEFGPLAAMAK 29 (130) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHC T ss_conf 9999999999999999986 No 8 >d1e85a_ a.24.3.2 (A:) Cytochrome c' {Alcaligenes sp. [TaxId: 512]} Probab=4.77 E-value=1.1e+02 Score=11.70 Aligned_cols=18 Identities=11% Similarity=0.377 Sum_probs=15.2 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999997542023 Q gi|254780931|r 7 KEYFKTISTVFGKLGDMR 24 (56) Q Consensus 7 keyfktistvfgklgdmr 24 (56) +..|+.+..-++.||+|- T Consensus 13 q~~mk~~~~~~~~l~~m~ 30 (125) T d1e85a_ 13 QSALTLMASHFGRMTPVV 30 (125) T ss_dssp HHHHHHHHHHHHTTHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999999997 No 9 >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Probab=4.61 E-value=1.1e+02 Score=11.63 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=19.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 499999999999754202334245532 Q gi|254780931|r 6 NKEYFKTISTVFGKLGDMRAQNIFLKD 32 (56) Q Consensus 6 nkeyfktistvfgklgdmraqniflkd 32 (56) +.|..-.|.+.++|+|+.|..|-.|+. T Consensus 119 ~~~~llkia~A~kkig~~re~nell~~ 145 (161) T d1wy6a1 119 SASILVAIANALRRVGDERDATTLLIE 145 (161) T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 879999999999885224448999999 No 10 >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Probab=4.35 E-value=1.2e+02 Score=11.52 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=0.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 76549999999999975420233424553205322899999999999999864 Q gi|254780931|r 3 YPCNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIFYLHILIAFEKVIDYL 55 (56) Q Consensus 3 ypcnkeyfktistvfgklgdmraqniflkdikdkdiifylhiliafekvidyl 55 (56) +||+|-..-.-|..|-.+-.-..+.+-+.++. --+|+.+++|+ T Consensus 40 ~~aHk~vLaa~S~~F~~lf~~~~~~i~~~~v~----------~~~f~~ll~~~ 82 (121) T d1buoa_ 40 FHAHRTVLACTSKMFEILFHRNSQHYTLDFLS----------PKTFQQILEYA 82 (121) T ss_dssp EEECHHHHHHHCHHHHHHTTSCCSEEEECSSC----------HHHHHHHHHHH T ss_pred EEEEHHHHCCCCHHHHHHCCCCCCEEECCCCC----------HHHHHHHHHHE T ss_conf 99887784025722233145765145327789----------79999997741 Done!