RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780931|ref|YP_003065344.1| hypothetical protein
CLIBASIA_04150 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)



>gnl|CDD|118092 pfam09556, RE_HaeIII, HaeIII restriction endonuclease.  This family
           includes the HaeIII (recognizes and cleaves GG^CC)
           restriction endonuclease.
          Length = 300

 Score = 33.7 bits (77), Expect = 0.013
 Identities = 12/45 (26%), Positives = 27/45 (60%)

Query: 4   PCNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIFYLHILIAF 48
           P ++ YF  I+ +F +L +++ +    ++I +K+   Y+ +L AF
Sbjct: 134 PSSQNYFDEINPLFEELEELKKEGELWRNISNKEERIYVPLLKAF 178


>gnl|CDD|178764 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7;
           Provisional.
          Length = 566

 Score = 24.8 bits (54), Expect = 5.3
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 11  KTISTVFGK----LGDMRAQNIFLKDIKDKDIIF 40
           K I T+  +    L  + +  I  +D+K ++IIF
Sbjct: 255 KIIQTIMRQILFALDGLHSTGIVHRDVKPQNIIF 288


>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter.  NSTs generally appear
           to function by antiport mechanisms, exchanging a
           nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid
           is exchanged for CMP; GDP-mannose is preferentially
           exchanged for GMP, and UDP-galactose and
           UDP-N-acetylglucosamine are exchanged for UMP (or
           possibly UDP). Other nucleotide sugars (e.g.,
           GDP-fucose, UDP-xylose, UDP-glucose,
           UDP-N-acetylgalactosamine, etc.) may also be transported
           in exchange for various nucleotides, but their
           transporters have not been molecularly characterized.
           Each compound appears to be translocated by its own
           transport protein. Transport allows the compound,
           synthesized in the cytoplasm, to be exported to the
           lumen of the Golgi apparatus or the endoplasmic
           reticulum where it is used for the synthesis of
           glycoproteins and glycolipids.
          Length = 222

 Score = 24.2 bits (53), Expect = 8.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 28  IFLKDIKDKDIIFYLHIL 45
            F K +KD D +F+   L
Sbjct: 103 YFEKILKDGDTMFWSRNL 120


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.331    0.150    0.447 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 932,082
Number of extensions: 43063
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 8
Length of query: 56
Length of database: 5,994,473
Length adjustment: 28
Effective length of query: 28
Effective length of database: 5,389,449
Effective search space: 150904572
Effective search space used: 150904572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.1 bits)