BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780931|ref|YP_003065344.1| hypothetical protein
CLIBASIA_04150 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780931|ref|YP_003065344.1| hypothetical protein CLIBASIA_04150 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 56

 Score =  114 bits (284), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 1  MDYPCNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIFYLHILIAFEKVIDYLL 56
          MDYPCNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIFYLHILIAFEKVIDYLL
Sbjct: 1  MDYPCNKEYFKTISTVFGKLGDMRAQNIFLKDIKDKDIIFYLHILIAFEKVIDYLL 56


>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
           subunits [Candidatus Liberibacter asiaticus str. psy62]
          Length = 528

 Score = 21.6 bits (44), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 30  LKDIKDKDIIFYLHILIAFEK 50
           L  I+D D++F LH  +  EK
Sbjct: 485 LSAIQDADMVFVLHDQVIVEK 505


>gi|254781017|ref|YP_003065430.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 324

 Score = 20.4 bits (41), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 1   MDYPCNKEYFKTISTVFGKLGDMRAQNIFLKDIK 34
           ++YP   E  + I  + GKL  +  Q +  K++K
Sbjct: 201 IEYPEINEINQKIYALMGKLSQISCQALRNKNLK 234


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.331    0.150    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,298
Number of Sequences: 1233
Number of extensions: 1171
Number of successful extensions: 3
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 56
length of database: 328,796
effective HSP length: 28
effective length of query: 28
effective length of database: 294,272
effective search space:  8239616
effective search space used:  8239616
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 31 (16.5 bits)