Query gi|254780932|ref|YP_003065345.1| hypothetical protein CLIBASIA_04155 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 236 No_of_seqs 221 out of 390 Neff 9.6 Searched_HMMs 13730 Date Wed Jun 1 10:58:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780932.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1p0ka_ c.1.4.1 (A:) Isopenten 60.6 2 0.00014 20.9 1.9 46 174-219 274-328 (329) 2 d1ei1a1 d.14.1.3 (A:221-392) D 56.2 6 0.00044 17.5 5.0 34 192-226 123-156 (172) 3 d1s16a1 d.14.1.3 (A:1217-1383) 55.4 6.2 0.00045 17.4 5.3 35 192-227 124-158 (167) 4 d1au7a2 a.35.1.1 (A:5-76) Pit- 47.5 3.6 0.00026 19.1 1.5 40 171-212 22-69 (72) 5 d1e3oc2 a.35.1.1 (C:1-75) Oct- 45.7 4 0.00029 18.8 1.5 41 170-212 25-73 (75) 6 d1h8ba_ a.39.1.7 (A:) alpha-Ac 45.0 8.9 0.00065 16.3 4.0 44 169-216 4-47 (73) 7 d2ewca1 d.79.1.1 (A:3-122) Hyp 44.4 5 0.00037 18.1 1.8 49 167-216 32-91 (120) 8 d2ckca1 d.76.2.1 (A:2563-2622) 34.8 5.8 0.00042 17.6 0.9 20 186-214 18-37 (60) 9 d1mtyb_ a.25.1.2 (B:) Methane 29.6 9 0.00065 16.3 1.2 28 193-220 289-326 (384) 10 d2hkua2 a.121.1.1 (A:88-208) P 29.6 15 0.0011 14.7 5.8 57 175-231 3-63 (121) 11 d2v0fa1 d.76.2.1 (A:2629-2715) 29.3 8.1 0.00059 16.6 0.9 20 186-214 30-49 (87) 12 d2ckaa1 d.76.2.1 (A:2028-2085) 29.3 8.1 0.00059 16.6 0.9 20 186-214 20-39 (58) 13 d1nu0a_ c.55.3.8 (A:) Hypothet 28.0 10 0.00073 16.0 1.2 18 193-213 120-137 (138) 14 d1o1xa_ c.121.1.1 (A:) Putativ 27.5 15 0.0011 14.6 2.1 59 163-229 84-142 (145) 15 d2d9ia1 d.68.8.1 (A:8-90) Nedd 27.3 12 0.0009 15.3 1.6 24 188-213 43-66 (83) 16 d1p94a_ a.43.1.3 (A:) Plasmid 24.2 19 0.0014 14.0 2.1 21 189-213 55-75 (76) 17 d1q1va_ a.159.4.1 (A:) DEK C-t 22.1 21 0.0015 13.8 3.1 20 8-27 10-29 (70) 18 d2pbea1 a.160.1.5 (A:138-282) 21.2 21 0.0015 13.7 1.8 16 193-209 44-59 (145) 19 d1fj2a_ c.69.1.14 (A:) Acyl pr 21.0 14 0.001 14.9 0.9 18 199-217 212-229 (229) 20 d1kija1 d.14.1.3 (A:221-392) D 20.7 22 0.0016 13.6 4.3 38 193-230 124-164 (172) 21 d2nxpa1 d.379.1.1 (A:195-343) 20.0 21 0.0015 13.7 1.6 10 206-215 27-36 (149) No 1 >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Probab=60.58 E-value=2 Score=20.91 Aligned_cols=46 Identities=13% Similarity=0.246 Sum_probs=30.0 Q ss_pred HHHHHHH----HHHHHHCCCCCCCHHHHHHHH--HHHHHHHHHHH---HCHHHHH Q ss_conf 9998765----555653265653078999997--37999997661---0357899 Q gi|254780932|r 174 QVASSFD----QLVKALRESESRSLDQLSLDV--LRPMLREWLDD---NLPGIVE 219 (236) Q Consensus 174 ~v~~~~~----~l~~~~~~~~~~tle~lv~em--LrPmLk~WLD~---nLP~lVE 219 (236) .|.+.|. +|..++..-+.++|.+|-+.. +++-|++||++ |+|.--+ T Consensus 274 gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~lv~~~~~~~~~~~~~~~~~~~~~ 328 (329) T d1p0ka_ 274 GLLEEIQLILEELKLIMTVLGARTIADLQKAPLVIKGETHHWLTERGVNTSSYSV 328 (329) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCBHHHHTTCCEEECHHHHHHHHHTTCCSHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEECCCHHHHHHHCCCCHHHCCC T ss_conf 9999999999999999998689989994868788563278999971899475128 No 2 >d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]} Probab=56.24 E-value=6 Score=17.53 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=25.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH Q ss_conf 30789999973799999766103578999999999 Q gi|254780932|r 192 RSLDQLSLDVLRPMLREWLDDNLPGIVERLVREEI 226 (236) Q Consensus 192 ~tle~lv~emLrPmLk~WLD~nLP~lVErlVr~EI 226 (236) ..+..+|..+++--|..||++| |.+.++|+.+=| T Consensus 123 ~~v~~~v~~~v~~~l~~~l~~n-p~~a~~I~~k~~ 156 (172) T d1ei1a1 123 SEVKSAVEQQMNELLAEYLLEN-PTDAKIVVGKII 156 (172) T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHH T ss_conf 5556577688999999999989-899999999999 No 3 >d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Probab=55.36 E-value=6.2 Score=17.43 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=26.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH Q ss_conf 307899999737999997661035789999999999 Q gi|254780932|r 192 RSLDQLSLDVLRPMLREWLDDNLPGIVERLVREEIE 227 (236) Q Consensus 192 ~tle~lv~emLrPmLk~WLD~nLP~lVErlVr~EIe 227 (236) .-+..+|..+++=-|..||+.| |...+.|+.+=|. T Consensus 124 ~~v~~~V~~~v~~~l~~~l~~n-p~~a~~i~~k~i~ 158 (167) T d1s16a1 124 RQCAAFVSGVVKDAFILWLNQN-VQAAELLAEMAIS 158 (167) T ss_dssp THHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHH T ss_conf 7788889999999999999989-8999999999999 No 4 >d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=47.54 E-value=3.6 Score=19.09 Aligned_cols=40 Identities=15% Similarity=0.328 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHHHHHCCCC--------CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67899987655556532656--------5307899999737999997661 Q gi|254780932|r 171 VGDQVASSFDQLVKALRESE--------SRSLDQLSLDVLRPMLREWLDD 212 (236) Q Consensus 171 t~~~v~~~~~~l~~~~~~~~--------~~tle~lv~emLrPmLk~WLD~ 212 (236) |...|..+++.|-....++. ..|+-.+. =|||.|+.||.+ T Consensus 22 TQ~dVG~al~~l~g~~~SQttIcRFE~l~LS~kn~~--klkPiL~~WL~e 69 (72) T d1au7a2 22 TQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNAC--KLKAILSKWLEE 69 (72) T ss_dssp CHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHH--HHHHHHHHHHHH T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHH T ss_conf 299999999986186555037788885154798899--889999999988 No 5 >d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=45.70 E-value=4 Score=18.77 Aligned_cols=41 Identities=24% Similarity=0.419 Sum_probs=21.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCC--------CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 567899987655556532656--------5307899999737999997661 Q gi|254780932|r 170 DVGDQVASSFDQLVKALRESE--------SRSLDQLSLDVLRPMLREWLDD 212 (236) Q Consensus 170 ~t~~~v~~~~~~l~~~~~~~~--------~~tle~lv~emLrPmLk~WLD~ 212 (236) =|...|..+++.|-....++. ..|+-.+. =|||.|+.||.+ T Consensus 25 ~TQ~dVG~al~~l~g~~~SQttIcRFE~l~LS~kn~~--kLkP~L~~WL~e 73 (75) T d1e3oc2 25 FTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMS--KLKPLLEKWLND 73 (75) T ss_dssp CCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHH--HHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHHH T ss_conf 5589999999987175025889999997245798899--889999999874 No 6 >d1h8ba_ a.39.1.7 (A:) alpha-Actinin {Human (Homo sapiens) [TaxId: 9606]} Probab=44.96 E-value=8.9 Score=16.34 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=35.6 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHH Q ss_conf 556789998765555653265653078999997379999976610357 Q gi|254780932|r 169 SDVGDQVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPG 216 (236) Q Consensus 169 ~~t~~~v~~~~~~l~~~~~~~~~~tle~lv~emLrPmLk~WLD~nLP~ 216 (236) .++.++|..+|..|+ .+..-.|-++|-++ |.|-.-+.|=.|+|. T Consensus 4 ~~TaEqv~~aFr~lA---~~KpyVT~~dL~~~-L~peqaeyc~~~M~~ 47 (73) T d1h8ba_ 4 TDTAEQVIASFRILA---SDKPYILAEELRRE-LPPDQAQYCIKRMPA 47 (73) T ss_dssp CSTHHHHHHHHHHHT---TSCSSBCHHHHHHH-SCHHHHHHHHHHSCS T ss_pred CCCHHHHHHHHHHHH---CCCCEECHHHHHHH-CCHHHHHHHHHHCCC T ss_conf 344999999999996---89982079999966-699999999997846 No 7 >d2ewca1 d.79.1.1 (A:3-122) Hypothetical protein SPy2060 {Streptococcus pyogenes [TaxId: 1314]} Probab=44.45 E-value=5 Score=18.08 Aligned_cols=49 Identities=24% Similarity=0.519 Sum_probs=37.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH-----------HHHHHHHHHHHHHHHCHH Q ss_conf 23556789998765555653265653078999-----------997379999976610357 Q gi|254780932|r 167 VSSDVGDQVASSFDQLVKALRESESRSLDQLS-----------LDVLRPMLREWLDDNLPG 216 (236) Q Consensus 167 ~S~~t~~~v~~~~~~l~~~~~~~~~~tle~lv-----------~emLrPmLk~WLD~nLP~ 216 (236) +..+...|+..+|++|...+... +-+++|+| ...+....++|+.+|.|. T Consensus 32 v~~~~~~Q~~~a~~ni~~iL~~a-G~~~~dVvkvtvyltd~~~~~~~~~v~~~~f~~~~PA 91 (120) T d2ewca1 32 VGQDIESQINGAFDEMERRLALV-GLTLDAVVQMDCLFRDVWNIPVMEKMIKERFNGRYPA 91 (120) T ss_dssp TTSCHHHHHHHHHHHHHHHHHTT-TCCGGGEEEEEEEESSGGGHHHHHHHHHHHSTTCCCE T ss_pred CCCCHHHHHHHHHHHHHHHHHHC-CCCHHHHEEEEEEECCHHHHHHHHHHHHHHCCCCCCC T ss_conf 58987999999999999999964-5787773042346444889999999999882987775 No 8 >d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]} Probab=34.79 E-value=5.8 Score=17.64 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=14.2 Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 32656530789999973799999766103 Q gi|254780932|r 186 LRESESRSLDQLSLDVLRPMLREWLDDNL 214 (236) Q Consensus 186 ~~~~~~~tle~lv~emLrPmLk~WLD~nL 214 (236) +.|..+.++.+ |.+||+.|= T Consensus 18 L~G~~AP~~~~---------L~~WL~~hP 37 (60) T d2ckca1 18 LVGEDAPKNKD---------LVEWLKLHP 37 (60) T ss_dssp ECTTSSCBHHH---------HHHHHHHCT T ss_pred ECCCCCCCHHH---------HHHHHHHCC T ss_conf 04767867779---------999999898 No 9 >d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]} Probab=29.61 E-value=9 Score=16.31 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=20.2 Q ss_pred CHHHHHHHHH----------HHHHHHHHHHHCHHHHHH Q ss_conf 0789999973----------799999766103578999 Q gi|254780932|r 193 SLDQLSLDVL----------RPMLREWLDDNLPGIVER 220 (236) Q Consensus 193 tle~lv~emL----------rPmLk~WLD~nLP~lVEr 220 (236) -..+||+-|| |+.|+.|||..+|.-++- T Consensus 289 ~~~alvk~~l~~dpe~~~~Nr~llq~Wi~~W~~~a~~A 326 (384) T d1mtyb_ 289 GVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWLEPTIAA 326 (384) T ss_dssp HHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999984585332668999999999999999999 No 10 >d2hkua2 a.121.1.1 (A:88-208) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=29.60 E-value=15 Score=14.69 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=42.7 Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHH----HHHHHHHHHHHCHHHHHHHHHHHHHHHHC Q ss_conf 9987655556532656530789999973----79999976610357899999999999960 Q gi|254780932|r 175 VASSFDQLVKALRESESRSLDQLSLDVL----RPMLREWLDDNLPGIVERLVREEIERIAR 231 (236) Q Consensus 175 v~~~~~~l~~~~~~~~~~tle~lv~emL----rPmLk~WLD~nLP~lVErlVr~EIerv~r 231 (236) |..+-..|..++.|.++++++=.++-|+ ||-|..-++.+|-.|-.+=-|.=+.-|.| T Consensus 3 v~dyt~~l~~sl~g~~apSv~lfa~Am~~~~rrpeLa~li~~tL~~Lh~~geral~~~i~R 63 (121) T d2hkua2 3 VGDYTEKLVGSLLGPGAPSVELFTSAMLMTGRRSELRDLITDTLRTLHSSGEVALIRTLMR 63 (121) T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHTHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7889999999862568972899999999805770178899999999999688999999998 No 11 >d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]} Probab=29.34 E-value=8.1 Score=16.62 Aligned_cols=20 Identities=20% Similarity=0.559 Sum_probs=13.4 Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 32656530789999973799999766103 Q gi|254780932|r 186 LRESESRSLDQLSLDVLRPMLREWLDDNL 214 (236) Q Consensus 186 ~~~~~~~tle~lv~emLrPmLk~WLD~nL 214 (236) +.|..+.++.+ |.+||+.|= T Consensus 30 L~G~~AP~~~~---------L~~WL~~nP 49 (87) T d2v0fa1 30 MGGAMAPPMKD---------LPRWLEENP 49 (87) T ss_dssp ECSSSSCBGGG---------HHHHHHHCT T ss_pred CCCCCCCCHHH---------HHHHHHHCC T ss_conf 44555822778---------999999888 No 12 >d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]} Probab=29.33 E-value=8.1 Score=16.62 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=14.4 Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 32656530789999973799999766103 Q gi|254780932|r 186 LRESESRSLDQLSLDVLRPMLREWLDDNL 214 (236) Q Consensus 186 ~~~~~~~tle~lv~emLrPmLk~WLD~nL 214 (236) +.|..+.++.+ |..||+.|= T Consensus 20 L~G~~AP~~~~---------L~~WL~~nP 39 (58) T d2ckaa1 20 LVGEDAPRRAE---------LEMWLQGHP 39 (58) T ss_dssp ECTTSSCBHHH---------HHHHHHHCT T ss_pred CCCCCCCCHHH---------HHHHHHHCC T ss_conf 35567967779---------999999888 No 13 >d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]} Probab=27.97 E-value=10 Score=15.96 Aligned_cols=18 Identities=17% Similarity=0.460 Sum_probs=14.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHH Q ss_conf 078999997379999976610 Q gi|254780932|r 193 SLDQLSLDVLRPMLREWLDDN 213 (236) Q Consensus 193 tle~lv~emLrPmLk~WLD~n 213 (236) -+|.++..+ +|+.|||+| T Consensus 120 ~iD~~AA~l---ILq~~L~~~ 137 (138) T d1nu0a_ 120 KVDSASAVI---ILESYMEQG 137 (138) T ss_dssp HHTTHHHHH---HHHHHHHTT T ss_pred CHHHHHHHH---HHHHHHHCC T ss_conf 465999999---999999736 No 14 >d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]} Probab=27.54 E-value=15 Score=14.63 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=34.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH Q ss_conf 2112235567899987655556532656530789999973799999766103578999999999999 Q gi|254780932|r 163 EEALVSSDVGDQVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPGIVERLVREEIERI 229 (236) Q Consensus 163 ~~~l~S~~t~~~v~~~~~~l~~~~~~~~~~tle~lv~emLrPmLk~WLD~nLP~lVErlVr~EIerv 229 (236) ..+++........++..++-.-..+|..-.+. +++.+ |++.||+...-. +|-.|+ |++| T Consensus 84 RAa~~~d~~~A~~ar~hNnaNvL~lGa~~~~~-~~a~~----iv~~~l~t~F~g--gRh~~R-v~ki 142 (145) T d1o1xa_ 84 RAALCLFPDMARLARSHNNANILVLPGRLIGA-ELAFW----IVDTFLSTPFDG--GRHERR-IRKI 142 (145) T ss_dssp CEEECSSHHHHHHHHHTTCCSEEEEETTTSCH-HHHHH----HHHHHHHCCCCC--TTHHHH-HHHH T ss_pred EEEEECCHHHHHHHHHHCCCEEEEECCEECCH-HHHHH----HHHHHHCCCCCC--CCHHHH-HHHH T ss_conf 55421278999999985696189775575188-99999----999997799898--738999-9999 No 15 >d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Probab=27.32 E-value=12 Score=15.33 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=15.3 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 65653078999997379999976610 Q gi|254780932|r 188 ESESRSLDQLSLDVLRPMLREWLDDN 213 (236) Q Consensus 188 ~~~~~tle~lv~emLrPmLk~WLD~n 213 (236) |.+..+..+ ...||++++.||+++ T Consensus 43 G~G~hS~~g--~~~lk~~V~~~L~~~ 66 (83) T d2d9ia1 43 GRGNHSQGG--VARIKPAVIKYLISH 66 (83) T ss_dssp CCSGGGTTC--TTCHHHHHHHHHHHT T ss_pred CCCCCCCCC--CCHHHHHHHHHHHHC T ss_conf 987778999--642799999999977 No 16 >d1p94a_ a.43.1.3 (A:) Plasmid partition protein ParG {Salmonella enterica [TaxId: 28901]} Probab=24.17 E-value=19 Score=14.04 Aligned_cols=21 Identities=19% Similarity=0.560 Sum_probs=16.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 5653078999997379999976610 Q gi|254780932|r 189 SESRSLDQLSLDVLRPMLREWLDDN 213 (236) Q Consensus 189 ~~~~tle~lv~emLrPmLk~WLD~n 213 (236) .+++++-|++.++ +-.||.+| T Consensus 55 k~gtsitdVi~~L----vd~WL~EN 75 (76) T d1p94a_ 55 RKGTSITDVVNQL----VDNWLKEN 75 (76) T ss_dssp HHTCCHHHHHHHH----HHHHHHHC T ss_pred HCCCCHHHHHHHH----HHHHHHCC T ss_conf 8598599999999----99988626 No 17 >d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=22.09 E-value=21 Score=13.76 Aligned_cols=20 Identities=25% Similarity=0.591 Sum_probs=14.0 Q ss_pred CCCCHHHHHHHHHHHHCCCC Q ss_conf 68879999986767620467 Q gi|254780932|r 8 SEPSMEEIVNSIRRILENND 27 (236) Q Consensus 8 ~EPSMeeILASIRRIIsdde 27 (236) .+||=++|.+-||.|+...| T Consensus 10 ~~ptd~ei~~~i~~IL~~aD 29 (70) T d1q1va_ 10 KPPTDEELKETIKKLLASAN 29 (70) T ss_dssp CCCCHHHHHHHHHHHHTTSC T ss_pred CCCCHHHHHHHHHHHHHHCC T ss_conf 89899999999999998478 No 18 >d2pbea1 a.160.1.5 (A:138-282) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]} Probab=21.23 E-value=21 Score=13.66 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=12.5 Q ss_pred CHHHHHHHHHHHHHHHH Q ss_conf 07899999737999997 Q gi|254780932|r 193 SLDQLSLDVLRPMLREW 209 (236) Q Consensus 193 tle~lv~emLrPmLk~W 209 (236) -+++++|++|--|| +| T Consensus 44 ~~~~~~R~~Ll~ml-~W 59 (145) T d2pbea1 44 HLNEIVRPNLLRMM-AW 59 (145) T ss_dssp HHHHTHHHHHHHHH-HH T ss_pred HHHHHHHHHHHHHH-HH T ss_conf 99999999999999-99 No 19 >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} Probab=20.96 E-value=14 Score=14.90 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=12.1 Q ss_pred HHHHHHHHHHHHHHHCHHH Q ss_conf 9973799999766103578 Q gi|254780932|r 199 LDVLRPMLREWLDDNLPGI 217 (236) Q Consensus 199 ~emLrPmLk~WLD~nLP~l 217 (236) .++++ .+++||+++||-| T Consensus 212 ~~~~~-~~~~wL~~~Lp~~ 229 (229) T d1fj2a_ 212 QQEMM-DVKQFIDKLLPPI 229 (229) T ss_dssp HHHHH-HHHHHHHHHSCCC T ss_pred HHHHH-HHHHHHHHHCCCC T ss_conf 99999-9999999678699 No 20 >d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Probab=20.68 E-value=22 Score=13.57 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=24.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHH Q ss_conf 0789999973799999766103---5789999999999996 Q gi|254780932|r 193 SLDQLSLDVLRPMLREWLDDNL---PGIVERLVREEIERIA 230 (236) Q Consensus 193 tle~lv~emLrPmLk~WLD~nL---P~lVErlVr~EIerv~ 230 (236) -+-.+|..+++--|..||+.|- =.|+++.++.-=.|.+ T Consensus 124 ev~~~v~~~v~~~l~~~L~~np~~a~~I~~k~~~~~~aR~~ 164 (172) T d1kija1 124 EAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREA 164 (172) T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH T ss_conf 31006777799999999998989999999999998999999 No 21 >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} Probab=20.01 E-value=21 Score=13.72 Aligned_cols=10 Identities=20% Similarity=0.574 Sum_probs=5.7 Q ss_pred HHHHHHHHCH Q ss_conf 9997661035 Q gi|254780932|r 206 LREWLDDNLP 215 (236) Q Consensus 206 Lk~WLD~nLP 215 (236) ||.|.+++|- T Consensus 27 Lr~wv~~sld 36 (149) T d2nxpa1 27 LKHFIECSLD 36 (149) T ss_dssp HHHHHHTSCH T ss_pred HHHHHHHCCH T ss_conf 9999996968 Done!