Query         gi|254780932|ref|YP_003065345.1| hypothetical protein CLIBASIA_04155 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 236
No_of_seqs    221 out of 390
Neff          9.6 
Searched_HMMs 13730
Date          Wed Jun  1 10:58:32 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780932.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1p0ka_ c.1.4.1 (A:) Isopenten  60.6       2 0.00014   20.9   1.9   46  174-219   274-328 (329)
  2 d1ei1a1 d.14.1.3 (A:221-392) D  56.2       6 0.00044   17.5   5.0   34  192-226   123-156 (172)
  3 d1s16a1 d.14.1.3 (A:1217-1383)  55.4     6.2 0.00045   17.4   5.3   35  192-227   124-158 (167)
  4 d1au7a2 a.35.1.1 (A:5-76) Pit-  47.5     3.6 0.00026   19.1   1.5   40  171-212    22-69  (72)
  5 d1e3oc2 a.35.1.1 (C:1-75) Oct-  45.7       4 0.00029   18.8   1.5   41  170-212    25-73  (75)
  6 d1h8ba_ a.39.1.7 (A:) alpha-Ac  45.0     8.9 0.00065   16.3   4.0   44  169-216     4-47  (73)
  7 d2ewca1 d.79.1.1 (A:3-122) Hyp  44.4       5 0.00037   18.1   1.8   49  167-216    32-91  (120)
  8 d2ckca1 d.76.2.1 (A:2563-2622)  34.8     5.8 0.00042   17.6   0.9   20  186-214    18-37  (60)
  9 d1mtyb_ a.25.1.2 (B:) Methane   29.6       9 0.00065   16.3   1.2   28  193-220   289-326 (384)
 10 d2hkua2 a.121.1.1 (A:88-208) P  29.6      15  0.0011   14.7   5.8   57  175-231     3-63  (121)
 11 d2v0fa1 d.76.2.1 (A:2629-2715)  29.3     8.1 0.00059   16.6   0.9   20  186-214    30-49  (87)
 12 d2ckaa1 d.76.2.1 (A:2028-2085)  29.3     8.1 0.00059   16.6   0.9   20  186-214    20-39  (58)
 13 d1nu0a_ c.55.3.8 (A:) Hypothet  28.0      10 0.00073   16.0   1.2   18  193-213   120-137 (138)
 14 d1o1xa_ c.121.1.1 (A:) Putativ  27.5      15  0.0011   14.6   2.1   59  163-229    84-142 (145)
 15 d2d9ia1 d.68.8.1 (A:8-90) Nedd  27.3      12  0.0009   15.3   1.6   24  188-213    43-66  (83)
 16 d1p94a_ a.43.1.3 (A:) Plasmid   24.2      19  0.0014   14.0   2.1   21  189-213    55-75  (76)
 17 d1q1va_ a.159.4.1 (A:) DEK C-t  22.1      21  0.0015   13.8   3.1   20    8-27     10-29  (70)
 18 d2pbea1 a.160.1.5 (A:138-282)   21.2      21  0.0015   13.7   1.8   16  193-209    44-59  (145)
 19 d1fj2a_ c.69.1.14 (A:) Acyl pr  21.0      14   0.001   14.9   0.9   18  199-217   212-229 (229)
 20 d1kija1 d.14.1.3 (A:221-392) D  20.7      22  0.0016   13.6   4.3   38  193-230   124-164 (172)
 21 d2nxpa1 d.379.1.1 (A:195-343)   20.0      21  0.0015   13.7   1.6   10  206-215    27-36  (149)

No 1  
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}
Probab=60.58  E-value=2  Score=20.91  Aligned_cols=46  Identities=13%  Similarity=0.246  Sum_probs=30.0

Q ss_pred             HHHHHHH----HHHHHHCCCCCCCHHHHHHHH--HHHHHHHHHHH---HCHHHHH
Q ss_conf             9998765----555653265653078999997--37999997661---0357899
Q gi|254780932|r  174 QVASSFD----QLVKALRESESRSLDQLSLDV--LRPMLREWLDD---NLPGIVE  219 (236)
Q Consensus       174 ~v~~~~~----~l~~~~~~~~~~tle~lv~em--LrPmLk~WLD~---nLP~lVE  219 (236)
                      .|.+.|.    +|..++..-+.++|.+|-+..  +++-|++||++   |+|.--+
T Consensus       274 gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~lv~~~~~~~~~~~~~~~~~~~~~  328 (329)
T d1p0ka_         274 GLLEEIQLILEELKLIMTVLGARTIADLQKAPLVIKGETHHWLTERGVNTSSYSV  328 (329)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCBHHHHTTCCEEECHHHHHHHHHTTCCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEECCCHHHHHHHCCCCHHHCCC
T ss_conf             9999999999999999998689989994868788563278999971899475128


No 2  
>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]}
Probab=56.24  E-value=6  Score=17.53  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=25.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf             30789999973799999766103578999999999
Q gi|254780932|r  192 RSLDQLSLDVLRPMLREWLDDNLPGIVERLVREEI  226 (236)
Q Consensus       192 ~tle~lv~emLrPmLk~WLD~nLP~lVErlVr~EI  226 (236)
                      ..+..+|..+++--|..||++| |.+.++|+.+=|
T Consensus       123 ~~v~~~v~~~v~~~l~~~l~~n-p~~a~~I~~k~~  156 (172)
T d1ei1a1         123 SEVKSAVEQQMNELLAEYLLEN-PTDAKIVVGKII  156 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHH
T ss_conf             5556577688999999999989-899999999999


No 3  
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=55.36  E-value=6.2  Score=17.43  Aligned_cols=35  Identities=23%  Similarity=0.334  Sum_probs=26.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf             307899999737999997661035789999999999
Q gi|254780932|r  192 RSLDQLSLDVLRPMLREWLDDNLPGIVERLVREEIE  227 (236)
Q Consensus       192 ~tle~lv~emLrPmLk~WLD~nLP~lVErlVr~EIe  227 (236)
                      .-+..+|..+++=-|..||+.| |...+.|+.+=|.
T Consensus       124 ~~v~~~V~~~v~~~l~~~l~~n-p~~a~~i~~k~i~  158 (167)
T d1s16a1         124 RQCAAFVSGVVKDAFILWLNQN-VQAAELLAEMAIS  158 (167)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHH
T ss_conf             7788889999999999999989-8999999999999


No 4  
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=47.54  E-value=3.6  Score=19.09  Aligned_cols=40  Identities=15%  Similarity=0.328  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCC--------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67899987655556532656--------5307899999737999997661
Q gi|254780932|r  171 VGDQVASSFDQLVKALRESE--------SRSLDQLSLDVLRPMLREWLDD  212 (236)
Q Consensus       171 t~~~v~~~~~~l~~~~~~~~--------~~tle~lv~emLrPmLk~WLD~  212 (236)
                      |...|..+++.|-....++.        ..|+-.+.  =|||.|+.||.+
T Consensus        22 TQ~dVG~al~~l~g~~~SQttIcRFE~l~LS~kn~~--klkPiL~~WL~e   69 (72)
T d1au7a2          22 TQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNAC--KLKAILSKWLEE   69 (72)
T ss_dssp             CHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHH--HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHH
T ss_conf             299999999986186555037788885154798899--889999999988


No 5  
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.70  E-value=4  Score=18.77  Aligned_cols=41  Identities=24%  Similarity=0.419  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCCC--------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             567899987655556532656--------5307899999737999997661
Q gi|254780932|r  170 DVGDQVASSFDQLVKALRESE--------SRSLDQLSLDVLRPMLREWLDD  212 (236)
Q Consensus       170 ~t~~~v~~~~~~l~~~~~~~~--------~~tle~lv~emLrPmLk~WLD~  212 (236)
                      =|...|..+++.|-....++.        ..|+-.+.  =|||.|+.||.+
T Consensus        25 ~TQ~dVG~al~~l~g~~~SQttIcRFE~l~LS~kn~~--kLkP~L~~WL~e   73 (75)
T d1e3oc2          25 FTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMS--KLKPLLEKWLND   73 (75)
T ss_dssp             CCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHH--HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHHH
T ss_conf             5589999999987175025889999997245798899--889999999874


No 6  
>d1h8ba_ a.39.1.7 (A:) alpha-Actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.96  E-value=8.9  Score=16.34  Aligned_cols=44  Identities=23%  Similarity=0.363  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf             556789998765555653265653078999997379999976610357
Q gi|254780932|r  169 SDVGDQVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPG  216 (236)
Q Consensus       169 ~~t~~~v~~~~~~l~~~~~~~~~~tle~lv~emLrPmLk~WLD~nLP~  216 (236)
                      .++.++|..+|..|+   .+..-.|-++|-++ |.|-.-+.|=.|+|.
T Consensus         4 ~~TaEqv~~aFr~lA---~~KpyVT~~dL~~~-L~peqaeyc~~~M~~   47 (73)
T d1h8ba_           4 TDTAEQVIASFRILA---SDKPYILAEELRRE-LPPDQAQYCIKRMPA   47 (73)
T ss_dssp             CSTHHHHHHHHHHHT---TSCSSBCHHHHHHH-SCHHHHHHHHHHSCS
T ss_pred             CCCHHHHHHHHHHHH---CCCCEECHHHHHHH-CCHHHHHHHHHHCCC
T ss_conf             344999999999996---89982079999966-699999999997846


No 7  
>d2ewca1 d.79.1.1 (A:3-122) Hypothetical protein SPy2060 {Streptococcus pyogenes [TaxId: 1314]}
Probab=44.45  E-value=5  Score=18.08  Aligned_cols=49  Identities=24%  Similarity=0.519  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH-----------HHHHHHHHHHHHHHHCHH
Q ss_conf             23556789998765555653265653078999-----------997379999976610357
Q gi|254780932|r  167 VSSDVGDQVASSFDQLVKALRESESRSLDQLS-----------LDVLRPMLREWLDDNLPG  216 (236)
Q Consensus       167 ~S~~t~~~v~~~~~~l~~~~~~~~~~tle~lv-----------~emLrPmLk~WLD~nLP~  216 (236)
                      +..+...|+..+|++|...+... +-+++|+|           ...+....++|+.+|.|.
T Consensus        32 v~~~~~~Q~~~a~~ni~~iL~~a-G~~~~dVvkvtvyltd~~~~~~~~~v~~~~f~~~~PA   91 (120)
T d2ewca1          32 VGQDIESQINGAFDEMERRLALV-GLTLDAVVQMDCLFRDVWNIPVMEKMIKERFNGRYPA   91 (120)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTT-TCCGGGEEEEEEEESSGGGHHHHHHHHHHHSTTCCCE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHC-CCCHHHHEEEEEEECCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             58987999999999999999964-5787773042346444889999999999882987775


No 8  
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.79  E-value=5.8  Score=17.64  Aligned_cols=20  Identities=25%  Similarity=0.368  Sum_probs=14.2

Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32656530789999973799999766103
Q gi|254780932|r  186 LRESESRSLDQLSLDVLRPMLREWLDDNL  214 (236)
Q Consensus       186 ~~~~~~~tle~lv~emLrPmLk~WLD~nL  214 (236)
                      +.|..+.++.+         |.+||+.|=
T Consensus        18 L~G~~AP~~~~---------L~~WL~~hP   37 (60)
T d2ckca1          18 LVGEDAPKNKD---------LVEWLKLHP   37 (60)
T ss_dssp             ECTTSSCBHHH---------HHHHHHHCT
T ss_pred             ECCCCCCCHHH---------HHHHHHHCC
T ss_conf             04767867779---------999999898


No 9  
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]}
Probab=29.61  E-value=9  Score=16.31  Aligned_cols=28  Identities=21%  Similarity=0.487  Sum_probs=20.2

Q ss_pred             CHHHHHHHHH----------HHHHHHHHHHHCHHHHHH
Q ss_conf             0789999973----------799999766103578999
Q gi|254780932|r  193 SLDQLSLDVL----------RPMLREWLDDNLPGIVER  220 (236)
Q Consensus       193 tle~lv~emL----------rPmLk~WLD~nLP~lVEr  220 (236)
                      -..+||+-||          |+.|+.|||..+|.-++-
T Consensus       289 ~~~alvk~~l~~dpe~~~~Nr~llq~Wi~~W~~~a~~A  326 (384)
T d1mtyb_         289 GVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWLEPTIAA  326 (384)
T ss_dssp             HHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999984585332668999999999999999999


No 10 
>d2hkua2 a.121.1.1 (A:88-208) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=29.60  E-value=15  Score=14.69  Aligned_cols=57  Identities=23%  Similarity=0.288  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHH----HHHHHHHHHHHCHHHHHHHHHHHHHHHHC
Q ss_conf             9987655556532656530789999973----79999976610357899999999999960
Q gi|254780932|r  175 VASSFDQLVKALRESESRSLDQLSLDVL----RPMLREWLDDNLPGIVERLVREEIERIAR  231 (236)
Q Consensus       175 v~~~~~~l~~~~~~~~~~tle~lv~emL----rPmLk~WLD~nLP~lVErlVr~EIerv~r  231 (236)
                      |..+-..|..++.|.++++++=.++-|+    ||-|..-++.+|-.|-.+=-|.=+.-|.|
T Consensus         3 v~dyt~~l~~sl~g~~apSv~lfa~Am~~~~rrpeLa~li~~tL~~Lh~~geral~~~i~R   63 (121)
T d2hkua2           3 VGDYTEKLVGSLLGPGAPSVELFTSAMLMTGRRSELRDLITDTLRTLHSSGEVALIRTLMR   63 (121)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7889999999862568972899999999805770178899999999999688999999998


No 11 
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.34  E-value=8.1  Score=16.62  Aligned_cols=20  Identities=20%  Similarity=0.559  Sum_probs=13.4

Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32656530789999973799999766103
Q gi|254780932|r  186 LRESESRSLDQLSLDVLRPMLREWLDDNL  214 (236)
Q Consensus       186 ~~~~~~~tle~lv~emLrPmLk~WLD~nL  214 (236)
                      +.|..+.++.+         |.+||+.|=
T Consensus        30 L~G~~AP~~~~---------L~~WL~~nP   49 (87)
T d2v0fa1          30 MGGAMAPPMKD---------LPRWLEENP   49 (87)
T ss_dssp             ECSSSSCBGGG---------HHHHHHHCT
T ss_pred             CCCCCCCCHHH---------HHHHHHHCC
T ss_conf             44555822778---------999999888


No 12 
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.33  E-value=8.1  Score=16.62  Aligned_cols=20  Identities=20%  Similarity=0.398  Sum_probs=14.4

Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32656530789999973799999766103
Q gi|254780932|r  186 LRESESRSLDQLSLDVLRPMLREWLDDNL  214 (236)
Q Consensus       186 ~~~~~~~tle~lv~emLrPmLk~WLD~nL  214 (236)
                      +.|..+.++.+         |..||+.|=
T Consensus        20 L~G~~AP~~~~---------L~~WL~~nP   39 (58)
T d2ckaa1          20 LVGEDAPRRAE---------LEMWLQGHP   39 (58)
T ss_dssp             ECTTSSCBHHH---------HHHHHHHCT
T ss_pred             CCCCCCCCHHH---------HHHHHHHCC
T ss_conf             35567967779---------999999888


No 13 
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}
Probab=27.97  E-value=10  Score=15.96  Aligned_cols=18  Identities=17%  Similarity=0.460  Sum_probs=14.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             078999997379999976610
Q gi|254780932|r  193 SLDQLSLDVLRPMLREWLDDN  213 (236)
Q Consensus       193 tle~lv~emLrPmLk~WLD~n  213 (236)
                      -+|.++..+   +|+.|||+|
T Consensus       120 ~iD~~AA~l---ILq~~L~~~  137 (138)
T d1nu0a_         120 KVDSASAVI---ILESYMEQG  137 (138)
T ss_dssp             HHTTHHHHH---HHHHHHHTT
T ss_pred             CHHHHHHHH---HHHHHHHCC
T ss_conf             465999999---999999736


No 14 
>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]}
Probab=27.54  E-value=15  Score=14.63  Aligned_cols=59  Identities=19%  Similarity=0.182  Sum_probs=34.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf             2112235567899987655556532656530789999973799999766103578999999999999
Q gi|254780932|r  163 EEALVSSDVGDQVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPGIVERLVREEIERI  229 (236)
Q Consensus       163 ~~~l~S~~t~~~v~~~~~~l~~~~~~~~~~tle~lv~emLrPmLk~WLD~nLP~lVErlVr~EIerv  229 (236)
                      ..+++........++..++-.-..+|..-.+. +++.+    |++.||+...-.  +|-.|+ |++|
T Consensus        84 RAa~~~d~~~A~~ar~hNnaNvL~lGa~~~~~-~~a~~----iv~~~l~t~F~g--gRh~~R-v~ki  142 (145)
T d1o1xa_          84 RAALCLFPDMARLARSHNNANILVLPGRLIGA-ELAFW----IVDTFLSTPFDG--GRHERR-IRKI  142 (145)
T ss_dssp             CEEECSSHHHHHHHHHTTCCSEEEEETTTSCH-HHHHH----HHHHHHHCCCCC--TTHHHH-HHHH
T ss_pred             EEEEECCHHHHHHHHHHCCCEEEEECCEECCH-HHHHH----HHHHHHCCCCCC--CCHHHH-HHHH
T ss_conf             55421278999999985696189775575188-99999----999997799898--738999-9999


No 15 
>d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.32  E-value=12  Score=15.33  Aligned_cols=24  Identities=13%  Similarity=0.250  Sum_probs=15.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             65653078999997379999976610
Q gi|254780932|r  188 ESESRSLDQLSLDVLRPMLREWLDDN  213 (236)
Q Consensus       188 ~~~~~tle~lv~emLrPmLk~WLD~n  213 (236)
                      |.+..+..+  ...||++++.||+++
T Consensus        43 G~G~hS~~g--~~~lk~~V~~~L~~~   66 (83)
T d2d9ia1          43 GRGNHSQGG--VARIKPAVIKYLISH   66 (83)
T ss_dssp             CCSGGGTTC--TTCHHHHHHHHHHHT
T ss_pred             CCCCCCCCC--CCHHHHHHHHHHHHC
T ss_conf             987778999--642799999999977


No 16 
>d1p94a_ a.43.1.3 (A:) Plasmid partition protein ParG {Salmonella enterica [TaxId: 28901]}
Probab=24.17  E-value=19  Score=14.04  Aligned_cols=21  Identities=19%  Similarity=0.560  Sum_probs=16.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5653078999997379999976610
Q gi|254780932|r  189 SESRSLDQLSLDVLRPMLREWLDDN  213 (236)
Q Consensus       189 ~~~~tle~lv~emLrPmLk~WLD~n  213 (236)
                      .+++++-|++.++    +-.||.+|
T Consensus        55 k~gtsitdVi~~L----vd~WL~EN   75 (76)
T d1p94a_          55 RKGTSITDVVNQL----VDNWLKEN   75 (76)
T ss_dssp             HHTCCHHHHHHHH----HHHHHHHC
T ss_pred             HCCCCHHHHHHHH----HHHHHHCC
T ss_conf             8598599999999----99988626


No 17 
>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.09  E-value=21  Score=13.76  Aligned_cols=20  Identities=25%  Similarity=0.591  Sum_probs=14.0

Q ss_pred             CCCCHHHHHHHHHHHHCCCC
Q ss_conf             68879999986767620467
Q gi|254780932|r    8 SEPSMEEIVNSIRRILENND   27 (236)
Q Consensus         8 ~EPSMeeILASIRRIIsdde   27 (236)
                      .+||=++|.+-||.|+...|
T Consensus        10 ~~ptd~ei~~~i~~IL~~aD   29 (70)
T d1q1va_          10 KPPTDEELKETIKKLLASAN   29 (70)
T ss_dssp             CCCCHHHHHHHHHHHHTTSC
T ss_pred             CCCCHHHHHHHHHHHHHHCC
T ss_conf             89899999999999998478


No 18 
>d2pbea1 a.160.1.5 (A:138-282) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]}
Probab=21.23  E-value=21  Score=13.66  Aligned_cols=16  Identities=25%  Similarity=0.555  Sum_probs=12.5

Q ss_pred             CHHHHHHHHHHHHHHHH
Q ss_conf             07899999737999997
Q gi|254780932|r  193 SLDQLSLDVLRPMLREW  209 (236)
Q Consensus       193 tle~lv~emLrPmLk~W  209 (236)
                      -+++++|++|--|| +|
T Consensus        44 ~~~~~~R~~Ll~ml-~W   59 (145)
T d2pbea1          44 HLNEIVRPNLLRMM-AW   59 (145)
T ss_dssp             HHHHTHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHH-HH
T ss_conf             99999999999999-99


No 19 
>d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.96  E-value=14  Score=14.90  Aligned_cols=18  Identities=22%  Similarity=0.451  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHCHHH
Q ss_conf             9973799999766103578
Q gi|254780932|r  199 LDVLRPMLREWLDDNLPGI  217 (236)
Q Consensus       199 ~emLrPmLk~WLD~nLP~l  217 (236)
                      .++++ .+++||+++||-|
T Consensus       212 ~~~~~-~~~~wL~~~Lp~~  229 (229)
T d1fj2a_         212 QQEMM-DVKQFIDKLLPPI  229 (229)
T ss_dssp             HHHHH-HHHHHHHHHSCCC
T ss_pred             HHHHH-HHHHHHHHHCCCC
T ss_conf             99999-9999999678699


No 20 
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=20.68  E-value=22  Score=13.57  Aligned_cols=38  Identities=24%  Similarity=0.222  Sum_probs=24.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHH
Q ss_conf             0789999973799999766103---5789999999999996
Q gi|254780932|r  193 SLDQLSLDVLRPMLREWLDDNL---PGIVERLVREEIERIA  230 (236)
Q Consensus       193 tle~lv~emLrPmLk~WLD~nL---P~lVErlVr~EIerv~  230 (236)
                      -+-.+|..+++--|..||+.|-   =.|+++.++.-=.|.+
T Consensus       124 ev~~~v~~~v~~~l~~~L~~np~~a~~I~~k~~~~~~aR~~  164 (172)
T d1kija1         124 EAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREA  164 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf             31006777799999999998989999999999998999999


No 21 
>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.01  E-value=21  Score=13.72  Aligned_cols=10  Identities=20%  Similarity=0.574  Sum_probs=5.7

Q ss_pred             HHHHHHHHCH
Q ss_conf             9997661035
Q gi|254780932|r  206 LREWLDDNLP  215 (236)
Q Consensus       206 Lk~WLD~nLP  215 (236)
                      ||.|.+++|-
T Consensus        27 Lr~wv~~sld   36 (149)
T d2nxpa1          27 LKHFIECSLD   36 (149)
T ss_dssp             HHHHHHTSCH
T ss_pred             HHHHHHHCCH
T ss_conf             9999996968


Done!