RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780932|ref|YP_003065345.1| hypothetical protein
CLIBASIA_04155 [Candidatus Liberibacter asiaticus str. psy62]
         (236 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 36/163 (22%), Positives = 54/163 (33%), Gaps = 59/163 (36%)

Query: 114 SILPST--DALEENAVMDKPLNEGLSPS-----SDLGMQAEESMYSPDLVDKCKG---EE 163
           S+ PS   D+LE N        EG  PS     S+L  +  +     D V+K        
Sbjct: 318 SLPPSILEDSLENN--------EG-VPSPMLSISNLTQEQVQ-----DYVNKTNSHLPAG 363

Query: 164 E----ALVSSDVGDQ--VA---SSFDQLVKALRESE-SRSLDQ----LS----------L 199
           +    +LV+        V+    S   L   LR+++    LDQ     S          L
Sbjct: 364 KQVEISLVNGA--KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421

Query: 200 DVLRPMLREWLDDNLPGIVERLVREEIE------RIARGPIRH 236
            V  P     L      I + LV+  +       +I   P+  
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI---PVYD 461



 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 37/228 (16%), Positives = 65/228 (28%), Gaps = 86/228 (37%)

Query: 29  EFSTSNNVQTQVPARDE---GVIEK--------EDFVQEDKMSNHL-------------F 64
           +F+      T+  A D+      E            V+  K+                 +
Sbjct: 36  QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95

Query: 65  ADQNS-HLKKYGVEYPKKETMSLSDVAARVRAEARGDARIIADAPSP-IANSILPSTDAL 122
            + N  H      +  ++   +L      ++      ARI+A  P    +NS L    A+
Sbjct: 96  LEGNDIHA--LAAKLLQENDTTLVKTKELIKNYIT--ARIMAKRPFDKKSNSAL--FRAV 149

Query: 123 EEN-----AVMDKPLNEGLSPSSDLGMQA------EE-----SMYSPDLVDKCKGEEEAL 166
            E      A+               G Q       EE       Y              L
Sbjct: 150 GEGNAQLVAI--------------FGGQGNTDDYFEELRDLYQTYHV------------L 183

Query: 167 VSSDVGDQVASSFDQLVKALRESESRSLDQLS--LDVLRPMLREWLDD 212
           V    GD +  S + L + +R +        +  L++L      WL++
Sbjct: 184 V----GDLIKFSAETLSELIRTTLDAE-KVFTQGLNILE-----WLEN 221



 Score = 33.4 bits (76), Expect = 0.052
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 20/135 (14%)

Query: 111 IANSILPSTDALEENAVMDKPLNE----GLSPSSDLGMQAEESMYSPDLVDKCKGEEEAL 166
           + + +L  T      A     L E     L   ++     +E     +LV K  G     
Sbjct: 16  LEHVLLVPTA-SFFIAS---QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG----Y 67

Query: 167 VSSDVGDQVASSFDQLVK-ALRESESRSLDQLSLDVLRPMLREWLDDNLPGIVER--LVR 223
           VSS V       FDQ++   L E E+  L+   +  L     + L +N   +V+   L++
Sbjct: 68  VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL---AAKLLQENDTTLVKTKELIK 124

Query: 224 E--EIERIARGPIRH 236
                  +A+ P   
Sbjct: 125 NYITARIMAKRPFDK 139


>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
           transport, biosynthetic protein; HET: GNP; 3.00A
           {Bacillus subtilis} PDB: 2px3_A*
          Length = 296

 Score = 34.4 bits (78), Expect = 0.027
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 163 EEALVSSDVGDQVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPG 216
           E+ L  + + +         +K L    S     L+ + +   L+E L D LP 
Sbjct: 46  EKLLQETGIKESTK---TNTLKKLLR-FSVEAGGLTEENVVGKLQEILCDMLPS 95


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 33.1 bits (74), Expect = 0.051
 Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 8/38 (21%)

Query: 190 ESRSLDQLSLDVLRPMLREWLDDNLPGIVERLVREEIE 227
           E ++L +L     +  L+ + DD+ P +    ++  +E
Sbjct: 18  EKQALKKL-----QASLKLYADDSAPALA---IKATME 47



 Score = 28.0 bits (61), Expect = 2.1
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 17/41 (41%)

Query: 49 EKEDFVQEDKM--SNHLFADQNSHLKKYGVEYPK---KETM 84
          EK+      K+  S  L+AD ++         P    K TM
Sbjct: 18 EKQAL---KKLQASLKLYADDSA---------PALAIKATM 46


>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
           protein transport; 2.00A {Arabidopsis thaliana}
          Length = 359

 Score = 30.9 bits (69), Expect = 0.23
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 4/101 (3%)

Query: 116 LPSTDALEENAVMDKPLNEGLSPSSDL---GMQAEESMYSPDLVDKCKGEEEALVSSDVG 172
           L      +  + ++K +  G S + +      +        +        EEAL+ SD G
Sbjct: 45  LGRLIKEKAKSDVEK-VFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFG 103

Query: 173 DQVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDN 213
            ++     + ++    S          D L+  + E L   
Sbjct: 104 PKITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKK 144


>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD,
           LEFT-handed parallel beta helix, acyl carrier protein,
           antibiotic resistance; 2.60A {Escherichia coli}
          Length = 341

 Score = 30.7 bits (68), Expect = 0.28
 Identities = 8/33 (24%), Positives = 19/33 (57%)

Query: 82  ETMSLSDVAARVRAEARGDARIIADAPSPIANS 114
            ++ L+D+A ++ AE  GD  I+    + + ++
Sbjct: 2   ASIRLADLAQQLDAELHGDGDIVITGVASMQSA 34


>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
           protein-targeting, transport protein; HET: GDP; 1.97A
           {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
          Length = 328

 Score = 30.1 bits (67), Expect = 0.41
 Identities = 11/65 (16%), Positives = 26/65 (40%)

Query: 163 EEALVSSDVGDQVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPGIVERLV 222
           E  L+ +DV  +V  +  + +K     +   +      ++   ++E + + L       +
Sbjct: 60  EIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDL 119

Query: 223 REEIE 227
            EEI 
Sbjct: 120 IEEIR 124


>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase
           domain, hormone/growth factor complex; 1.50A {Homo
           sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 1jqh_A* 2zm3_A*
           3f5p_A* 3i81_A* 2oj9_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A*
           1gag_A* 1irk_A 3bu3_A* 2auh_A* 1rqq_A* 2b4s_B* 3bu5_A*
           3bu6_A* 1p14_A 3ekk_A* ...
          Length = 322

 Score = 30.1 bits (67), Expect = 0.52
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 1   MAQYNAVSEPSMEEIVNSIRRILENNDQEFSTSNNVQTQVPARDE 45
             QYN    PS  EI++SI+  +E   +E S   + + ++P  +E
Sbjct: 276 CWQYNPKMRPSFLEIISSIKEEMEPGFREVSFYYSEENKLPEPEE 320


>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein
           transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
          Length = 320

 Score = 29.4 bits (65), Expect = 0.84
 Identities = 9/59 (15%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 163 EEALVSSDVGDQVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPGIVERL 221
           E+ L+ +D+G ++      LV+  +     S + +   ++  + + + D++      R+
Sbjct: 41  EDVLIQTDMGMKMVLKVSNLVRK-KTKRDTSFENIKDALVESLYQAYTDNDWTNKKYRI 98


>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase;
           UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A
           biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis}
           PDB: 2iu9_A* 2iua_A*
          Length = 374

 Score = 28.8 bits (63), Expect = 1.1
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 68  NSHLKKYGVEYPKKETMSLSDVAARVRAEARGDARIIADAPSPIANS 114
           +S L   G    +  T SL  +A  ++ E +G+   +      I  +
Sbjct: 11  SSGLVPRGSHMSQS-TYSLEQLADFLKVEFQGNGATLLSGVEEIEEA 56


>3ewh_A Vascular endothelial growth factor receptor 2; angiogenesis,
           receptor tyrosine kinase, DFG-OUT, transferase; HET:
           K11; 1.60A {Homo sapiens} PDB: 2qu5_A* 2qu6_A* 2rl5_A*
           3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* 3dtw_A*
           3be2_A* 2p2i_A* 1ywn_A* 1vr2_A* 3c7q_A* 2oh4_A* 3cjf_A*
           3cjg_A*
          Length = 314

 Score = 27.9 bits (61), Expect = 1.9
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 1   MAQYNAVSEPSMEEIVNSIRRILENNDQE 29
                    P+  E+V  +  +L+ N Q+
Sbjct: 278 CWHGEPSQRPTFSELVEHLGNLLQANAQQ 306


>2b0l_A GTP-sensing transcriptional pleiotropic repressor CODY;
           DNA-binding, nucleotide-binding, transcription
           regulation, winged HTH motif.; 2.90A {Bacillus subtilis}
           SCOP: a.4.5.66
          Length = 102

 Score = 27.9 bits (62), Expect = 2.1
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 155 LVDKCKGEEEALVSSDVGDQVASSFDQLVKALR--ES----ESRSLDQ--LSLDVLRPML 206
           + ++  G E  LV+S + D+V  +   +V ALR  ES    ESRSL      + VL    
Sbjct: 33  IFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKF 92

Query: 207 REWLD 211
              L+
Sbjct: 93  LIELE 97


>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition
           particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A
           {Sulfolobus solfataricus P2} PDB: 1qzx_A 1qzw_A
          Length = 433

 Score = 27.7 bits (61), Expect = 2.4
 Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 163 EEALVSSDVGDQVASSFDQLVKALRE-------SESRSLDQLSLDVLRPMLREWLDDN 213
           +++L+SSDV  ++      L   ++E              +  + ++   L +    +
Sbjct: 32  QKSLISSDVNVKLV---FSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFGGD 86


>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal
           recognition particle, SRP-GTPase, protein targeting,
           cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus
           furiosus}
          Length = 443

 Score = 27.4 bits (60), Expect = 2.6
 Identities = 8/52 (15%), Positives = 20/52 (38%)

Query: 163 EEALVSSDVGDQVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNL 214
           + AL+ +DV  ++     + ++     E         + +  ++ E L   L
Sbjct: 36  QRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFL 87


>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
           translocation, GTP-binding, nucleotide-binding, protein
           transport; 1.75A {Arabidopsis thaliana}
          Length = 302

 Score = 27.5 bits (60), Expect = 2.8
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 132 LNEGLSPSSD-LGMQAEESMY-SPDLVDKCKGE-EEALVSSDVGDQVASSFDQLVKALRE 188
           +  G S + + L +  E  ++ +    D+   E EEAL+ SD G ++     ++V+ LRE
Sbjct: 3   VFSGFSKTRENLAVIDELLLFWNLAETDRVLDELEEALLVSDFGPKIT---VRIVERLRE 59


>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase,
           isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas
           fluorescens} PDB: 3noo_A 3nor_A* 3nov_A
          Length = 231

 Score = 27.5 bits (61), Expect = 2.8
 Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 2/69 (2%)

Query: 165 ALVSSDVGDQVASS-FDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPGIVERLVR 223
            L +       A     QL  A     +      +   +    R+   D+L    E +  
Sbjct: 164 TLAAELFDAATAQRVQLQLEYAPAPPFNAGSPDTAPASVVQQARQRAADSLHKRRE-ITL 222

Query: 224 EEIERIARG 232
               R+A G
Sbjct: 223 RAAARLAAG 231


>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo
          sapiens} SCOP: a.159.4.1
          Length = 70

 Score = 27.4 bits (61), Expect = 3.2
 Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 9  EPSMEEIVNSIRRILENNDQEFSTSNNVQTQVPARDEGV--IEKEDFVQE 56
           P+ EE+  +I+++L + + E  T   +  +V          E++DF++ 
Sbjct: 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKT 60


>1y6a_A Vascular endothelial growth factor receptor 2; transferase; HET:
           AAZ; 2.10A {Homo sapiens} PDB: 1y6b_A* 3hng_A*
          Length = 366

 Score = 27.2 bits (59), Expect = 3.4
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 1   MAQYNAVSEPSMEEIVNSIRRILENNDQE 29
                    P+  E+V  +  +L+ N Q+
Sbjct: 337 CWHGEPSQRPTFSELVEHLGNLLQANAQQ 365


>3mdy_A Bone morphogenetic protein receptor type-1B; complex
           (isomerase-protein kinase), receptor serine/threonin
           structural genomics consortium, SGC; HET: LDN; 2.05A
           {Homo sapiens}
          Length = 337

 Score = 27.2 bits (60), Expect = 3.5
 Identities = 2/18 (11%), Positives = 9/18 (50%)

Query: 10  PSMEEIVNSIRRILENND 27
            +   +  ++ ++ E+ D
Sbjct: 317 LTALRVKKTLAKMSESQD 334


>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi
           class GTPase, cell cycle, GTP-binding, inner membrane,
           membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1
           c.37.1.10 PDB: 1fts_A
          Length = 309

 Score = 27.0 bits (59), Expect = 3.5
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 132 LNEGLSPSSD-LGMQAEESMYSPDLVDKCKGE-EEALVSSDVGDQVASSFDQLVKALRE 188
           L   L  + + LG           + D    E EE L+ +DVG +      +++  L E
Sbjct: 5   LKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETT---RKIITNLTE 60


>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
           nucleotide twinning, protein-protein complex, protein
           transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP:
           a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D*
           2iyl_D* 2cnw_D* 2j7p_D*
          Length = 304

 Score = 27.1 bits (59), Expect = 4.1
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 132 LNEGLSPSSDLGMQAEESMYSPDLVDKCKGE-EEALVSSDVGDQVASSFDQLVKALRESE 190
           L  GL+ + +   +  +++     +++   E E AL+++DVG        Q V+A    +
Sbjct: 7   LKAGLAKTRE---RLLKAIPWGGNLEEVLEELEMALLAADVGLSATEEILQEVRASGRKD 63

Query: 191 SRSL 194
            +  
Sbjct: 64  LKEA 67


>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG,
           protein structure initiative, PSI, joint center for
           structural genomics; HET: CIT; 1.60A {Thermotoga
           maritima} SCOP: a.24.13.1 c.37.1.10
          Length = 306

 Score = 26.7 bits (58), Expect = 4.3
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 132 LNEGLSPSSD-LGMQAEESMYSPDLVDKCKGE-EEALVSSDVGDQVASSF 179
           L +GL  + +    +  + +    L D+ + E EE L+ +DVG +     
Sbjct: 19  LKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETTEYI 68


>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
          Length = 315

 Score = 26.7 bits (58), Expect = 4.4
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 24  ENNDQEFSTSNNVQTQVPARDEGVIEKEDFVQEDKMSNHLFAD---QNSHL-KKYGVEYP 79
           E    E+   + +     A        E FV E + +NH F     +   L  ++   Y 
Sbjct: 243 EKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYT 302

Query: 80  KKETM 84
              + 
Sbjct: 303 GNISS 307


>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding,
           signal recognition particle, GTP-binding, RNA-binding;
           2.50A {Methanocaldococcus jannaschii}
          Length = 432

 Score = 26.7 bits (58), Expect = 4.8
 Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 163 EEALVSSDVGDQVASSF-DQLVKALRESESR---SLDQLSLDVLRPMLREWLDDN 213
           + AL+ +DV  ++      ++ +   E ++    S  +  + ++   L + L + 
Sbjct: 34  QRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLLGEE 88


>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
           ultrahigh resolution, protein transport; 1.10A {Thermus
           aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
           1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
           2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A
           2ng1_A*
          Length = 295

 Score = 26.6 bits (58), Expect = 5.2
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 163 EEALVSSDVGDQVASSFDQLVKALRE-------SESRSLDQLSLDVLRPMLREWLDDN 213
             AL+ +DV  +VA      V+ +RE        ES +  ++ L  +   L+E L   
Sbjct: 35  RRALMDADVNLEVA---RDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGE 89


>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M
           domain, RNA-binding, signal sequence-binding,
           helix-turn-helix, protein targeting; 3.20A {Thermus
           aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB:
           2iy3_A
          Length = 425

 Score = 26.6 bits (58), Expect = 5.2
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 10/55 (18%)

Query: 163 EEALVSSDVGDQVASSFDQLVKALRE-------SESRSLDQLSLDVLRPMLREWL 210
             AL+ +DV  +V       V+ +RE        ES +  ++ L  +   L+E L
Sbjct: 35  RRALMDADVNLEVT---RDFVERVREEALGKQVLESLTPAEVILATVYEALKEAL 86


>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
           oxidoreductase, glycolysis, rossmann fold; HET: NAD;
           1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
           3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
           3ksz_O*
          Length = 338

 Score = 26.2 bits (58), Expect = 5.9
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)

Query: 163 EEALVSSD-VGDQVASSFD 180
           E+ +VSSD VG    S FD
Sbjct: 277 EDEIVSSDVVGMTYGSLFD 295


>2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A
           {Escherichia coli}
          Length = 430

 Score = 26.2 bits (57), Expect = 6.4
 Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 10/58 (17%)

Query: 163 EEALVSSDVGDQVASSFDQLVKALRE-------SESRSLDQLSLDVLRPMLREWLDDN 213
             AL+ +DV   V     + +  ++E       ++S +  Q  + ++R  L   + + 
Sbjct: 34  RMALLEADVALPVV---REFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEE 88


>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting
           of N- and C-lobes, transferase; 2.40A {Homo sapiens}
           SCOP: d.144.1.7 PDB: 1xr0_A
          Length = 370

 Score = 26.3 bits (57), Expect = 6.5
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 1   MAQYNAVSEPSMEEIVNSIRRILENNDQE 29
                    P+ +++V  + RIL     E
Sbjct: 341 CWHAVPSQRPTFKQLVEDLDRILTLTTNE 369


>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A
           {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB:
           1j8y_F
          Length = 297

 Score = 26.2 bits (57), Expect = 7.4
 Identities = 10/64 (15%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 163 EEALVSSDVGDQVASSF-DQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPGIVERL 221
           +++L+S+DV  ++  S  +++ + L+  +  +  +   +    ++ + L +   G  E  
Sbjct: 33  QKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERR-EWFIKIVYDELSNLFGGDKEPK 91

Query: 222 VREE 225
           V  +
Sbjct: 92  VIPD 95


>3dxp_A Putative acyl-COA dehydrogenase; YP_295230.1, structural genomics,
           joint center for structural genomics, JCSG; 2.32A
           {Ralstonia eutropha JMP134}
          Length = 359

 Score = 26.0 bits (56), Expect = 7.8
 Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 5/38 (13%)

Query: 195 DQLSLDVLRPMLREWLDDNLPGIVERLVREEIERIARG 232
           DQ   D     L  W+  ++ G    L    +E+   G
Sbjct: 17  DQQRFDTEA--LEAWMRQHVEGFAGPL---SVEQFKGG 49


>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
           complex, structural genomics, NPPSFA; HET: GDP; 2.35A
           {Pyrococcus horikoshii OT3}
          Length = 357

 Score = 26.0 bits (56), Expect = 7.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 206 LREWLDDNLPGIVERLVREEIERIAR 231
           ++E +   L  + E++ RE+IER  R
Sbjct: 326 VKEEIIKTLRPLAEKVAREKIERELR 351


>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
           translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
          Length = 504

 Score = 25.9 bits (56), Expect = 9.3
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 163 EEALVSSDVGDQVASSFDQLVK--ALRESESRSLD--QLSLDVLRPMLREWLDDN 213
             AL+ +DV  ++     + VK     E  +  L+  ++    +   L + +D  
Sbjct: 36  CTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPG 90


>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
           structural genomics, mutant, structural genomics
           consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
           2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A
           2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A*
           2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
          Length = 373

 Score = 25.8 bits (56), Expect = 9.3
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 1   MAQYNAVSEPSMEEIVNSIRRILEN-NDQEFSTSNNVQTQVPARDEGVIEKEDFVQ-EDK 58
             Q +  + P  E+IV+ + +++ N    +  TS   +      D+  ++   F    D 
Sbjct: 286 CWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPSNLLLDQSNVDITTFRTTGDW 345

Query: 59  MSNHLFADQNSHLKKYGVEYPKKETMS 85
           ++    A         GVEY   +T++
Sbjct: 346 LNGVWTAHCKEIFT--GVEYSSCDTIA 370


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.310    0.128    0.344 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,918,365
Number of extensions: 86440
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 51
Length of query: 236
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 147
Effective length of database: 3,535,514
Effective search space: 519720558
Effective search space used: 519720558
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.2 bits)