RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780932|ref|YP_003065345.1| hypothetical protein
CLIBASIA_04155 [Candidatus Liberibacter asiaticus str. psy62]
(236 letters)
>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional
pleiotropic repressor CodY, C-terminal domain {Bacillus
subtilis [TaxId: 1423]}
Length = 91
Score = 27.8 bits (62), Expect = 0.88
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 155 LVDKCKGEEEALVSSDVGDQVASSFDQLVKALR--ES----ESRSLDQLS--LDVLRPML 206
+ ++ G E LV+S + D+V + +V ALR ES ESRSL + VL
Sbjct: 24 IFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKF 83
Query: 207 REWLD 211
L+
Sbjct: 84 LIELE 88
>d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor,
FtsY {Thermotoga maritima [TaxId: 2336]}
Length = 81
Score = 27.4 bits (61), Expect = 1.2
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 132 LNEGLSPSSDLGMQAEESMYSPDLVDKCKGE--EEALVSSDVGDQVASSFDQLVKALRES 189
L +GL + + + +D E EE L+ +DVG + + +++ L E
Sbjct: 7 LKKGLQKTKETFFGRVVKLLKGKKLDDETREELEELLIQADVGVETT---EYILERLEEK 63
Query: 190 ESRSLDQLSLDVLRPML 206
+ +L+ L +++ +L
Sbjct: 64 DGDALESLK-EIILEIL 79
>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 27.0 bits (60), Expect = 1.4
Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 9 EPSMEEIVNSIRRILENNDQEFSTSNNVQTQVPARDEGV--IEKEDFVQE 56
P+ EE+ +I+++L + + E T + +V E++DF++
Sbjct: 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKT 60
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex,
superhelical domain {Lamprey (Ichthyomyzon unicuspis)
[TaxId: 30308]}
Length = 336
Score = 26.8 bits (59), Expect = 1.5
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 170 DVGDQVASSFDQLVKALRESESRSLDQLSLDVL-RPMLREWLDDNLP 215
V + + F +L LR ++ L + + + R W+ D +P
Sbjct: 36 SVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLHQQKDYRRWILDAVP 82
>d1neka3 d.168.1.1 (A:236-355) Succinate dehydogenase {Escherichia
coli [TaxId: 562]}
Length = 120
Score = 26.9 bits (59), Expect = 1.7
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 173 DQVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPGIVERLVREEIERIARG 232
D VA S ++ R + L L + +E L+ LPGI+E +
Sbjct: 52 DVVARSIMIEIREGRGCDGPWGPHAKLK-LDHLGKEVLESRLPGILELSRTFAHVDPVKE 110
Query: 233 PI 234
PI
Sbjct: 111 PI 112
>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 308
Score = 26.7 bits (58), Expect = 1.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQEFS 31
QYN PS EI++SI+ +E +E S
Sbjct: 271 CWQYNPKMRPSFLEIISSIKEEMEPGFREVS 301
>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 301
Score = 26.3 bits (57), Expect = 2.3
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILE 24
PS I ++R+ E
Sbjct: 278 CWSKLPADRPSFCSIHRILQRMCE 301
>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor
receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 26.4 bits (57), Expect = 2.4
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENN 26
P+ E+V + +L+ N
Sbjct: 273 CWHGEPSQRPTFSELVEHLGNLLQAN 298
>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 299
Score = 26.3 bits (57), Expect = 2.5
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILEN 25
Q + P +IVN++ +++ N
Sbjct: 269 CWQKDRNHRPKFGQIVNTLDKMIRN 293
>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET
{Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 25.9 bits (56), Expect = 2.9
Identities = 9/37 (24%), Positives = 11/37 (29%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQEFSTSNNVQ 37
A PS E+V+ I I E N
Sbjct: 270 CWHPKAEMRPSFSELVSRISAIFSTFIGEHYVHVNAT 306
>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 309
Score = 25.5 bits (55), Expect = 3.5
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENNDQEFSTS 33
+ PS +I+ S+ R+LE +T+
Sbjct: 262 CWREKPYERPSFAQILVSLNRMLEERKTYVNTT 294
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 25.6 bits (55), Expect = 4.1
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 24 ENNDQEFSTSNNVQTQVPARDEGVIEKEDFVQEDKMSNHLFAD---QNSHL-KKYGVEYP 79
E E+ + + A E FV E + +NH F + L ++ Y
Sbjct: 216 EKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYT 275
Query: 80 KKETM 84
+
Sbjct: 276 GNISS 280
>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo
sapiens) [TaxId: 9606]}
Length = 263
Score = 25.4 bits (55), Expect = 4.2
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILEN 25
+ P+ ++ + I E+
Sbjct: 238 CWKERPEDRPAFSRLLRQLAEIAES 262
>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 283
Score = 25.2 bits (54), Expect = 5.1
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENND 27
Q P +IV+ + +++ D
Sbjct: 249 CWQQERARRPKFADIVSILDKLIRAPD 275
>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 287
Score = 25.1 bits (54), Expect = 6.2
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILENND 27
Q+N PS EI + + + +
Sbjct: 252 CWQWNPSDRPSFAEIHQAFETMFQESS 278
>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 24.7 bits (53), Expect = 7.7
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 1 MAQYNAVSEPSMEEIVNSIRRILE 24
Y+ P E+ + ILE
Sbjct: 245 CWAYDPSRRPRFTELKAQLSTILE 268
>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 118
Score = 24.6 bits (53), Expect = 8.7
Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 171 VGDQVAS---------SFDQLVKALRESESRSLDQLSLDVLRPMLREWLDD 212
GD++ + + + AL+++ ++ D + L V +E+ D+
Sbjct: 64 KGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDE 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.128 0.344
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 816,955
Number of extensions: 36542
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 25
Length of query: 236
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 153
Effective length of database: 1,268,006
Effective search space: 194004918
Effective search space used: 194004918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.5 bits)