HHsearch alignment for GI: 254780933 and conserved domain: COG0060

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=1638.07  Aligned_cols=736  Identities=28%  Similarity=0.478  Sum_probs=665.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             8767897898899999998769864453-454899808997284499998654378896779999987670898356778
Q gi|254780933|r    3 IDKTYDFAFIEQKSVEKWNSVDAFRIDV-APKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQP   81 (947)
Q Consensus         3 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~-~~~~~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~   81 (947)
T Consensus        14 fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~p   93 (933)
T COG0060          14 FPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVP   93 (933)
T ss_pred             CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             77669923418899988887369999999973899808974799977898226566776666634333204588589889


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHH
Q ss_conf             81545408999999997674599877779899999999999999999999999808366427981158867999999999
Q gi|254780933|r   82 GTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAF  161 (947)
Q Consensus        82 G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F  161 (947)
T Consensus        94 GWDcHGLPIE~~vek~lg~-~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f  172 (933)
T COG0060          94 GWDCHGLPIELKVEKKLGI-GKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAF  172 (933)
T ss_pred             CCCCCCCHHHHHHHHHHCC-CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEECCCHHHHHHHHHHH
T ss_conf             9767882288999998287-631143348999999999999999999999987636763268980327889999999999


Q ss_pred             HHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             99998894331332022037767801486865414687669999653045300012455555442456887169998267
Q gi|254780933|r  162 VVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTR  241 (947)
Q Consensus       162 ~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Ttr  241 (947)
T Consensus       173 ~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~~~------------~----~~~~~~lviWTTT  236 (933)
T COG0060         173 KELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDE------------G----LDENAYLVIWTTT  236 (933)
T ss_pred             HHHHHCCCEECCCEEEEECCCCCCCHHHHHHCCCCCCCCEEEEEEEECCC------------C----CCCCCEEEEEECC
T ss_conf             99997797522770012268777600366640256689628999773357------------8----8777079999489


Q ss_pred             CCHHCHHHHHHHHHCC------------------------------------HHHHHHCCCEEEECCCC----CCCCCCC
Q ss_conf             4010102444444100------------------------------------01231115423320248----6573210
Q gi|254780933|r  242 PETMFGDVAIAVHPDD------------------------------------YRYKELIGKYATLPIVG----RLIPIVS  281 (947)
Q Consensus       242 PeTl~g~~a~~v~P~d------------------------------------~~y~~l~G~~~~~Pl~~----~~ipi~~  281 (947)
T Consensus       237 PWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~vi~  316 (933)
T COG0060         237 PWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVIL  316 (933)
T ss_pred             CCCCHHCCEEEECCCCCEEEEEECCEEEEEHHHHHHHHHHHCCCCCEEEEEEEEHHHHCCCEEECCCCCCCCCCEEEEEE
T ss_conf             87731004367679851699997888999829989999987098420776775536628787648876545456046885


Q ss_pred             CCCCCCCCCCCEEEECCCCCHHHHHHHHHCC-CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             0003421223203212477855656643046-531110167775213665444555434655465553100151233448
Q gi|254780933|r  282 DVYPDPEFGDGAVKVTPAHDFNDFEIAKRHG-LGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARS  360 (947)
Q Consensus       282 ~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~-l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~a~~  360 (947)
T Consensus       317 gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~------------------~~~~G~~v~dAn~  378 (933)
T COG0060         317 GDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEA------------------PKYEGLFVKDANK  378 (933)
T ss_pred             CCEEECCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC------------------HHHCCCEECCCCH
T ss_conf             2767227984105638989878999999829967646668885566654------------------3217824000789


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHCCCC
Q ss_conf             88998888764333210223222356665532444312221214542023334320024411214431135676410111
Q gi|254780933|r  361 KIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQP  440 (947)
Q Consensus       361 ~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl~~~~D  440 (947)
T Consensus       379 ~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~--~v~w~P~~~~~R~~~mve~r~D  456 (933)
T COG0060         379 KIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEIN--KVNWVPDWGKNRFGNMVENRPD  456 (933)
T ss_pred             HHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEEECCHHEEEHHHHHHHHHHHHH--CCEEECHHHHHHHHHHHCCCCC
T ss_conf             99999986795315335775798666789806985052033678889999999985--5568871578999999718986


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCEEECCCEECCEEECC
Q ss_conf             232123545631026983899887657623445420345567877-6555-41002568888310188241002202044
Q gi|254780933|r  441 WCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDN-DMTV-KVRKMIKDGNISDLLKRDEDVLDTWFSSA  518 (947)
Q Consensus       441 W~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~r~~DvlDtWfdSg  518 (947)
T Consensus       457 W~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSG  536 (933)
T COG0060         457 WCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSG  536 (933)
T ss_pred             CEEECCCCCCCCEEEEEECCCCCEECCHHHHHHHHHHHHHHCCCHHHHCCCHHHHCCCCCCCCCEEEECCCCEEEEECCC
T ss_conf             43651666788533799889997423289999999877432172665156347645788887650596575468887378


Q ss_pred             CCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHCC
Q ss_conf             23332010111100012345553012455432101356777665301211337868520000144310001225543124
Q gi|254780933|r  519 LWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKG  598 (947)
Q Consensus       519 ~~p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~G  598 (947)
T Consensus       537 s~~~a~~~-~~~~~~~~~~~-aD~~lEGsDQ~RGWF~Ssl~~s~a~~------~~aPYk~vltHGfvlDe~GrKMSKSlG  608 (933)
T COG0060         537 STPYAVLH-PRENLKFPALF-ADFYLEGSDQTRGWFYSSLLTSTALF------GRAPYKNVLTHGFVLDEKGRKMSKSLG  608 (933)
T ss_pred             CCCCCCCC-CCCCCCCCCCC-CCEEEEECCCCCHHHHHHHHHHHHHC------CCCHHHHHHHCCCEECCCCCCCCCCCC
T ss_conf             97111107-75444676555-75799706655226899999999972------885078776326178888887655578


Q ss_pred             CCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCHHHHH
Q ss_conf             565302332025403444543123355677543411011100001234443333202444577676--774333155567
Q gi|254780933|r  599 NVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSF--VPQDVKWIVNKW  676 (947)
Q Consensus       599 Nvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~--~~~~~~~~~Drw  676 (947)
T Consensus       609 N~v~P~~V~~~yGADiLRLwv~ssd-~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drw  687 (933)
T COG0060         609 NVVDPQDVIDKYGADILRLWVASSD-YWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRW  687 (933)
T ss_pred             CCCCHHHHHHHHCCHHEEEEEEECC-CHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHH
T ss_conf             8189899987627634046656158-230320278899999999999999999998850589942133514442321799


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf             799999999888998753100102457776531001368898647653056--714443210001456764034567744
Q gi|254780933|r  677 IIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQK--DSELVSETLSCFSYVLYNVCKLLHPII  754 (947)
Q Consensus       677 ils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l~~~--~~~~~~~~~~~l~~vl~~~l~ll~P~~  754 (947)
T Consensus       688 il~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPil  767 (933)
T COG0060         688 ILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPIL  767 (933)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999999998467999999999998856658898887887640479998899999999999999999971010


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf             899999997435666767565366357878774
Q gi|254780933|r  755 PFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLII  787 (947)
Q Consensus       755 PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~~  787 (947)
T Consensus       768 PftaEeiw~~l~~~~~---~eSVhl~~~p~~~~  797 (933)
T COG0060         768 PFTAEEIWQNLPGERK---EESVHLEDWPEVDE  797 (933)
T ss_pred             HHHHHHHHHHCCCCCC---CCEEEECCCCCCCC
T ss_conf             3659999974766788---75367035765543