HHsearch alignment for GI: 254780933 and conserved domain: COG0143
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=568.42 Aligned_cols=490 Identities=24% Similarity=0.363 Sum_probs=387.6
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf 98089972844999986543788967799999876708983567788154540899999999767459987777989999
Q gi|254780933|r 36 SGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFI 115 (947)
Q Consensus 36 ~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~ 115 (947)
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~-----g~tP~-------- 70 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKE-----GITPQ-------- 70 (558)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHC-----CCCHH--------
T ss_conf 87389955898899986413678887899999999826975899951478777889999985-----99989--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCC
Q ss_conf 99999999999999999998083664279811588679999999999999889433133202203776780148686541
Q gi|254780933|r 116 EKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQK 195 (947)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~ 195 (947)
T Consensus 71 ----el~d~~~~~~~~~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~-- 142 (558)
T COG0143 71 ----ELVDKNHEEFKELFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE-- 142 (558)
T ss_pred ----HHHHHHHHHHHHHHHHHCCCCC--EECCCCCHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCCHHEE--
T ss_conf ----9999999999999998098543--00168977799999999999997898731443564735435645621020--
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCC
Q ss_conf 46876699996530453000124555554424568871699982674010102444444100012311154233202486
Q gi|254780933|r 196 EVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGR 275 (947)
Q Consensus 196 ~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~ 275 (947)
T Consensus 143 ---------------------------------------------------------------------g~---cp~cg~ 150 (558)
T COG0143 143 ---------------------------------------------------------------------GT---CPKCGG 150 (558)
T ss_pred ---------------------------------------------------------------------CC---CCCCCC
T ss_conf ---------------------------------------------------------------------55---898675
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 57321000034212232032124778556566430465311101677752136654445554346554655531001512
Q gi|254780933|r 276 LIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDC 355 (947)
Q Consensus 276 ~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 355 (947)
T Consensus 151 ~---------------------------~------------------a~GD----------------------------- 156 (558)
T COG0143 151 E---------------------------D------------------ARGD----------------------------- 156 (558)
T ss_pred C---------------------------C------------------CCCC-----------------------------
T ss_conf 3---------------------------4------------------5764-----------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHH
Q ss_conf 33448889988887643332102232223566655324443122212145420233343200244112144311356764
Q gi|254780933|r 356 FAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWL 435 (947)
Q Consensus 356 ~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl 435 (947)
T Consensus 157 ---------~Ce~Cg~~~~P~~l--~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i 225 (558)
T COG0143 157 ---------QCENCGRTLDPTEL--INPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFL 225 (558)
T ss_pred ---------HHHHCCCCCCCHHC--CCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf ---------34322675792121--7981686479764335405998879869999999973965458868999999999
Q ss_pred H-CCCCCCCCC-CCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECC
Q ss_conf 1-011123212-35456310269838998876576234454203455678776555410025688883101882410022
Q gi|254780933|r 436 E-NIQPWCISR-QIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDT 513 (947)
Q Consensus 436 ~-~~~DW~ISR-qr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDt 513 (947)
T Consensus 226 ~~GL~d~~IsR~~~~WGipvP---~-~p----------------------------------------------~kv~YV 255 (558)
T COG0143 226 KEGLKDLSITRTDLDWGIPVP---G-DP----------------------------------------------GKVIYV 255 (558)
T ss_pred HCCCCCCCEECCCCCCCCCCC---C-CC----------------------------------------------CCEEEE
T ss_conf 766866431458988772579---9-99----------------------------------------------877999
Q ss_pred EEECCCCCCCEECHH---HHHHCCCCCCCCC----CCCCCCCCCCC----HHHHHHHHHHHCCCCCCCCCCCCCCHHCCC
Q ss_conf 020442333201011---1100012345553----01245543210----135677766530121133786852000014
Q gi|254780933|r 514 WFSSALWPFASLGWP---EQTAELKTYYPTS----VLVTGFDILFF----WVARMMMMGLYFMKDAEGKGIEPFHIVYMH 582 (947)
Q Consensus 514 WfdSg~~p~~~l~~p---~~~~e~~~~~P~d----~~~~G~Di~r~----W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~h 582 (947)
T Consensus 256 WfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~----------lP-~~i~ah 324 (558)
T COG0143 256 WFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLP----------LP-TRIFAH 324 (558)
T ss_pred EECCHHHHHHHHCCHHCCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC----------CC-CEEEEE
T ss_conf 6344889999954121058767898637788845999962456743245789999738999----------88-779840
Q ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC--HHHHHHHHH-HHHHHHCCCCC
Q ss_conf 431000122554312456530233202540344454312335567754341101110--000123444-33332024445
Q gi|254780933|r 583 ALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGY--RNFITKFWN-AIRFSKMKNAR 659 (947)
Q Consensus 583 G~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~--r~f~nKLwN-a~rf~~~~~~~ 659 (947)
T Consensus 325 g~l~~-~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~l~fi~k- 402 (558)
T COG0143 325 GFLTL-EGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINK- 402 (558)
T ss_pred EEEEE-CCCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 13997-7941244288187179999874823857988873778888888999999999899887888999999999975-
Q ss_pred CCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHH-HCCC-HHHHHHH
Q ss_conf 7767677433--3155567799999999888998753100102457776531001368898647653-0567-1444321
Q gi|254780933|r 660 HSVSFVPQDV--KWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSIL-NQKD-SELVSET 735 (947)
Q Consensus 660 ~~~~~~~~~~--~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l-~~~~-~~~~~~~ 735 (947)
T Consensus 403 ~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~--~~~N~Yi~~~~PW~l~k~~~~~~~~~v 480 (558)
T COG0143 403 YFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALA--SRANKYIDEQAPWKLAKEDKRERLATV 480 (558)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCCCHHHCCCCHHHHHHH
T ss_conf 259968865455534569999999999999999998625999999999999--999887642898023204729999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 000145676403456774489999999743566
Q gi|254780933|r 736 LSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQ 768 (947)
Q Consensus 736 ~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~ 768 (947)
T Consensus 481 l~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~ 513 (558)
T COG0143 481 LYLALELVRVLAILLYPFMPETAEKIWDQLGLE 513 (558)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
T ss_conf 999999999999981586860299999982886