HHsearch alignment for GI: 254780933 and conserved domain: COG0143

>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=568.42  Aligned_cols=490  Identities=24%  Similarity=0.363  Sum_probs=387.6

Q ss_pred             CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf             98089972844999986543788967799999876708983567788154540899999999767459987777989999
Q gi|254780933|r   36 SGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFI  115 (947)
Q Consensus        36 ~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~  115 (947)
T Consensus         4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~-----g~tP~--------   70 (558)
T COG0143           4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKE-----GITPQ--------   70 (558)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHC-----CCCHH--------
T ss_conf             87389955898899986413678887899999999826975899951478777889999985-----99989--------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCC
Q ss_conf             99999999999999999998083664279811588679999999999999889433133202203776780148686541
Q gi|254780933|r  116 EKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQK  195 (947)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~  195 (947)
T Consensus        71 ----el~d~~~~~~~~~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~--  142 (558)
T COG0143          71 ----ELVDKNHEEFKELFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE--  142 (558)
T ss_pred             ----HHHHHHHHHHHHHHHHHCCCCC--EECCCCCHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCCHHEE--
T ss_conf             ----9999999999999998098543--00168977799999999999997898731443564735435645621020--


Q ss_pred             CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCC
Q ss_conf             46876699996530453000124555554424568871699982674010102444444100012311154233202486
Q gi|254780933|r  196 EVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGR  275 (947)
Q Consensus       196 ~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~  275 (947)
T Consensus       143 ---------------------------------------------------------------------g~---cp~cg~  150 (558)
T COG0143         143 ---------------------------------------------------------------------GT---CPKCGG  150 (558)
T ss_pred             ---------------------------------------------------------------------CC---CCCCCC
T ss_conf             ---------------------------------------------------------------------55---898675


Q ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             57321000034212232032124778556566430465311101677752136654445554346554655531001512
Q gi|254780933|r  276 LIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDC  355 (947)
Q Consensus       276 ~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v  355 (947)
T Consensus       151 ~---------------------------~------------------a~GD-----------------------------  156 (558)
T COG0143         151 E---------------------------D------------------ARGD-----------------------------  156 (558)
T ss_pred             C---------------------------C------------------CCCC-----------------------------
T ss_conf             3---------------------------4------------------5764-----------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHH
Q ss_conf             33448889988887643332102232223566655324443122212145420233343200244112144311356764
Q gi|254780933|r  356 FAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWL  435 (947)
Q Consensus       356 ~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl  435 (947)
T Consensus       157 ---------~Ce~Cg~~~~P~~l--~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i  225 (558)
T COG0143         157 ---------QCENCGRTLDPTEL--INPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFL  225 (558)
T ss_pred             ---------HHHHCCCCCCCHHC--CCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             ---------34322675792121--7981686479764335405998879869999999973965458868999999999


Q ss_pred             H-CCCCCCCCC-CCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECC
Q ss_conf             1-011123212-35456310269838998876576234454203455678776555410025688883101882410022
Q gi|254780933|r  436 E-NIQPWCISR-QIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDT  513 (947)
Q Consensus       436 ~-~~~DW~ISR-qr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDt  513 (947)
T Consensus       226 ~~GL~d~~IsR~~~~WGipvP---~-~p----------------------------------------------~kv~YV  255 (558)
T COG0143         226 KEGLKDLSITRTDLDWGIPVP---G-DP----------------------------------------------GKVIYV  255 (558)
T ss_pred             HCCCCCCCEECCCCCCCCCCC---C-CC----------------------------------------------CCEEEE
T ss_conf             766866431458988772579---9-99----------------------------------------------877999


Q ss_pred             EEECCCCCCCEECHH---HHHHCCCCCCCCC----CCCCCCCCCCC----HHHHHHHHHHHCCCCCCCCCCCCCCHHCCC
Q ss_conf             020442333201011---1100012345553----01245543210----135677766530121133786852000014
Q gi|254780933|r  514 WFSSALWPFASLGWP---EQTAELKTYYPTS----VLVTGFDILFF----WVARMMMMGLYFMKDAEGKGIEPFHIVYMH  582 (947)
Q Consensus       514 WfdSg~~p~~~l~~p---~~~~e~~~~~P~d----~~~~G~Di~r~----W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~h  582 (947)
T Consensus       256 WfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~----------lP-~~i~ah  324 (558)
T COG0143         256 WFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLP----------LP-TRIFAH  324 (558)
T ss_pred             EECCHHHHHHHHCCHHCCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC----------CC-CEEEEE
T ss_conf             6344889999954121058767898637788845999962456743245789999738999----------88-779840


Q ss_pred             CCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC--HHHHHHHHH-HHHHHHCCCCC
Q ss_conf             431000122554312456530233202540344454312335567754341101110--000123444-33332024445
Q gi|254780933|r  583 ALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGY--RNFITKFWN-AIRFSKMKNAR  659 (947)
Q Consensus       583 G~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~--r~f~nKLwN-a~rf~~~~~~~  659 (947)
T Consensus       325 g~l~~-~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~l~fi~k-  402 (558)
T COG0143         325 GFLTL-EGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINK-  402 (558)
T ss_pred             EEEEE-CCCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf             13997-7941244288187179999874823857988873778888888999999999899887888999999999975-


Q ss_pred             CCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHH-HCCC-HHHHHHH
Q ss_conf             7767677433--3155567799999999888998753100102457776531001368898647653-0567-1444321
Q gi|254780933|r  660 HSVSFVPQDV--KWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSIL-NQKD-SELVSET  735 (947)
Q Consensus       660 ~~~~~~~~~~--~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~l-~~~~-~~~~~~~  735 (947)
T Consensus       403 ~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~--~~~N~Yi~~~~PW~l~k~~~~~~~~~v  480 (558)
T COG0143         403 YFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALA--SRANKYIDEQAPWKLAKEDKRERLATV  480 (558)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCCCHHHCCCCHHHHHHH
T ss_conf             259968865455534569999999999999999998625999999999999--999887642898023204729999999


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             000145676403456774489999999743566
Q gi|254780933|r  736 LSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQ  768 (947)
Q Consensus       736 ~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~  768 (947)
T Consensus       481 l~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~  513 (558)
T COG0143         481 LYLALELVRVLAILLYPFMPETAEKIWDQLGLE  513 (558)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
T ss_conf             999999999999981586860299999982886