HHsearch alignment for GI: 254780933 and conserved domain: COG1384
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis].
Probab=97.39 E-value=3.4e-05 Score=56.39 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=73.9
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--------HHHHHHHHHHHHHHCCCCHHH
Q ss_conf 808997284499998654378896779999987670898356778815454--------089999999976745998777
Q gi|254780933|r 37 GVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAG--------IATQITVESRLFAQSSLTRED 108 (947)
Q Consensus 37 ~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~G--------lPiE~~vek~l~~~~~~~~~~ 108 (947)
T Consensus 19 ~~~~v~tGi-sPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATGI-SPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CCEEEECCC-CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 868983476-8988732142898989999999999748865799981487510127999998689998709964348997
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEC
Q ss_conf 7989999999999999999999999980836642
Q gi|254780933|r 109 IGRDAFIEKVWEWKKESGGSILSQLKRLGASCDW 142 (947)
Q Consensus 109 ~g~~~f~~~~~~~~~~~~~~~~~~~~~lG~~~Dw 142 (947)
T Consensus 98 ~G------~~~Sya~hf~~~f~~~l~~~Gi~~E~ 125 (521)
T COG1384 98 FG------CCDSYAEHFLRPFEEFLDEFGIEVEF 125 (521)
T ss_pred CC------CCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 66------53359999999999999864986499