HHsearch alignment for GI: 254780933 and conserved domain: PRK12268
>PRK12268 methionyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=733.71 Aligned_cols=491 Identities=21% Similarity=0.317 Sum_probs=379.1
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf 80899728449999865437889677-99999876708983567788154540899999999767459987777989999
Q gi|254780933|r 37 GVFCIAMPPPNVTGSLHMGHAFNTTI-QDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFI 115 (947)
Q Consensus 37 ~~f~~~~ppP~~nG~lHiGH~~~~t~-~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~ 115 (947)
T Consensus 3 ~k~~iTt~~Py~nG~lHiGH~~~~~l~aDi~aRy~R~~G~~v~~~~GtD~hG~~i~~~A~k~-----g~~p--------- 68 (558)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSYLPADVYARYQRLKGNEVLFVSGSDEHGTPIELEAEKE-----GVSP--------- 68 (558)
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC-----CCCH---------
T ss_conf 51898479988889855231114198999999999837998797584064749999999985-----9999---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCC
Q ss_conf 99999999999999999998083664279811588679999999999999889433133202203776780148686541
Q gi|254780933|r 116 EKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQK 195 (947)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~ 195 (947)
T Consensus 69 ---~e~~~~~~~~~~~~~~~lgis~D~--f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~~fl~d~~v~-- 141 (558)
T PRK12268 69 ---QELADKYHEEHKEDFEKLGISYDN--YTRTTSPEHHELVQEFFLKLYENGYIEKKTIEQAYCPSDGRFLPDRYVE-- 141 (558)
T ss_pred ---HHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHC--
T ss_conf ---999999999999999981983776--8668988999999999999998899330135343684112313123315--
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCC
Q ss_conf 46876699996530453000124555554424568871699982674010102444444100012311154233202486
Q gi|254780933|r 196 EVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGR 275 (947)
Q Consensus 196 ~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~ 275 (947)
T Consensus 142 ---------------------------------------------------------------------G~--------- 143 (558)
T PRK12268 142 ---------------------------------------------------------------------GT--------- 143 (558)
T ss_pred ---------------------------------------------------------------------CC---------
T ss_conf ---------------------------------------------------------------------40---------
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 57321000034212232032124778556566430465311101677752136654445554346554655531001512
Q gi|254780933|r 276 LIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDC 355 (947)
Q Consensus 276 ~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 355 (947)
T Consensus 144 ---------------------cP~c~~~~~-----~-----------Gd~-----------c-------e~cg~~----- 163 (558)
T PRK12268 144 ---------------------CPYCGYEKA-----R-----------GDQ-----------C-------DNCGAL----- 163 (558)
T ss_pred ---------------------CCCCCCCCC-----C-----------CCH-----------H-------HHCCCC-----
T ss_conf ---------------------677687435-----6-----------732-----------5-------324764-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHH
Q ss_conf 33448889988887643332102232223566655324443122212145420233343200244112144311356764
Q gi|254780933|r 356 FAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWL 435 (947)
Q Consensus 356 ~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl 435 (947)
T Consensus 164 ~~~~-----dl--------------i~p~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~--~~~~p~~~~~~~~~~l 222 (558)
T PRK12268 164 LDPT-----DL--------------INPRSKISGSTPEFRETEHFFLDLPAFQEALRKWIES--GTDWPPNVLNFTLNWL 222 (558)
T ss_pred CCHH-----HH--------------CCCCCCCCCCCCEEEECCCEEECCHHHHHHHHHHHHC--CCCCCHHHHHHHHHHH
T ss_conf 7857-----72--------------4885677899444773453021418778999999853--8877889999999998
Q ss_pred -HCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCE
Q ss_conf -1011123212354563102698389988765762344542034556787765554100256888831018824100220
Q gi|254780933|r 436 -ENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTW 514 (947)
Q Consensus 436 -~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtW 514 (947)
T Consensus 223 ~~~l~D~~ISR~~~WGipiP~~~~~~~------------------------------------------------~iyVW 254 (558)
T PRK12268 223 KEGLKPRAITRDLPWGIPIPFEGAEGK------------------------------------------------VFYVW 254 (558)
T ss_pred HCCCCCCCCCCCCCCCEECCCCCCCCC------------------------------------------------EEEEE
T ss_conf 633756545553878657885556896------------------------------------------------79886
Q ss_pred EECCCCCCCEE-CHH---HHHHCCCCCCCCC----CCCCCCCCCCC----HHHHHHHHHHHCCCCCCCCCCCCCCHHCCC
Q ss_conf 20442333201-011---1100012345553----01245543210----135677766530121133786852000014
Q gi|254780933|r 515 FSSALWPFASL-GWP---EQTAELKTYYPTS----VLVTGFDILFF----WVARMMMMGLYFMKDAEGKGIEPFHIVYMH 582 (947)
Q Consensus 515 fdSg~~p~~~l-~~p---~~~~e~~~~~P~d----~~~~G~Di~r~----W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~h 582 (947)
T Consensus 255 ~Da~~~yis~~~~~~~~~~~~~~~~~~W~~~~~~~~~f~GkDii~FH~v~wpa~l~a~~~--------~~~lP-~~i~~~ 325 (558)
T PRK12268 255 FDAPIGYISATKEWAKRKGDPEAWKEFWLDSDTKYYYFIGKDNIPFHSVIWPAMLLGSGE--------PYKLP-TAIVSS 325 (558)
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--------CCCCC-CEEEEE
T ss_conf 578722034336545416985679872789984277643666543478799999973379--------87788-778775
Q ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC--HHHHHHHHH-HHHHHHCCCCC
Q ss_conf 431000122554312456530233202540344454312335567754341101110--000123444-33332024445
Q gi|254780933|r 583 ALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGY--RNFITKFWN-AIRFSKMKNAR 659 (947)
Q Consensus 583 G~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~--r~f~nKLwN-a~rf~~~~~~~ 659 (947)
T Consensus 326 g~~~~-~G~KmSKS~Gnvi~p~~~i~~yg~D~lRy~L~~~~~~~~D~~fs~~~~~~~~N~dL~~~~gNl~~R~~~~~~k~ 404 (558)
T PRK12268 326 EYLTY-EGQKFSKSRGWGIWVDDALERLPPDYLRYYLAANAPENSDTDFTWEEFIRRVNSELADKYGNLVNRVLSFIEKN 404 (558)
T ss_pred EEEEE-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56874-68411455788779899998749077789988548888888879999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHH-HHCCCHHHHHHHHHH
Q ss_conf 7767677433315556779999999988899875310010245777653100136889864765-305671444321000
Q gi|254780933|r 660 HSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSI-LNQKDSELVSETLSC 738 (947)
Q Consensus 660 ~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~-l~~~~~~~~~~~~~~ 738 (947)
T Consensus 405 ~~g~~p~~~~~~~~d~~l~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~~--~~~N~y~~~~~PW~l~k~d~~~~~~vl~~ 482 (558)
T PRK12268 405 FGGEVPEPGELGEEDEELLEKFQELFKEVGEHYEAIEFKKALEEIMELA--RLANKYLNEKAPWKLAKTDPERAAAVLYT 482 (558)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHHHHCCCHHHHCCCHHHHHHHHHH
T ss_conf 5897898767985659999999999999999997517999999999999--99999998379854316899999999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 14567640345677448999999974356
Q gi|254780933|r 739 FSYVLYNVCKLLHPIIPFVTEDLYSHVSP 767 (947)
Q Consensus 739 l~~vl~~~l~ll~P~~PfitEeiw~~l~~ 767 (947)
T Consensus 483 ~l~~lr~~~ilL~P~mP~~se~i~~~Lg~ 511 (558)
T PRK12268 483 ALNLVKLLAILLYPFLPFSAEKIWEMLGL 511 (558)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHCCC
T ss_conf 99999999999867403999999998499