HHsearch alignment for GI: 254780933 and conserved domain: PRK12268

>PRK12268 methionyl-tRNA synthetase; Reviewed.
Probab=100.00  E-value=0  Score=733.71  Aligned_cols=491  Identities=21%  Similarity=0.317  Sum_probs=379.1

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHH
Q ss_conf             80899728449999865437889677-99999876708983567788154540899999999767459987777989999
Q gi|254780933|r   37 GVFCIAMPPPNVTGSLHMGHAFNTTI-QDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFI  115 (947)
Q Consensus        37 ~~f~~~~ppP~~nG~lHiGH~~~~t~-~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~  115 (947)
T Consensus         3 ~k~~iTt~~Py~nG~lHiGH~~~~~l~aDi~aRy~R~~G~~v~~~~GtD~hG~~i~~~A~k~-----g~~p---------   68 (558)
T PRK12268          3 MRILITSAWPYANGPLHLGHLAGSYLPADVYARYQRLKGNEVLFVSGSDEHGTPIELEAEKE-----GVSP---------   68 (558)
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC-----CCCH---------
T ss_conf             51898479988889855231114198999999999837998797584064749999999985-----9999---------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCC
Q ss_conf             99999999999999999998083664279811588679999999999999889433133202203776780148686541
Q gi|254780933|r  116 EKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQK  195 (947)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~  195 (947)
T Consensus        69 ---~e~~~~~~~~~~~~~~~lgis~D~--f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~~fl~d~~v~--  141 (558)
T PRK12268         69 ---QELADKYHEEHKEDFEKLGISYDN--YTRTTSPEHHELVQEFFLKLYENGYIEKKTIEQAYCPSDGRFLPDRYVE--  141 (558)
T ss_pred             ---HHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHC--
T ss_conf             ---999999999999999981983776--8668988999999999999998899330135343684112313123315--


Q ss_pred             CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCC
Q ss_conf             46876699996530453000124555554424568871699982674010102444444100012311154233202486
Q gi|254780933|r  196 EVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGR  275 (947)
Q Consensus       196 ~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~  275 (947)
T Consensus       142 ---------------------------------------------------------------------G~---------  143 (558)
T PRK12268        142 ---------------------------------------------------------------------GT---------  143 (558)
T ss_pred             ---------------------------------------------------------------------CC---------
T ss_conf             ---------------------------------------------------------------------40---------


Q ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             57321000034212232032124778556566430465311101677752136654445554346554655531001512
Q gi|254780933|r  276 LIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDC  355 (947)
Q Consensus       276 ~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v  355 (947)
T Consensus       144 ---------------------cP~c~~~~~-----~-----------Gd~-----------c-------e~cg~~-----  163 (558)
T PRK12268        144 ---------------------CPYCGYEKA-----R-----------GDQ-----------C-------DNCGAL-----  163 (558)
T ss_pred             ---------------------CCCCCCCCC-----C-----------CCH-----------H-------HHCCCC-----
T ss_conf             ---------------------677687435-----6-----------732-----------5-------324764-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHH
Q ss_conf             33448889988887643332102232223566655324443122212145420233343200244112144311356764
Q gi|254780933|r  356 FAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWL  435 (947)
Q Consensus       356 ~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~~~~wl  435 (947)
T Consensus       164 ~~~~-----dl--------------i~p~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~--~~~~p~~~~~~~~~~l  222 (558)
T PRK12268        164 LDPT-----DL--------------INPRSKISGSTPEFRETEHFFLDLPAFQEALRKWIES--GTDWPPNVLNFTLNWL  222 (558)
T ss_pred             CCHH-----HH--------------CCCCCCCCCCCCEEEECCCEEECCHHHHHHHHHHHHC--CCCCCHHHHHHHHHHH
T ss_conf             7857-----72--------------4885677899444773453021418778999999853--8877889999999998


Q ss_pred             -HCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCE
Q ss_conf             -1011123212354563102698389988765762344542034556787765554100256888831018824100220
Q gi|254780933|r  436 -ENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTW  514 (947)
Q Consensus       436 -~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtW  514 (947)
T Consensus       223 ~~~l~D~~ISR~~~WGipiP~~~~~~~------------------------------------------------~iyVW  254 (558)
T PRK12268        223 KEGLKPRAITRDLPWGIPIPFEGAEGK------------------------------------------------VFYVW  254 (558)
T ss_pred             HCCCCCCCCCCCCCCCEECCCCCCCCC------------------------------------------------EEEEE
T ss_conf             633756545553878657885556896------------------------------------------------79886


Q ss_pred             EECCCCCCCEE-CHH---HHHHCCCCCCCCC----CCCCCCCCCCC----HHHHHHHHHHHCCCCCCCCCCCCCCHHCCC
Q ss_conf             20442333201-011---1100012345553----01245543210----135677766530121133786852000014
Q gi|254780933|r  515 FSSALWPFASL-GWP---EQTAELKTYYPTS----VLVTGFDILFF----WVARMMMMGLYFMKDAEGKGIEPFHIVYMH  582 (947)
Q Consensus       515 fdSg~~p~~~l-~~p---~~~~e~~~~~P~d----~~~~G~Di~r~----W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~h  582 (947)
T Consensus       255 ~Da~~~yis~~~~~~~~~~~~~~~~~~W~~~~~~~~~f~GkDii~FH~v~wpa~l~a~~~--------~~~lP-~~i~~~  325 (558)
T PRK12268        255 FDAPIGYISATKEWAKRKGDPEAWKEFWLDSDTKYYYFIGKDNIPFHSVIWPAMLLGSGE--------PYKLP-TAIVSS  325 (558)
T ss_pred             CCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--------CCCCC-CEEEEE
T ss_conf             578722034336545416985679872789984277643666543478799999973379--------87788-778775


Q ss_pred             CCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC--HHHHHHHHH-HHHHHHCCCCC
Q ss_conf             431000122554312456530233202540344454312335567754341101110--000123444-33332024445
Q gi|254780933|r  583 ALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGY--RNFITKFWN-AIRFSKMKNAR  659 (947)
Q Consensus       583 G~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~fs~~~i~~~--r~f~nKLwN-a~rf~~~~~~~  659 (947)
T Consensus       326 g~~~~-~G~KmSKS~Gnvi~p~~~i~~yg~D~lRy~L~~~~~~~~D~~fs~~~~~~~~N~dL~~~~gNl~~R~~~~~~k~  404 (558)
T PRK12268        326 EYLTY-EGQKFSKSRGWGIWVDDALERLPPDYLRYYLAANAPENSDTDFTWEEFIRRVNSELADKYGNLVNRVLSFIEKN  404 (558)
T ss_pred             EEEEE-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             56874-68411455788779899998749077789988548888888879999999999999999999999999999986


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHH-HHCCCHHHHHHHHHH
Q ss_conf             7767677433315556779999999988899875310010245777653100136889864765-305671444321000
Q gi|254780933|r  660 HSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSI-LNQKDSELVSETLSC  738 (947)
Q Consensus       660 ~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~~~~~~Yie~~K~~-l~~~~~~~~~~~~~~  738 (947)
T Consensus       405 ~~g~~p~~~~~~~~d~~l~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~~--~~~N~y~~~~~PW~l~k~d~~~~~~vl~~  482 (558)
T PRK12268        405 FGGEVPEPGELGEEDEELLEKFQELFKEVGEHYEAIEFKKALEEIMELA--RLANKYLNEKAPWKLAKTDPERAAAVLYT  482 (558)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHHHHCCCHHHHCCCHHHHHHHHHH
T ss_conf             5897898767985659999999999999999997517999999999999--99999998379854316899999999999


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             14567640345677448999999974356
Q gi|254780933|r  739 FSYVLYNVCKLLHPIIPFVTEDLYSHVSP  767 (947)
Q Consensus       739 l~~vl~~~l~ll~P~~PfitEeiw~~l~~  767 (947)
T Consensus       483 ~l~~lr~~~ilL~P~mP~~se~i~~~Lg~  511 (558)
T PRK12268        483 ALNLVKLLAILLYPFLPFSAEKIWEMLGL  511 (558)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHCCC
T ss_conf             99999999999867403999999998499