HHsearch alignment for GI: 254780933 and conserved domain: cd00395
>cd00395 Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.61 E-value=0.0041 Score=41.15 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHH-HHHHHHCCCCC
Q ss_conf 530124554321013567776653012113378685200001443100012-25543124565
Q gi|254780933|r 540 TSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNG-QKMSKSKGNVV 601 (947)
Q Consensus 540 ~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G-~KMSKS~GNvi 601 (947)
T Consensus 142 ~~~v~~G~DQ~~~~-----~l~Rdia~k~~-~~~~p--~~l~~~~l~~l~G~~KMSKS~~ns~ 196 (274)
T cd00395 142 ADLVPGGSDQDPHI-----ELGRDLARRFN-GFKKP--VALTSPLLTGLDGGKKMSKSDGNAI 196 (274)
T ss_pred CCCCCCCCCHHHHH-----HHHHHHHHHHC-CCCCC--EEEECCCCCCCCCCCCCCCCCCCCE
T ss_conf 65455561179999-----99999999944-99998--6872377446899767457899844