HHsearch alignment for GI: 254780933 and conserved domain: cd00808
>cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The descriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer, that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.14 E-value=0.01 Score=38.33 Aligned_cols=62 Identities=35% Similarity=0.527 Sum_probs=40.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHH
Q ss_conf 44999986543788967799999876708983567788154540899999999767459987777989999999999999
Q gi|254780933|r 45 PPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKE 124 (947)
Q Consensus 45 pP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~~~~~~~~~ 124 (947)
T Consensus 7 APsPtG~LHiG~~rtal~n~l~Ar~--~~G~f~LRieDtD~~-------------------R--------------~~~e 51 (239)
T cd00808 7 APSPTGYLHIGGARTALFNYLFAKK--HGGKFILRIEDTDQE-------------------R--------------SVEE 51 (239)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCCC-------------------C--------------CCHH
T ss_conf 8898985338999999999999998--199899984568988-------------------7--------------8769
Q ss_pred HHHHHHHHHHHHCCEEECC
Q ss_conf 9999999999808366427
Q gi|254780933|r 125 SGGSILSQLKRLGASCDWS 143 (947)
Q Consensus 125 ~~~~~~~~~~~lG~~~Dw~ 143 (947)
T Consensus 52 ~~~~I~~dL~wLGl--~wD 68 (239)
T cd00808 52 AEEAILEDLKWLGI--DWD 68 (239)
T ss_pred HHHHHHHHHHHCCC--CCC
T ss_conf 99999999998188--877