HHsearch alignment for GI: 254780933 and conserved domain: cd00812

>cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00  E-value=0  Score=542.34  Aligned_cols=359  Identities=28%  Similarity=0.409  Sum_probs=255.7

Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH-----CCHH
Q ss_conf             08997284499998654378896779999987670898356778815454089999999976745998777-----7989
Q gi|254780933|r   38 VFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTRED-----IGRD  112 (947)
Q Consensus        38 ~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~-----~g~~  112 (947)
T Consensus         1 k~~ITta~PY~NG~~HiGH~~~~i~aDi~~Ry~Rm~G~~V~~~~G~DeHG~pI~~~A~~~-g~~~~~~~~~~~~~~~~~~   79 (376)
T cd00812           1 KFYILVMFPYPSGRLHVGHVRTYTIGDIIARYKRMKGYNVLFPMGFDAFGLPAENAADKI-GREDEDTIEPYRDVGVPDE   79 (376)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-CCCHHHHHHHHHHCCHHHH
T ss_conf             979985898889745468869899999999999955997046884565678999999996-8747765301111000188


Q ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHH
Q ss_conf             999--999999999999999999980836642798115886799999999999998894331332022037767801486
Q gi|254780933|r  113 AFI--EKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDL  190 (947)
Q Consensus       113 ~f~--~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~  190 (947)
T Consensus        80 ~~~~~~~p~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~vq~~f~~L~~~G~iy~~~~~~~y~~~~~~~----  155 (376)
T cd00812          80 EIEKFADPKYWTEYFIAKMKEQLKRMGFSIDWRREFTTTDPEYYKFTQWQFLKLKEKGLIYKGEAPVNWCKLLDQW----  155 (376)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCEE----
T ss_conf             7861279999999999999999998098737686643377789999999999999889889517555364677605----


Q ss_pred             HHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEE
Q ss_conf             86541468766999965304530001245555544245688716999826740101024444441000123111542332
Q gi|254780933|r  191 EVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATL  270 (947)
Q Consensus       191 Ev~~~~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~  270 (947)
T Consensus       156 ------------f~~~~--------------------------------------------------~~~~~~~~~~---  170 (376)
T cd00812         156 ------------FLKYS--------------------------------------------------TEWAERLLKD---  170 (376)
T ss_pred             ------------EECCC--------------------------------------------------HHHHHHHHHH---
T ss_conf             ------------74166--------------------------------------------------7889998740---


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             02486573210000342122320321247785565664304653111016777521366544455543465546555310
Q gi|254780933|r  271 PIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEF  350 (947)
Q Consensus       271 Pl~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (947)
T Consensus       171 -~~~--------------------------------------~~~~-------------------------------p--  178 (376)
T cd00812         171 -LEG--------------------------------------LDTW-------------------------------P--  178 (376)
T ss_pred             -HHC--------------------------------------CCCC-------------------------------C--
T ss_conf             -420--------------------------------------4678-------------------------------6--


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHH
Q ss_conf             01512334488899888876433321022322235666553244431222121454202333432002441121443113
Q gi|254780933|r  351 EGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKS  430 (947)
Q Consensus       351 ~G~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~  430 (947)
T Consensus       179 ---------~~~~~~--~~~~~~~----------------------~~~~~~~~~------~--------------~~--  203 (376)
T cd00812         179 ---------EEVKNM--QENWIGW----------------------LKGWACARR------Y--------------GL--  203 (376)
T ss_pred             ---------HHHHHH--HHHHHHH----------------------CCCCEEEEE------C--------------CC--
T ss_conf             ---------889999--9998730----------------------246525411------1--------------11--


Q ss_pred             HHHHHHCCCCCCCCCCC----CCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             56764101112321235----45631026983899887657623445420345567877655541002568888310188
Q gi|254780933|r  431 YYEWLENIQPWCISRQI----WWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKR  506 (947)
Q Consensus       431 ~~~wl~~~~DW~ISRqr----~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  506 (947)
T Consensus       204 -~~~~~~l~dw~isr~~~~~~~wg~~ip~~~~~~~~~~~~--------------------------------~~~~~~~~  250 (376)
T cd00812         204 -GTVLPWDRDWLIERLRDSTIYWGYYTPAHHCEKCGPVCP--------------------------------KCGKPAKR  250 (376)
T ss_pred             -CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEECC--------------------------------CCCCCCCC
T ss_conf             -540655544341344456666770021597567864146--------------------------------66755566


Q ss_pred             CCCEECCEEECCCCCCCEE------CHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHC
Q ss_conf             2410022020442333201------0111100012345553012455432101356777665301211337868520000
Q gi|254780933|r  507 DEDVLDTWFSSALWPFASL------GWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVY  580 (947)
Q Consensus       507 ~~DvlDtWfdSg~~p~~~l------~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~  580 (947)
T Consensus       251 ~~~~~~~w~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~fH~~~~~~~~~~l~~~---~~~~~p~~v~  326 (376)
T cd00812         251 ETDTMDEFFDS-SWYYLRYLDPKNSEAPFDREEFEYWYPVDLYIGGKEHAVNHLLYSRFNHKALFDE---GTKEPPKGLR  326 (376)
T ss_pred             CCCCCCCEEEE-EECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHC---CCCCCCCEEE
T ss_conf             54468865776-3014666784334476687999842886068813354201367999999999864---6777982668


Q ss_pred             CCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             144310001225543124565302332025403444543123355677543
Q gi|254780933|r  581 MHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL  631 (947)
Q Consensus       581 ~hG~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~f  631 (947)
T Consensus       327 ~hG~l~~-~G~KMSKS~Gn~v~p~~~l~~yg~D~lR~~Ll~~~p~~~D~~F  376 (376)
T cd00812         327 VQGMVLL-EGEKMSKSKGNVVTPDEAIKKYGADATRLYLLFAAPPESDANW  376 (376)
T ss_pred             ECCCEEC-CCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             7572966-9966377899884989999885954999999944995568998