HHsearch alignment for GI: 254780933 and conserved domain: cd00812
>cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=0 Score=542.34 Aligned_cols=359 Identities=28% Similarity=0.409 Sum_probs=255.7
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHH-----CCHH
Q ss_conf 08997284499998654378896779999987670898356778815454089999999976745998777-----7989
Q gi|254780933|r 38 VFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTRED-----IGRD 112 (947)
Q Consensus 38 ~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~-----~g~~ 112 (947)
T Consensus 1 k~~ITta~PY~NG~~HiGH~~~~i~aDi~~Ry~Rm~G~~V~~~~G~DeHG~pI~~~A~~~-g~~~~~~~~~~~~~~~~~~ 79 (376)
T cd00812 1 KFYILVMFPYPSGRLHVGHVRTYTIGDIIARYKRMKGYNVLFPMGFDAFGLPAENAADKI-GREDEDTIEPYRDVGVPDE 79 (376)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-CCCHHHHHHHHHHCCHHHH
T ss_conf 979985898889745468869899999999999955997046884565678999999996-8747765301111000188
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHH
Q ss_conf 999--999999999999999999980836642798115886799999999999998894331332022037767801486
Q gi|254780933|r 113 AFI--EKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDL 190 (947)
Q Consensus 113 ~f~--~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~ 190 (947)
T Consensus 80 ~~~~~~~p~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~vq~~f~~L~~~G~iy~~~~~~~y~~~~~~~---- 155 (376)
T cd00812 80 EIEKFADPKYWTEYFIAKMKEQLKRMGFSIDWRREFTTTDPEYYKFTQWQFLKLKEKGLIYKGEAPVNWCKLLDQW---- 155 (376)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCEE----
T ss_conf 7861279999999999999999998098737686643377789999999999999889889517555364677605----
Q ss_pred HHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEE
Q ss_conf 86541468766999965304530001245555544245688716999826740101024444441000123111542332
Q gi|254780933|r 191 EVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATL 270 (947)
Q Consensus 191 Ev~~~~~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~ 270 (947)
T Consensus 156 ------------f~~~~--------------------------------------------------~~~~~~~~~~--- 170 (376)
T cd00812 156 ------------FLKYS--------------------------------------------------TEWAERLLKD--- 170 (376)
T ss_pred ------------EECCC--------------------------------------------------HHHHHHHHHH---
T ss_conf ------------74166--------------------------------------------------7889998740---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02486573210000342122320321247785565664304653111016777521366544455543465546555310
Q gi|254780933|r 271 PIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEF 350 (947)
Q Consensus 271 Pl~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (947)
T Consensus 171 -~~~--------------------------------------~~~~-------------------------------p-- 178 (376)
T cd00812 171 -LEG--------------------------------------LDTW-------------------------------P-- 178 (376)
T ss_pred -HHC--------------------------------------CCCC-------------------------------C--
T ss_conf -420--------------------------------------4678-------------------------------6--
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCCHH
Q ss_conf 01512334488899888876433321022322235666553244431222121454202333432002441121443113
Q gi|254780933|r 351 EGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKS 430 (947)
Q Consensus 351 ~G~~v~~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~~~ 430 (947)
T Consensus 179 ---------~~~~~~--~~~~~~~----------------------~~~~~~~~~------~--------------~~-- 203 (376)
T cd00812 179 ---------EEVKNM--QENWIGW----------------------LKGWACARR------Y--------------GL-- 203 (376)
T ss_pred ---------HHHHHH--HHHHHHH----------------------CCCCEEEEE------C--------------CC--
T ss_conf ---------889999--9998730----------------------246525411------1--------------11--
Q ss_pred HHHHHHCCCCCCCCCCC----CCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 56764101112321235----45631026983899887657623445420345567877655541002568888310188
Q gi|254780933|r 431 YYEWLENIQPWCISRQI----WWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKR 506 (947)
Q Consensus 431 ~~~wl~~~~DW~ISRqr----~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 506 (947)
T Consensus 204 -~~~~~~l~dw~isr~~~~~~~wg~~ip~~~~~~~~~~~~--------------------------------~~~~~~~~ 250 (376)
T cd00812 204 -GTVLPWDRDWLIERLRDSTIYWGYYTPAHHCEKCGPVCP--------------------------------KCGKPAKR 250 (376)
T ss_pred -CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEECC--------------------------------CCCCCCCC
T ss_conf -540655544341344456666770021597567864146--------------------------------66755566
Q ss_pred CCCEECCEEECCCCCCCEE------CHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHC
Q ss_conf 2410022020442333201------0111100012345553012455432101356777665301211337868520000
Q gi|254780933|r 507 DEDVLDTWFSSALWPFASL------GWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVY 580 (947)
Q Consensus 507 ~~DvlDtWfdSg~~p~~~l------~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~ 580 (947)
T Consensus 251 ~~~~~~~w~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~fH~~~~~~~~~~l~~~---~~~~~p~~v~ 326 (376)
T cd00812 251 ETDTMDEFFDS-SWYYLRYLDPKNSEAPFDREEFEYWYPVDLYIGGKEHAVNHLLYSRFNHKALFDE---GTKEPPKGLR 326 (376)
T ss_pred CCCCCCCEEEE-EECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHC---CCCCCCCEEE
T ss_conf 54468865776-3014666784334476687999842886068813354201367999999999864---6777982668
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 144310001225543124565302332025403444543123355677543
Q gi|254780933|r 581 MHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL 631 (947)
Q Consensus 581 ~hG~vld~~G~KMSKS~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~f 631 (947)
T Consensus 327 ~hG~l~~-~G~KMSKS~Gn~v~p~~~l~~yg~D~lR~~Ll~~~p~~~D~~F 376 (376)
T cd00812 327 VQGMVLL-EGEKMSKSKGNVVTPDEAIKKYGADATRLYLLFAAPPESDANW 376 (376)
T ss_pred ECCCEEC-CCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 7572966-9966377899884989999885954999999944995568998