HHsearch alignment for GI: 254780933 and conserved domain: cd00818
>cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) . This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=0 Score=680.76 Aligned_cols=338 Identities=34% Similarity=0.642 Sum_probs=312.7
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 80899728449999865437889677999998767089835677881545408999999997674599877779899999
Q gi|254780933|r 37 GVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIE 116 (947)
Q Consensus 37 ~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~ 116 (947)
T Consensus 1 p~~~~~~~pPYaNg~pHiGHa~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~pIe~~a~k~~~~~~~~~~~~~~~~~f~~ 80 (339)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFRA 80 (339)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHH
T ss_conf 95599589988578734558899999999999998069988778851440399999999964898730476559999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 99999999999999999980836642798115886799999999999998894331332022037767801486865414
Q gi|254780933|r 117 KVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKE 196 (947)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~ 196 (947)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~----------------- 143 (339)
T cd00818 81 KCREFALRYIDEQEETFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLYEKGLLYRGYKVVPW----------------- 143 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEECC-----------------
T ss_conf 999999999999999999837351477771216889999999999999988886267605368-----------------
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCC
Q ss_conf 68766999965304530001245555544245688716999826740101024444441000123111542332024865
Q gi|254780933|r 197 VDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRL 276 (947)
Q Consensus 197 ~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~ 276 (947)
T Consensus 144 -------------------------------------------------------------------------------- 143 (339)
T cd00818 144 -------------------------------------------------------------------------------- 143 (339)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 73210000342122320321247785565664304653111016777521366544455543465546555310015123
Q gi|254780933|r 277 IPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCF 356 (947)
Q Consensus 277 ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 356 (947)
T Consensus 144 -------------------------------------------------------------------------------- 143 (339)
T cd00818 144 -------------------------------------------------------------------------------- 143 (339)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCC-HHHHHHH
Q ss_conf 344888998888764333210223222356665532444312221214542023334320024411214431-1356764
Q gi|254780933|r 357 AARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWD-KSYYEWL 435 (947)
Q Consensus 357 ~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~-~~~~~wl 435 (947)
T Consensus 144 ----------------------------------p~~~~~~~~~F~~l~~~~~~ll~~~~--~~~~~p~~~~~~~l~~~~ 187 (339)
T cd00818 144 ----------------------------------PLIYRATPQWFIRVEKLKDRLLEAND--KVNWIPEWVKEGRFGNWL 187 (339)
T ss_pred ----------------------------------CCCCEECCCEEEECHHHHHHHHHHHH--CCCEECCHHHHHHHHHHH
T ss_conf ----------------------------------76005815679986899999998775--387378610664999997
Q ss_pred HCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEE
Q ss_conf 10111232123545631026983899887657623445420345567877655541002568888310188241002202
Q gi|254780933|r 436 ENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWF 515 (947)
Q Consensus 436 ~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWf 515 (947)
T Consensus 188 ~~l~Dw~ISR~~~WGipvP~w~~~~~~~~~--------------------------------------~~~~~dv~yVWf 229 (339)
T cd00818 188 ENRRDWCISRQRYWGTPIPVWYSEDCGEVL--------------------------------------VRRVPDVLDVWF 229 (339)
T ss_pred HCCCCCEEEECCCCCCCCCEEECCCCCCCC--------------------------------------CCCCCCHHHHHH
T ss_conf 168565044026667534635648998321--------------------------------------003650177776
Q ss_pred ECCCCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHH
Q ss_conf 04423332010111100012345553012455432101356777665301211337868520000144310001225543
Q gi|254780933|r 516 SSALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSK 595 (947)
Q Consensus 516 dSg~~p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSK 595 (947)
T Consensus 230 Da~~~~~~~~~~~~~~~~~~~~~p~~~~~~GkDi~~~~f~~~~~~~~~~~------~~~P~~~v~~hg~~l~~~G~KMSK 303 (339)
T cd00818 230 DSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALF------GKAPYKNVIVHGFVLDEDGRKMSK 303 (339)
T ss_pred HCCCCHHHHCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC------CCCCCCEEEECCEEECCCCCCCCC
T ss_conf 35624898728986431341387660566063312337999999878854------899852148898499999866278
Q ss_pred HCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 124565302332025403444543123355677543
Q gi|254780933|r 596 SKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL 631 (947)
Q Consensus 596 S~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~f 631 (947)
T Consensus 304 S~GnvI~p~~~l~~y~~D~lRyyl~~~~~~~~D~~F 339 (339)
T cd00818 304 SLGNVVDPQEVIDKYGADALRLWVASSDVYAEDLRF 339 (339)
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 899878989999876947999999916888889999