HHsearch alignment for GI: 254780933 and conserved domain: cd00818

>cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) . This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00  E-value=0  Score=680.76  Aligned_cols=338  Identities=34%  Similarity=0.642  Sum_probs=312.7

Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf             80899728449999865437889677999998767089835677881545408999999997674599877779899999
Q gi|254780933|r   37 GVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIE  116 (947)
Q Consensus        37 ~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f~~  116 (947)
T Consensus         1 p~~~~~~~pPYaNg~pHiGHa~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~pIe~~a~k~~~~~~~~~~~~~~~~~f~~   80 (339)
T cd00818           1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFRA   80 (339)
T ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHH
T ss_conf             95599589988578734558899999999999998069988778851440399999999964898730476559999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf             99999999999999999980836642798115886799999999999998894331332022037767801486865414
Q gi|254780933|r  117 KVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKE  196 (947)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~~v~w~p~~~T~ls~~Ev~~~~  196 (947)
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~-----------------  143 (339)
T cd00818          81 KCREFALRYIDEQEETFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLYEKGLLYRGYKVVPW-----------------  143 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEECC-----------------
T ss_conf             999999999999999999837351477771216889999999999999988886267605368-----------------


Q ss_pred             CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHCCHHHHHHCCCEEEECCCCCC
Q ss_conf             68766999965304530001245555544245688716999826740101024444441000123111542332024865
Q gi|254780933|r  197 VDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRL  276 (947)
Q Consensus       197 ~~~~~~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~a~~v~P~d~~y~~l~G~~~~~Pl~~~~  276 (947)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (339)
T cd00818         144 --------------------------------------------------------------------------------  143 (339)
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             73210000342122320321247785565664304653111016777521366544455543465546555310015123
Q gi|254780933|r  277 IPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCF  356 (947)
Q Consensus       277 ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~  356 (947)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (339)
T cd00818         144 --------------------------------------------------------------------------------  143 (339)
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHEECCCCCHHHHHHHHHCCCCCEECCCCC-HHHHHHH
Q ss_conf             344888998888764333210223222356665532444312221214542023334320024411214431-1356764
Q gi|254780933|r  357 AARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWD-KSYYEWL  435 (947)
Q Consensus       357 ~a~~~ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~QWfi~~~~~~~~~l~~~~~~~i~~~P~~~~-~~~~~wl  435 (947)
T Consensus       144 ----------------------------------p~~~~~~~~~F~~l~~~~~~ll~~~~--~~~~~p~~~~~~~l~~~~  187 (339)
T cd00818         144 ----------------------------------PLIYRATPQWFIRVEKLKDRLLEAND--KVNWIPEWVKEGRFGNWL  187 (339)
T ss_pred             ----------------------------------CCCCEECCCEEEECHHHHHHHHHHHH--CCCEECCHHHHHHHHHHH
T ss_conf             ----------------------------------76005815679986899999998775--387378610664999997


Q ss_pred             HCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCEE
Q ss_conf             10111232123545631026983899887657623445420345567877655541002568888310188241002202
Q gi|254780933|r  436 ENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWF  515 (947)
Q Consensus       436 ~~~~DW~ISRqr~WG~pIPvw~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~DvlDtWf  515 (947)
T Consensus       188 ~~l~Dw~ISR~~~WGipvP~w~~~~~~~~~--------------------------------------~~~~~dv~yVWf  229 (339)
T cd00818         188 ENRRDWCISRQRYWGTPIPVWYSEDCGEVL--------------------------------------VRRVPDVLDVWF  229 (339)
T ss_pred             HCCCCCEEEECCCCCCCCCEEECCCCCCCC--------------------------------------CCCCCCHHHHHH
T ss_conf             168565044026667534635648998321--------------------------------------003650177776


Q ss_pred             ECCCCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHH
Q ss_conf             04423332010111100012345553012455432101356777665301211337868520000144310001225543
Q gi|254780933|r  516 SSALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSK  595 (947)
Q Consensus       516 dSg~~p~~~l~~p~~~~e~~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~~~~~~~Pfk~v~~hG~vld~~G~KMSK  595 (947)
T Consensus       230 Da~~~~~~~~~~~~~~~~~~~~~p~~~~~~GkDi~~~~f~~~~~~~~~~~------~~~P~~~v~~hg~~l~~~G~KMSK  303 (339)
T cd00818         230 DSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALF------GKAPYKNVIVHGFVLDEDGRKMSK  303 (339)
T ss_pred             HCCCCHHHHCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC------CCCCCCEEEECCEEECCCCCCCCC
T ss_conf             35624898728986431341387660566063312337999999878854------899852148898499999866278


Q ss_pred             HCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             124565302332025403444543123355677543
Q gi|254780933|r  596 SKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL  631 (947)
Q Consensus       596 S~GNvidp~e~i~~yGaDalR~~l~~~~~~~~D~~f  631 (947)
T Consensus       304 S~GnvI~p~~~l~~y~~D~lRyyl~~~~~~~~D~~F  339 (339)
T cd00818         304 SLGNVVDPQEVIDKYGADALRLWVASSDVYAEDLRF  339 (339)
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             899878989999876947999999916888889999