HHsearch alignment for GI: 254780933 and conserved domain: cd07958
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.78 E-value=2.9e-19 Score=159.28 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=88.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 34110111000012344433332024445776767743331555677999999998889987531001024577765310
Q gi|254780933|r 631 LDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWD 710 (947)
Q Consensus 631 fs~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~ 710 (947)
T Consensus 1 Wse~gIeg~~rFl~KlW~l~~~~~~----~~~~~~~~~~~~~~d~~i~~~l~~~i~~vt~~~e~~~fN~aia~l~ef~-N 75 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAE----ALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV-N 75 (117)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH----HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-H
T ss_conf 9800699999999999999998886----3134556544667449999999999999999998522059999999999-9
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 0136889864765305671444321000145676403456774489999999743
Q gi|254780933|r 711 ELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHV 765 (947)
Q Consensus 711 ~~~~~Yie~~K~~l~~~~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l 765 (947)
T Consensus 76 ~l~~-------~~--~~~----~~~~~~~~~~l~~ll~lL~P~~PHiaEElW~~L 117 (117)
T cd07958 76 ALYK-------YK--KKD----AQHAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred HHHH-------HH--CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9988-------46--144----114999999999999998842479999998539