HHsearch alignment for GI: 254780933 and conserved domain: cd07960

>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=100.00  E-value=2.5e-34  Score=269.33  Aligned_cols=172  Identities=25%  Similarity=0.368  Sum_probs=148.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             411011100001234443333202444577676--774333155567799999999888998753100102457776531
Q gi|254780933|r  632 DLERIAGYRNFITKFWNAIRFSKMKNARHSVSF--VPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVW  709 (947)
Q Consensus       632 s~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~--~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~  709 (947)
T Consensus         2 s~~iL~~~~e~~rKiwNt~RF~l~nl~~~~~~~~~~~~~~l~~lD~wiLs~l~~~~~~v~~~~~~y~f~~~~~~l~~F~~   81 (180)
T cd07960           2 SDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCT   81 (180)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf             88999999999999999999999863799943345892228798999999999999999999983899999999999940


Q ss_pred             CCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC-
Q ss_conf             001368898647653056--71444321000145676403456774489999999743566676756536635787877-
Q gi|254780933|r  710 DELCDWYVEFIKSILNQK--DSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLI-  786 (947)
Q Consensus       710 ~~~~~~Yie~~K~~l~~~--~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~-  786 (947)
T Consensus        82 ~~ls~~Yle~~K~rly~~~~~~~~r~~~~~~L~~vl~~~l~llaPi~Pf~tEeiw~~l~~~~---~~~Si~l~~~P~~~~  158 (180)
T cd07960          82 VDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEK---KEESVFLEDWPELPE  158 (180)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC---CCCCEEECCCCCCCC
T ss_conf             21035999997797615888838999999999999999898744000453999998756689---999757148999980


Q ss_pred             -CCCHHHHHHHHHHHHHHHHH
Q ss_conf             -47789899999999999999
Q gi|254780933|r  787 -IDDSESIEEVNWIIDLISKV  806 (947)
Q Consensus       787 -~~d~~~~~~~~~~~~ii~~i  806 (947)
T Consensus       159 ~~~d~~le~~~~~l~~ir~~v  179 (180)
T cd07960         159 EWKDEELEEKWEKLLALRDEV  179 (180)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
T ss_conf             108999999999999999875