HHsearch alignment for GI: 254780933 and conserved domain: cd07960
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=100.00 E-value=2.5e-34 Score=269.33 Aligned_cols=172 Identities=25% Similarity=0.368 Sum_probs=148.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 411011100001234443333202444577676--774333155567799999999888998753100102457776531
Q gi|254780933|r 632 DLERIAGYRNFITKFWNAIRFSKMKNARHSVSF--VPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVW 709 (947)
Q Consensus 632 s~~~i~~~r~f~nKLwNa~rf~~~~~~~~~~~~--~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~~F~~ 709 (947)
T Consensus 2 s~~iL~~~~e~~rKiwNt~RF~l~nl~~~~~~~~~~~~~~l~~lD~wiLs~l~~~~~~v~~~~~~y~f~~~~~~l~~F~~ 81 (180)
T cd07960 2 SDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCT 81 (180)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 88999999999999999999999863799943345892228798999999999999999999983899999999999940
Q ss_pred CCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC-
Q ss_conf 001368898647653056--71444321000145676403456774489999999743566676756536635787877-
Q gi|254780933|r 710 DELCDWYVEFIKSILNQK--DSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLI- 786 (947)
Q Consensus 710 ~~~~~~Yie~~K~~l~~~--~~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~~~- 786 (947)
T Consensus 82 ~~ls~~Yle~~K~rly~~~~~~~~r~~~~~~L~~vl~~~l~llaPi~Pf~tEeiw~~l~~~~---~~~Si~l~~~P~~~~ 158 (180)
T cd07960 82 VDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEK---KEESVFLEDWPELPE 158 (180)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC---CCCCEEECCCCCCCC
T ss_conf 21035999997797615888838999999999999999898744000453999998756689---999757148999980
Q ss_pred -CCCHHHHHHHHHHHHHHHHH
Q ss_conf -47789899999999999999
Q gi|254780933|r 787 -IDDSESIEEVNWIIDLISKV 806 (947)
Q Consensus 787 -~~d~~~~~~~~~~~~ii~~i 806 (947)
T Consensus 159 ~~~d~~le~~~~~l~~ir~~v 179 (180)
T cd07960 159 EWKDEELEEKWEKLLALRDEV 179 (180)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
T ss_conf 108999999999999999875