HHsearch alignment for GI: 254780933 and conserved domain: cd07961
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=100.00 E-value=1.6e-37 Score=292.73 Aligned_cols=175 Identities=22% Similarity=0.408 Sum_probs=151.3
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 341101-110000123444333320244457----767677433315556779999999988899875310010245777
Q gi|254780933|r 631 LDLERI-AGYRNFITKFWNAIRFSKMKNARH----SVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLY 705 (947)
Q Consensus 631 fs~~~i-~~~r~f~nKLwNa~rf~~~~~~~~----~~~~~~~~~~~~~Drwils~l~~~i~~v~~~~e~~~f~~a~~~i~ 705 (947)
T Consensus 1 F~e~~v~e~~R~f~nklwNa~RF~~~~~~~~~~~~~~~~~~~~~~~~~D~WIls~l~~~~~~v~~~~~~y~f~~a~~~l~ 80 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL 80 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 98889999983589999989999996221017995434556010558899999999999999999998011999999999
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCC
Q ss_conf 65310013688986476530567-14443210001456764034567744899999997435666767565366357878
Q gi|254780933|r 706 RFVWDELCDWYVEFIKSILNQKD-SELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPS 784 (947)
Q Consensus 706 ~F~~~~~~~~Yie~~K~~l~~~~-~~~~~~~~~~l~~vl~~~l~ll~P~~PfitEeiw~~l~~~~~~~~~~si~~~~wP~ 784 (947)
T Consensus 81 ~F~-~~l~~wYie~~K~rl~~~~~~~~~~~a~~~L~~vL~~~l~ll~P~~PFitEeiwq~l~~~~~-~~~eSVhl~~~P~ 158 (183)
T cd07961 81 EFI-DELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELG-DAPESVHLLDWPE 158 (183)
T ss_pred HHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC-CCCCCEECCCCCC
T ss_conf 999-99989999998899970566388899999999999999997576402439999998602468-9888032006899
Q ss_pred CC--CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 77--477898999999999999999
Q gi|254780933|r 785 LI--IDDSESIEEVNWIIDLISKVR 807 (947)
Q Consensus 785 ~~--~~d~~~~~~~~~~~~ii~~iR 807 (947)
T Consensus 159 ~~~~~~d~~le~~~~~l~~ii~~iR 183 (183)
T cd07961 159 VDESLIDEELEEAMELVREIVELGR 183 (183)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 8810269999999999999999759