HHsearch alignment for GI: 254780933 and conserved domain: pfam01406
>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases.
Probab=100.00 E-value=7.5e-34 Score=265.84 Aligned_cols=119 Identities=13% Similarity=0.105 Sum_probs=96.3
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHH
Q ss_conf 99808997284499998654378896779999987670898356778815454089999999976745998777798999
Q gi|254780933|r 35 GSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAF 114 (947)
Q Consensus 35 ~~~~f~~~~ppP~~nG~lHiGH~~~~t~~Di~~Ry~rm~G~~Vl~~~G~D~~GlPiE~~vek~l~~~~~~~~~~~g~~~f 114 (947)
T Consensus 8 ~~v~~YicgPt~Y--~~pHIGHa~t~I~~Dvi~R~~r~~G~~V~fv~g~ddhgdKI~~~A~~~-----g~~p-------- 72 (301)
T pfam01406 8 GKVNMYVCGPTVY--DDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQQ-----GESF-------- 72 (301)
T ss_pred CEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH-----CCCH--------
T ss_conf 9378997899068--997522336899999999999974994699967786317999999980-----9865--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 9999999999999999999980836642798115886799999999999998894331332
Q gi|254780933|r 115 IEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKR 175 (947)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~y~T~d~~y~~~v~~~F~~L~~~gliy~~~~ 175 (947)
T Consensus 73 ----~e~~d~~~~~F~~~~~~L~I~~~d~~-~rtTe--hi~~v~~~i~~L~~kG~~Y~~~~ 126 (301)
T pfam01406 73 ----RELAARFITAYTKDMDALNVLPPDLE-PRVTE--HIDEIIEFIERLIKKGYAYVSDN 126 (301)
T ss_pred ----HHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCC--CHHHHHHHHHHHHHCCCEEECCC
T ss_conf ----37999999999988998498289868-77543--57999999999997797687269