RPSBLAST alignment for GI: 254780933 and conserved domain: TIGR00396
>gnl|CDD|161857 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. Length = 842
Score = 137 bits (346), Expect = 2e-32
Identities = 114/441 (25%), Positives = 178/441 (40%), Gaps = 99/441 (22%)
Query: 7 YDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAM-PPPNVTGSLHMGHAFNTTIQDI 65
Y+ IE+K +KW F+ + + M P P +G+LHMGH N TI D+
Sbjct: 1 YNHIEIEEKWQQKWKENKVFKFTDDSNK-PKYYILDMFPYP--SGALHMGHVRNYTITDV 57
Query: 66 MIRFERMRGKNVLWQPGTDHAGI-ATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKE 124
+ R+ RM+G NVL G D G+ A ++ + T E+I +
Sbjct: 58 LSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKW-TYENI--ANMKK-------- 106
Query: 125 SGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLK 184
QL+ LG S DW RE T D + F+ L++ GL Y + VNW P+
Sbjct: 107 -------QLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDG 159
Query: 185 TSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPI--------DW------- 229
T +++ +V DG W P+ + + +K A+ + W
Sbjct: 160 TVLANEQVDS---DGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEM 216
Query: 230 ---------------EVRDY---IIVSTTRPETMFGDVAIAVHPDDYRYKELI------- 264
++ D+ I V TTRP+T+FG +A+ P+ +++
Sbjct: 217 QRNWIGKSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVA 276
Query: 265 --------------------------GKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTP 298
G A P+ G IPI Y +G GAV P
Sbjct: 277 AFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLTGEKIPIWVANYVLASYGTGAVMGVP 336
Query: 299 AHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAA 358
AHD DFE A+++ L ++ P K + ++F E+ VL + EF GL+ A
Sbjct: 337 AHDERDFEFAQKYKLPIKVVIDPAGKN--LKTQAFTEDGVLVNSG-----EFNGLNSSEA 389
Query: 359 RSKIVSLLEKSNLLDKTDSYR 379
R I+++LEK + +YR
Sbjct: 390 REAIIAMLEKEGKGKRKVNYR 410