RPSBLAST alignment for GI: 254780933 and conserved domain: TIGR00396

>gnl|CDD|161857 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. Length = 842
 Score =  137 bits (346), Expect = 2e-32
 Identities = 114/441 (25%), Positives = 178/441 (40%), Gaps = 99/441 (22%)

Query: 7   YDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAM-PPPNVTGSLHMGHAFNTTIQDI 65
           Y+   IE+K  +KW     F+           + + M P P  +G+LHMGH  N TI D+
Sbjct: 1   YNHIEIEEKWQQKWKENKVFKFTDDSNK-PKYYILDMFPYP--SGALHMGHVRNYTITDV 57

Query: 66  MIRFERMRGKNVLWQPGTDHAGI-ATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKE 124
           + R+ RM+G NVL   G D  G+ A    ++  +      T E+I      +        
Sbjct: 58  LSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKW-TYENI--ANMKK-------- 106

Query: 125 SGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLK 184
                  QL+ LG S DW RE  T D       +  F+ L++ GL Y  +  VNW P+  
Sbjct: 107 -------QLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDG 159

Query: 185 TSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPI--------DW------- 229
           T +++ +V     DG  W    P+ +    +  +K    A+ +         W       
Sbjct: 160 TVLANEQVDS---DGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEM 216

Query: 230 ---------------EVRDY---IIVSTTRPETMFGDVAIAVHPDDYRYKELI------- 264
                          ++ D+   I V TTRP+T+FG   +A+ P+    +++        
Sbjct: 217 QRNWIGKSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVA 276

Query: 265 --------------------------GKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTP 298
                                     G  A  P+ G  IPI    Y    +G GAV   P
Sbjct: 277 AFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLTGEKIPIWVANYVLASYGTGAVMGVP 336

Query: 299 AHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAA 358
           AHD  DFE A+++ L    ++ P  K    + ++F E+ VL +       EF GL+   A
Sbjct: 337 AHDERDFEFAQKYKLPIKVVIDPAGKN--LKTQAFTEDGVLVNSG-----EFNGLNSSEA 389

Query: 359 RSKIVSLLEKSNLLDKTDSYR 379
           R  I+++LEK     +  +YR
Sbjct: 390 REAIIAMLEKEGKGKRKVNYR 410