RPSBLAST alignment for GI: 254780933 and conserved domain: TIGR00396
>gnl|CDD|161857 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. Length = 842
Score = 89.0 bits (221), Expect = 5e-18
Identities = 94/453 (20%), Positives = 171/453 (37%), Gaps = 94/453 (20%)
Query: 438 IQPWCISRQIWWGHQIPVWY--------SPDGKLFVENTEDAALRSAIDYYLSQDNDMTV 489
++ W SRQ +WG IP+ + P+ L V E + LS+ + V
Sbjct: 411 LRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEW-V 469
Query: 490 KVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAE------LKTYYPTSVL 543
V + R+ D +DT+ S+ W + P+ T + + + P +
Sbjct: 470 NV----TCPSCGKPALRETDTMDTFAGSS-WYYLRYLDPKNTDQPFDKEKAEYWLPVDLY 524
Query: 544 VTGFD--ILFFWVARM------------------------MMMGLYFMKDAEGKGIEPFH 577
+ G + IL AR M++G Y+ + + P
Sbjct: 525 IGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGK---SPPDE 581
Query: 578 IVYMHALVRDKNG--------QKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDI 629
+ +DK+G +KMSKSKGN +DP +++ ++GADALR Y M +
Sbjct: 582 LTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASL 641
Query: 630 NLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVT 689
+ + G R F+ + WN F + +++ + K + + + + VT
Sbjct: 642 EWNDSGLEGARRFLDRVWN--LFYNILGELDGKTYLTPTILEEAQKELRRDVHKFLKKVT 699
Query: 690 VGMENHR-FNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCK 748
+E FN + + + ++ K L E L F VL
Sbjct: 700 EDLEKLESFNTAISA------------MMILLNALYKAKKDALYLEYLKGFLTVLS---- 743
Query: 749 LLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWP----SLIIDDSESIEEVNWIIDLIS 804
P P + E+L+ + + + KQ A+WP + +++D +I ++ +
Sbjct: 744 ---PFAPHLAEELWEKLGSEPFIIKQ-----AKWPKVDETALVEDKVTI-----VLQVNG 790
Query: 805 KVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLE 837
K ++ +T + V A D V+K LE
Sbjct: 791 KFKAKKTVPKDADEEQV-EELAKQDPEVKKYLE 822