RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (947 letters)



>gnl|CDD|30871 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 877

 Score = 1035 bits (2679), Expect = 0.0
 Identities = 421/949 (44%), Positives = 585/949 (61%), Gaps = 81/949 (8%)

Query: 4   DKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQ 63
            KTYD   IE+K  +KW     F+ D  P      F I  PPPNVTGSLHMGHA N T+Q
Sbjct: 2   PKTYDPKEIEEKWYKKWEESGYFKPD--PNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQ 59

Query: 64  DIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKK 123
           DI+ R++RMRG NVLW PGTDHAGIATQ+ VE +L A+  +TR D+GR+ F++K WEWK+
Sbjct: 60  DILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEG-ITRHDLGREEFLKKCWEWKE 118

Query: 124 ESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSL 183
           ESGG+I  QL+RLG S DWSRERFTMD G+S AV+ AFV LY+ GLIYR +R+VNW P  
Sbjct: 119 ESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKC 178

Query: 184 KTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPE 243
           +T++SD+EV  KEV+G L+Y++YPL +G                      Y++V+TTRPE
Sbjct: 179 RTAISDIEVEYKEVEGKLYYIKYPLADGD--------------------GYLVVATTRPE 218

Query: 244 TMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFN 303
           T+ GD A+AVHPDD RYK L+GK   LP+VGR IPI++D Y DPEFG GAVK+TPAHDFN
Sbjct: 219 TLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDFN 278

Query: 304 DFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIV 363
           D+E+ KRH L  INI+  + +I                       EF GLD F AR KIV
Sbjct: 279 DYEVGKRHNLPLINIIDEDGRI-----------------NEEAAGEFAGLDRFEARKKIV 321

Query: 364 SLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFI 423
             LE+  LL K + ++H V HCER G  IEP +++QW++    LA+ A+ + K+G + F+
Sbjct: 322 EDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFV 381

Query: 424 PQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPD-GKLFVENTEDAALRSAIDYYLS 482
           P+  +K Y +W+ENI+ WCISRQ+WWGH+IPVWY  + G + V   E     +A      
Sbjct: 382 PERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEPEDPAAAEKCPKE 441

Query: 483 QDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSV 542
           +                    L++DEDVLDTWFSS+LWPF++LGWPE+T +LK +YPT +
Sbjct: 442 E--------------------LEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDL 481

Query: 543 LVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVD 602
           LVTG DI+FFWVARM+M GL+   +       PF  VY+H LVRD+ G+KMSKSKGNV+D
Sbjct: 482 LVTGHDIIFFWVARMIMRGLHLTGEV------PFKDVYIHGLVRDEQGRKMSKSKGNVID 535

Query: 603 PIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSV 662
           P+DVID+YGADALRF  + +A  GRDIN D +R+ GYRNF+ K WNA RF  M       
Sbjct: 536 PLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGP 595

Query: 663 SFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKS 722
             +      + ++WI+ RL   + +VT  ++N+RF++ +  LY F+W++ CDWY+E  K 
Sbjct: 596 DDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKP 655

Query: 723 ILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQW 782
            L   + E      +   YVL  + +LLHP +PF+TE+++  +   +       +  A W
Sbjct: 656 RLYGGEEEKR-AARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGTE------SIHLASW 708

Query: 783 PSLIID--DSESIEEVNWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHK 840
           P +  +  D E+ +E   + ++IS +R++R EMN+   A + +V       +  RLE ++
Sbjct: 709 PEVDEELIDEEAEKEFELLKEIISAIRNLRAEMNLSPSAPLKVVLVG-SEELEDRLEANE 767

Query: 841 CIIDRLSSGNIIF----ADCPPDRSIQIILDGMVLFLAIGDFVDFVKERSRLKKSLEKVL 896
             I  L++   +         P   +  ++ G  LFL +   +D   E +RL+K LEK+ 
Sbjct: 768 DDIKGLANLEELEILSPDPEEPPVEVTAVVGGAELFLPLAGLIDLAAELARLEKELEKLE 827

Query: 897 DELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIR 945
            E+  I+KKL N  FV KAP  +++ EKE+ ++ + K   LE  L  ++
Sbjct: 828 KEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEERLAVLK 876


>gnl|CDD|35653 KOG0432, KOG0432, KOG0432, Valyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 995

 Score =  839 bits (2170), Expect = 0.0
 Identities = 374/996 (37%), Positives = 549/996 (55%), Gaps = 94/996 (9%)

Query: 3   IDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTI 62
           +   Y  A++E    + W     F+ +  P  G GVF I +PPPNVTGSLH+GHA    I
Sbjct: 42  LPAAYSPAYVESAWYKWWEKQGFFKPEYGPNPG-GVFVIPLPPPNVTGSLHIGHALTVAI 100

Query: 63  QDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWK 122
           QD + R+ RM G  VLW PGTDHAGIATQ+ VE +L  +   TR D+GR+ F+++VWEWK
Sbjct: 101 QDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWK 160

Query: 123 KESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPS 182
           +E GG I +QLKRLGAS DW RE FTMD  +S AV  AFV L+++GLIYR  R+VNW P+
Sbjct: 161 EEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPA 220

Query: 183 LKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFD---DDAKPIDWEVRDYIIVST 239
           L++++SD+EV   E+ G    +  P      Y   ++F      A P++    + I+V+T
Sbjct: 221 LRSAISDIEVESVEIPGRT-LLSVP-----GYDTKVEFGVLYSFAYPVEGS-DEEIVVAT 273

Query: 240 TRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPA 299
           TRPET+ GDVA+AVHPDD RYK L GK+   P  GR +PI+ D+  D EFG GAVK+TPA
Sbjct: 274 TRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKLPIICDIAVDMEFGTGAVKITPA 333

Query: 300 HDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAAR 359
           HD ND+E+ KRH L FINI T +  +                   N+  EF+G+  F AR
Sbjct: 334 HDPNDYEVGKRHNLEFINIFTDDGLL------------------NNVCGEFKGMKRFEAR 375

Query: 360 SKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGC 419
            K+V  L++  L    +++  ++P C RSG  IEP +  QW++  K +A+ A+++ ++G 
Sbjct: 376 EKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGK 435

Query: 420 LSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDY 479
           L  +P+  +K +Y WLENI+ WCISRQ+WWGH+IP ++        E           DY
Sbjct: 436 LEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEE----------DY 485

Query: 480 YLSQDNDMTVKVRKMIKDGNISDL-LKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYY 538
           ++   ++   + +   K G   +  L++D DVLDTWFSS LWPF++LGWPE+T + K +Y
Sbjct: 486 WVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFY 545

Query: 539 PTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKG 598
           P S+L TG DILFFWVARM+M+GL         G  PF  V +H LVRD +G+KMSKS G
Sbjct: 546 PLSLLETGHDILFFWVARMVMLGLKLT------GELPFKEVLLHGLVRDAHGRKMSKSLG 599

Query: 599 NVVDPIDVID-------------------------------------QYGADALRFYFSI 621
           NV+DP+DVID                                     + G DALRF    
Sbjct: 600 NVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCS 659

Query: 622 MAVQGRDINLDLERIAGYRNFITKFWNAIRFSKM---KNARHSVSFVPQDVKWIVNKWII 678
              QGRDINLD+ R+ GYR+F  K WNA RF+     +N   S +      + +V++WI+
Sbjct: 660 YTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWIL 719

Query: 679 KRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSC 738
            RLA  + +V   +E   F+  ++ LY F   +LCD Y+E  K +L      L  E    
Sbjct: 720 SRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDSEALAYEARRV 779

Query: 739 FSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLII--DDSESIEEV 796
               L N  +LLHP +PF+TE+L+  +  +        +  + +PS      + E     
Sbjct: 780 LYRCLDNGLRLLHPFMPFITEELWQRLPRRKGSKPAS-ISVSPYPSSNELWRNEELESAF 838

Query: 797 NWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHKCIIDRLSSGNIIFADC 856
             ++ +   +RS+R E N+  K    +  A+ D   +  L+     I  L++  ++    
Sbjct: 839 ELVLAITRAIRSLRAEYNLSPKPRGSVFIASSDEEDKSILKEFLDEISTLTNLELVSISS 898

Query: 857 PPDRSIQ-----IILDGMVLFLAIGDFVDFVKERSRLKKSLEKVLDELSSIKKKLENNQF 911
           P +   Q     +      ++L +   VD   E  +L K LEK+  +L  ++ ++ ++ +
Sbjct: 899 PAEEDAQGCALSVASSDCQVYLPLKGLVDPDSEIQKLAKKLEKLQKQLDKLQARISSSDY 958

Query: 912 VEKAPPSILQAEKERFSKVEKKRISLENSLERIRML 947
            EKAP  + +  KE+  ++E +  +L+ +L  ++ L
Sbjct: 959 QEKAPLEVKEKNKEKLKELEAEIENLKAALANLKSL 994


>gnl|CDD|143905 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
           Other tRNA synthetase sub-families are too dissimilar to
           be included.
          Length = 606

 Score =  636 bits (1643), Expect = 0.0
 Identities = 256/651 (39%), Positives = 347/651 (53%), Gaps = 84/651 (12%)

Query: 18  EKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNV 77
           + W+    F+  +    G   F I   PPN TG LH+GHA N T++DI+IR++RM+G +V
Sbjct: 4   QFWDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDV 63

Query: 78  LWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLG 137
           LW PG DH G+ T+  VE +L  +    R  +GR+ F EK  EWK E    I SQ KRLG
Sbjct: 64  LWVPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLG 123

Query: 138 ASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEV 197
            S DW RE FT+D G+  AV   FV L+  GLIYR K+ VNW P+L T++S+ EV  K+V
Sbjct: 124 VSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEYKDV 183

Query: 198 DGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPD- 256
            G   +V +PL             D            +++ TT P T+ G+ A+AV+P+ 
Sbjct: 184 KGPSIHVAFPL------------ADGKGA-------SLVIWTTTPWTLPGNTAVAVNPEF 224

Query: 257 ----------------------------------DYRYKELIGKYATLPIVGRLIPIVSD 282
                                             D+R KELIGK    P V R IPI++D
Sbjct: 225 NYVKIRVTGEYYILAEALLKSLYKKKKEDGEILEDFRGKELIGKKYIHPFVNREIPIIAD 284

Query: 283 VYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDE 342
            Y D EFG GAV + PAH  +D+E+ KRH L FIN +         ++ ++ E       
Sbjct: 285 DYVDMEFGTGAVHIAPAHGEDDYEVGKRHNLEFINPVD--------DDGTYNEE------ 330

Query: 343 ARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYL 402
                 EF+GL  F AR KIV LL +  LL K +   H  PHC RSG  I    T QW++
Sbjct: 331 ----APEFQGLKRFKARKKIVELLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFV 386

Query: 403 DAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGK 462
             K LAE+A+++ +   + F+P+  +K Y  WLENIQ WCISRQ WWGH IP WYS D  
Sbjct: 387 RMKNLAEAALKAVEK--VQFVPKWGEKRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTG 444

Query: 463 LFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPF 522
                     L +  +     +  +    + ++  G     L++DEDVLDTWFSS  WPF
Sbjct: 445 EVYVRGSLKELVAGREEEEGIEAWLHRDAKDLLGKGA--GTLEQDEDVLDTWFSSGSWPF 502

Query: 523 ASLGWPEQTA-ELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYM 581
           ++LG+P     E K ++P  +L+ G D    W  RM+++G          G  P+  V +
Sbjct: 503 STLGYPFTNTPEFKRFFPADMLLEGSDQTRGWFYRMIVLGTAL------TGSAPYKNVLV 556

Query: 582 HALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLD 632
           H LVRD+ G+KMSKS GNV+DP+DVID+YGADALR +    +  GRDIN  
Sbjct: 557 HGLVRDEQGRKMSKSLGNVIDPLDVIDKYGADALRLWL-ASSDYGRDINFS 606


>gnl|CDD|30409 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 933

 Score =  347 bits (891), Expect = 1e-95
 Identities = 233/906 (25%), Positives = 373/906 (41%), Gaps = 148/906 (16%)

Query: 7   YDFAFIEQKSVEKWNSVDAFR-IDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDI 65
            +    E K ++ W   D +  I      G   F +   PP   G++H+GHA N  ++DI
Sbjct: 18  ANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDI 77

Query: 66  MIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEK----VWEW 121
           ++R++ M+G +V + PG D  G+  ++ VE +L        E  G + F EK      E 
Sbjct: 78  IVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKL-GIGKKDIESFGVEEFREKCREFALEQ 136

Query: 122 KKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDP 181
             E       Q KRLG   DW     TMD     +V  AF  LY+ GL+YR  + V W P
Sbjct: 137 VDEQ----KEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSP 192

Query: 182 SLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTR 241
             +T++++ EV   +V     YV++P+ +          D++A         Y+++ TT 
Sbjct: 193 RCETALAEAEVEYGDVKDPSIYVKFPVKDE-------GLDENA---------YLVIWTTT 236

Query: 242 PETMFGDVAIAVHPD------------------------------------DYRYKELIG 265
           P T+  ++AIAVHPD                                     ++  EL G
Sbjct: 237 PWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEG 296

Query: 266 KYATLPIVG----RLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTP 321
                P       R  P++   +   + G G V   P H   D+E+ K++GL  + +L P
Sbjct: 297 LRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGL--LEVLNP 354

Query: 322 EAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHI 381
                + +N  + E             ++EGL    A  KI+  L++   L K++   H 
Sbjct: 355 -----VDDNGRYTEEA----------PKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHS 399

Query: 382 VPHCERSGVTIEPCI---TEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENI 438
            PHC R+     P I   T QW++    L +  ++      ++++P      +   +EN 
Sbjct: 400 YPHCWRTK---TPLIYRATPQWFVSVDKLRDKMLKEINK--VNWVPDWGKNRFGNMVENR 454

Query: 439 QPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDG 498
             WCISRQ +WG  IPVWY  +    +  TE+              +D     R  I + 
Sbjct: 455 PDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDW---HRPDIDEL 511

Query: 499 NISDL-----LKRDEDVLDTWFSSALWPFASLG------WPEQTAELKTYYPTSVLVTGF 547
                      +R  DVLD WF S   P+A L       +P   A+          + G 
Sbjct: 512 LPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPRENLKFPALFADF--------YLEGS 563

Query: 548 DILFFWVARMMMMG-LYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDV 606
           D    W    ++     F       G  P+  V  H  V D+ G+KMSKS GNVVDP DV
Sbjct: 564 DQTRGWFYSSLLTSTALF-------GRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDV 616

Query: 607 IDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKM--KNARHSVSF 664
           ID+YGAD LR +    +    D+    E +   R    K  N  RF      +       
Sbjct: 617 IDKYGADILRLWV-ASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDA 675

Query: 665 VPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSIL 724
           V  +    +++WI+ RL +++ +V    EN+ F+ V   L  FV ++L +WY++ IK  L
Sbjct: 676 VLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRL 735

Query: 725 --NQKDSELVSETLSCFS---YVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCH 779
                DS    +  +  +   ++L  + +LL PI+PF  E+++ ++  +   +   L   
Sbjct: 736 YTEAADSP---DRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGERKEESVHL--- 789

Query: 780 AQWPSLIIDDSESIEEVNWIIDLISKVRSIRTEMNVPLKAVVP--LVFANIDAHVRKRLE 837
             WP           EV+  +  +    + R E  + L+  V   L  A ++  +   L 
Sbjct: 790 EDWP-----------EVDEELIDVEAALAARWEALLKLRDPVNKALEAARLEKVIGSSLN 838

Query: 838 CHKCII 843
               I 
Sbjct: 839 AKVVIY 844


>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
           synthetases.  Valine amino-acyl tRNA synthetase (ValRS)
           catalytic core domain. This enzyme is a monomer which
           aminoacylates the 2'-OH of the nucleotide at the 3' of
           the appropriate tRNA. The core domain is based on the
           Rossman fold and is responsible for the ATP-dependent
           formation of the enzyme bound aminoacyl-adenylate. It
           contains the characteristic class I HIGH and KMSKS
           motifs, which are involved in ATP binding.  ValRS has an
           insertion in the core domain, which is subject to both
           deletions and rearrangements. This editing region
           hydrolyzes mischarged cognate tRNAs and thus prevents
           the incorporation of chemically similar amino acids.
          Length = 382

 Score =  335 bits (861), Expect = 3e-92
 Identities = 131/248 (52%), Positives = 163/248 (65%), Gaps = 22/248 (8%)

Query: 385 CERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCIS 444
           C RSG  IEP +  QW++  K LA+ A+ + K G + F+P+  +K Y  WLENI+ WCIS
Sbjct: 156 CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCIS 215

Query: 445 RQIWWGHQIPVWYSPD-GKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDL 503
           RQ+WWGH+IP WY  D G   V   ED A+                K           + 
Sbjct: 216 RQLWWGHRIPAWYCKDGGHWVVAREEDEAID---------------KAAPEACVPCGGEE 260

Query: 504 LKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLY 563
           LK+DEDVLDTWFSS+LWPF++LGWPE+T +LK +YPTS+LVTG DI+FFWVARM+M GL 
Sbjct: 261 LKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLK 320

Query: 564 FMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMA 623
                   G  PF  VY+H LVRD++G+KMSKS GNV+DP+DVID YGADALRF  +  A
Sbjct: 321 LT------GKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAA 374

Query: 624 VQGRDINL 631
            QGRDINL
Sbjct: 375 TQGRDINL 382



 Score =  274 bits (704), Expect = 6e-74
 Identities = 104/156 (66%), Positives = 122/156 (78%), Gaps = 1/156 (0%)

Query: 37  GVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVES 96
            VF I  PPPNVTGSLHMGHA N TIQDI+ R++RM+G NVLW PGTDHAGIATQ+ VE 
Sbjct: 1   PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVE- 59

Query: 97  RLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNA 156
           +       TR D+GR+ F+EK WEWK+ESGG I  QLKRLGAS DWSRE FTMD G+S A
Sbjct: 60  KKLGIEGKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRA 119

Query: 157 VRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEV 192
           V+ AFV LY+ GLIYRD R+VNW P L+T++SD+EV
Sbjct: 120 VQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV 155


>gnl|CDD|35655 KOG0434, KOG0434, KOG0434, Isoleucyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 1070

 Score =  230 bits (589), Expect = 1e-60
 Identities = 223/1000 (22%), Positives = 401/1000 (40%), Gaps = 149/1000 (14%)

Query: 5   KTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQD 64
           + ++F   E+K +E W  +DAF   +    G   F     PP  TG  H GH   +TI+D
Sbjct: 6   ENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKD 65

Query: 65  IMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEK------- 117
           I+ R+    G +V  + G D  G+  +  ++ +L          +G D +  +       
Sbjct: 66  IVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMR 125

Query: 118 -VWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRI 176
              EW+K           RLG   D+  +  T+      +V   F  L++ GL+YR  ++
Sbjct: 126 YSSEWEKTVE--------RLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKV 177

Query: 177 VNWDPSLKTSVSDLEVIQ--KEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDY 234
           + +  +  T +S+ E  Q  K+V     +V +PL+           D +   + W     
Sbjct: 178 MPYSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIG----------DPNVSLVAW----- 222

Query: 235 IIVSTTRPETMFGDVAIAVHPDDYRY---------------KELIGKYATLP------IV 273
               TT P T+  ++A+ V+PD ++Y               +  +G+    P      I+
Sbjct: 223 ----TTTPWTLPSNLALCVNPD-FQYVKIKDKTTGKKYILMESRLGELYKNPKNDNYEIL 277

Query: 274 GRL-------------------------IPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIA 308
            R                            ++SD Y   + G G V   PA    D+   
Sbjct: 278 ERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRAC 337

Query: 309 KRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEK 368
             +G+   + L P     + E+  F   +          ++F G     A   I+  L+ 
Sbjct: 338 VANGIIRKDSLPPCP---VDESGLFTSEV----------TDFAGQYVKDADKLIIRSLKA 384

Query: 369 SNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSW- 427
           S  L K     H  P C RS   +       W++  K + +  +R+  N    ++PQ+  
Sbjct: 385 SGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRN--NMKTHWVPQNIK 442

Query: 428 DKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFV-----ENTEDAALRSAIDYYLS 482
           +K +  WL+N + W ISR  +WG  IP+W S D +  V     +  E+ +     D +  
Sbjct: 443 EKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLHRE 502

Query: 483 QDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWP-EQTAELKTYYPTS 541
             + +T+  +K          L R  +V D WF S   P+A   +P E   E +  +P  
Sbjct: 503 SIDHITIPSKKGKGV------LHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPAD 556

Query: 542 VLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVV 601
            +  G D    W   ++++           G  PF  V ++ LV  ++G+KMSK   N  
Sbjct: 557 FIAEGLDQTRGWFYTLLVLSTALF------GKPPFKNVIVNGLVLAEDGKKMSKRLKNYP 610

Query: 602 DPIDVIDQYGADALRFYF-SIMAVQGRDINLDLERIAG-YRNFITKFWNAIRFSKMKNAR 659
           DP  +I++YGADALR Y  +   V+  ++    E +    ++ +  ++N+ RF     A 
Sbjct: 611 DPSLIINKYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAAL 670

Query: 660 H----SVSFVPQDV---KWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDEL 712
                   FV  D      ++++WI+    +++  V   M+ +R   V   L +F+ DEL
Sbjct: 671 LKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFI-DEL 729

Query: 713 CDWYVEFIKSILNQKDSELVSET-LSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDM 771
            +WY+ F +  L  ++ E      L+    VL+ + +++ P  PF TE +Y ++     +
Sbjct: 730 TNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPI 789

Query: 772 DKQGL------LCHAQWPSLIIDDSESIEEVNWIIDLISKVRSIRTEMNVPLKA-VVPLV 824
           DK               P   + D      V  +  +I   R+IR    + LK  +  L+
Sbjct: 790 DKNEKSERSVHFLSYPTPKEELIDETVERRVERMQSIIDLARNIRERNTISLKTPLKELI 849

Query: 825 FANIDAHVRKRLEC-HKCIIDRLSSGNIIFADCPPDRSIQIILDGMVLFLAIGDFVDFVK 883
             + D    + ++   + I++ L+   ++F     +    ++L     F  +G       
Sbjct: 850 VIHSDEEYLEDIKSLERYILEELNVREVVF--TSDEEKYGVVLKAEPDFPVLG------- 900

Query: 884 ERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAE 923
              +LKK ++KV   L  +  + E  +F++     +   E
Sbjct: 901 --KKLKKDMKKVKKALKQVTSE-EVEEFLKSGKLVVDGHE 937


>gnl|CDD|35654 KOG0433, KOG0433, KOG0433, Isoleucyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 937

 Score =  227 bits (580), Expect = 1e-59
 Identities = 185/804 (23%), Positives = 321/804 (39%), Gaps = 127/804 (15%)

Query: 50  GSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDI 109
           G+LH+GHA N  ++DI+ R    +GK+ L+ PG D  G+  + T      A SSLT  + 
Sbjct: 68  GNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTK-----ALSSLTESEG 122

Query: 110 GRDAF--IEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKD 167
            R       K   +  E+    +   +R G + DW     T       A  + F  LY+ 
Sbjct: 123 SRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEK 182

Query: 168 GLIYRDKRIVNWDPSLKTSV--SDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAK 225
           GL+YR  + V W PS +T++  S+LE        +  Y R+ L         I F   A 
Sbjct: 183 GLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSA-YFRFKL---------INFSSSAH 232

Query: 226 PIDWEVRD-YIIVSTTRPETMFGDVAIAVHPD---------------------------- 256
             D ++   Y +V TT P T+  + AI+V+                              
Sbjct: 233 SEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFE 292

Query: 257 ---DYRYK--------ELIGKYATLPIVGRL-IPIVSDVYPDPEFGDGAVKVTPAHDFND 304
              D + K         LIG+    P+   L +PI+   +     G G V   PAH F D
Sbjct: 293 KSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFED 352

Query: 305 FEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVS 364
           + +A   GL          + F+     +        + + +  E         +  ++ 
Sbjct: 353 YLVAISKGL--------RVESFVDSRGCYTREAGHDLDGKEVLGE--------GQKIVLR 396

Query: 365 LLEKSNLLDKTDSYRHIVPHCERSGVTIEPCI---TEQWYLDAKVLAESAIRSAKNGCLS 421
           LL  ++ +     Y H  P+  R   T +P I   +EQW++D + + + A  +  +  + 
Sbjct: 397 LL--NHDIVHVSKYVHSYPYDWR---TKKPVIIRASEQWFIDVEEIKKRASMALDD--VK 449

Query: 422 FIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAAL------RS 475
             P   D    + +     WCISRQ  WG  IP  Y  +G  ++ N+           + 
Sbjct: 450 VAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQE 509

Query: 476 AID--YYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSAL-WPFASLGWPEQTA 532
             D  + +  +  +  +  + I D  I+   K+  D++D WF S   W        E  A
Sbjct: 510 GSDVWWEIDVEELLPEEEVREIPD--IASEYKKGTDIMDVWFDSGSSWSAVLDNEREHVA 567

Query: 533 ELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQK 592
           +        V + G D    W    ++  +     A      P+  V +H    D+NG K
Sbjct: 568 D--------VYLEGVDQFRGWFQSSLLTSVAVQNKA------PYKKVIVHGFTLDENGNK 613

Query: 593 MSKSKGNVVDPIDVID------QYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKF 646
           MSKS GNVVDP  V D       YGAD LRF+ +     G +  +  + +      + KF
Sbjct: 614 MSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGSENTG-ESKIGPKILDQVDEKLIKF 672

Query: 647 WNAIRF--SKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVL 704
            N  RF    +++        P      ++++++++L  ++  +     +++F  V   L
Sbjct: 673 RNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDL 732

Query: 705 YRFVWDELCDWYVEFIKSIL--NQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLY 762
            +F+   L  +Y + +K  L  ++  SE      +   ++L+N+  ++ PI+P + E+++
Sbjct: 733 QQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVW 792

Query: 763 SHVSPQDDMDKQGLLCHAQWPSLI 786
            H+        + +    +W  L 
Sbjct: 793 QHL----PGSHEKIF-RLKWEDLH 811


>gnl|CDD|30841 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 814

 Score =  219 bits (560), Expect = 2e-57
 Identities = 198/900 (22%), Positives = 333/900 (37%), Gaps = 216/900 (24%)

Query: 4   DKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAM-PPPNVTGSLHMGHAFNTTI 62
              Y+   IE+K  ++W     F  D         + + M P P+  G+LH+GH  N TI
Sbjct: 2   MSRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPS--GALHVGHVRNYTI 59

Query: 63  QDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWK 122
            D++ R++RM+G NVL   G D    A  +  E+   A        IG D       +W 
Sbjct: 60  GDVIARYKRMQGYNVLHPMGWD----AFGLPAEN--AA------IKIGTDPA-----KWT 102

Query: 123 KESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPS 182
             +   +  QLK LG S DW RE  T D      ++  F+ LY+ GL YR +  VNW P 
Sbjct: 103 YYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPV 162

Query: 183 LKTSVSDLEVI------------QKEVDGNLWYVR------------YPL-------VEG 211
             T +++ +VI             KE+    W+ +              L       V+G
Sbjct: 163 DGTVLANEQVIDGGCWRCGEPVEIKEL--TQWFFKITDYADELLDDLDKLATLWPETVKG 220

Query: 212 VTYRHPIKFDDDAKPIDWEVRDY-----IIVSTTRPETMFGDVAIAVHPDDYRYKELI-- 264
           +  R+ I   +  + + + V        I V TTRP+T+FG   + + P+     +L+  
Sbjct: 221 MQ-RNWIGPSEGYE-VAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTN 278

Query: 265 ---------------------------------GKYATLPIVGRLIPIVSDVYPDPEFGD 291
                                            G YA  P+ G  IP+    Y   E+G 
Sbjct: 279 PQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGT 338

Query: 292 GAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFE 351
           GAV   PAHD  D E A ++ L    ++ PE  +     + +    VL +         +
Sbjct: 339 GAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTV---GKKVYEGEGVLINSG-----GLD 390

Query: 352 GLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESA 411
           GLD   A+ KI   L K  L                           QW+++ +      
Sbjct: 391 GLDYEEAKVKIRCGLVKRGL--------------------------GQWFVNYR------ 418

Query: 412 IRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDA 471
                                     ++ W  SRQ +WG  IP+ +  D  +     +  
Sbjct: 419 --------------------------LRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWL 452

Query: 472 ALRS-AIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALW-------PFA 523
            ++       L   + +     + + +        R+ D +DT+  S  W       P  
Sbjct: 453 PVKLPERVRGLGTGSPLP-WDEEWVIESLPDSTAYRETDTMDTFIDS-SWYYLRFFDPIF 510

Query: 524 SLGWPEQTAELKTYYPTSVLVTGFD-----ILF--FWVARMMMMGLYFMKDAEG-KGIEP 575
               P    E   +YP  + + G +     +L+  F+           + D       EP
Sbjct: 511 LGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHK--------ALFDEGLVPKDEP 562

Query: 576 FHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLER 635
           F  +    +V  + G+KMSKSKGNVVDP + +++YGAD +R Y    A   +D+      
Sbjct: 563 FKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESG 622

Query: 636 IAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENH 695
           + G R F+ + WN ++    K          ++ +W++++  IK++              
Sbjct: 623 VEGARRFLQRVWNLVKEHLEKLVEELTKEQGKEDRWLLHR-TIKKVTEDFE------ARQ 675

Query: 696 RFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIP 755
            FN   A L   +       Y+   +      D +++ E L  +        +LL P  P
Sbjct: 676 TFNTAIAALMELL--NALRKYLRRTEG-----DRKVLREALETWV-------RLLAPFAP 721

Query: 756 FVTEDLYSHVSPQDDMDKQGLLCHAQWPSLIIDDSESIEEVNWIIDLISKVRSIRTEMNV 815
            + E+L+       ++  +G + +A WP    D+   +E+   I+  ++     R  +  
Sbjct: 722 HIAEELWE------ELGNEGFVSNAPWP--EPDEEALVEDEVEIVVQVNGKVRAREVVAA 773


>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
           isoleucyl, leucyl, valyl and methioninyl tRNA
           synthetases.  Catalytic core domain of isoleucyl,
           leucyl, valyl and methioninyl tRNA synthetases. These
           class I enzymes are all monomers. However, in some
           species, MetRS functions as a homodimer, as a result of
           an additional C-terminal domain. These enzymes
           aminoacylate the 2'-OH of the nucleotide at the 3' of
           the appropriate tRNA. The core domain is based on the
           Rossman fold and is responsible for the ATP-dependent
           formation of the enzyme bound aminoacyl-adenylate. It
           contains the characteristic class I HIGH and KMSKS
           motifs, which are involved in ATP binding.  Enzymes in
           this subfamily share an insertion in the core domain,
           which is subject to both deletions and rearrangements.
           This editing region hydrolyzes mischarged cognate tRNAs
           and thus prevents the incorporation of chemically
           similar amino acids. MetRS has a significantly shorter
           insertion, which lacks the editing function.
          Length = 312

 Score =  163 bits (415), Expect = 2e-40
 Identities = 75/236 (31%), Positives = 102/236 (43%), Gaps = 61/236 (25%)

Query: 396 ITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPV 455
           ITEQW+ D     E  +++ + G    +P+        WLE++  W ISRQ +WG  +P 
Sbjct: 138 ITEQWFFDMPKFKEKLLKALRRG--KIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP- 194

Query: 456 WYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWF 515
                                                               EDV D WF
Sbjct: 195 ----------------------------------------------------EDVFDVWF 202

Query: 516 SSALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEP 575
            S + P  SLG+PE+    K  YP    + G DIL  W    + M +         G  P
Sbjct: 203 DSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALF------GEIP 256

Query: 576 FHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL 631
              + +H  V D+ GQKMSKSKGNV+DP DV+++YGADALR+Y + +A  G DI L
Sbjct: 257 PKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312



 Score =  138 bits (349), Expect = 8e-33
 Identities = 51/140 (36%), Positives = 69/140 (49%), Gaps = 4/140 (2%)

Query: 38  VFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESR 97
            F +  PPP   GSLH+GHA    I D + R++RMRG  V + PG D  G+  ++  E +
Sbjct: 1   KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60

Query: 98  LFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAV 157
                   ++ I  + F E   E+ +E  G      +RLG S DWS E  T +   S AV
Sbjct: 61  G----GRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAV 116

Query: 158 RNAFVVLYKDGLIYRDKRIV 177
              F  LY+ GLIYR    V
Sbjct: 117 ELIFSRLYEKGLIYRGTHPV 136


>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA
           synthetases.  This domain is found in valyl tRNA
           synthetases (ValRS), which belong to the class Ia
           aminoacyl tRNA synthetases. It lies C-terminal to the
           catalytic core domain, and recognizes and specifically
           binds to the tRNA anticodon. ValRS catalyzes the
           transfer of valine to the 3'-end of its tRNA.
          Length = 135

 Score =  162 bits (412), Expect = 4e-40
 Identities = 48/134 (35%), Positives = 74/134 (55%)

Query: 631 LDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTV 690
            D +R+ G RNF  K WNA RF  M            +   + ++WI+ RL   + +VT 
Sbjct: 1   FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTE 60

Query: 691 GMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLL 750
            +EN+RF++ +  LY F W++ CDWY+E +K  L  +D E      +   YVL  + +LL
Sbjct: 61  ALENYRFSEAATALYEFFWNDFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLL 120

Query: 751 HPIIPFVTEDLYSH 764
           HP +PF+TE+L+  
Sbjct: 121 HPFMPFITEELWQR 134


>gnl|CDD|35656 KOG0435, KOG0435, KOG0435, Leucyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 876

 Score =  146 bits (370), Expect = 2e-35
 Identities = 170/742 (22%), Positives = 262/742 (35%), Gaps = 204/742 (27%)

Query: 10  AFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAM-PPPNVTGSLHMGHAFNTTIQDIMIR 68
           A IE+   +       F  D         + ++M P P  +G+LH+GH    TI DI+ R
Sbjct: 33  AMIEKHWKQYLKDGFPFSKDS--DKSKKKYILSMFPYP--SGALHIGHVRVYTISDILAR 88

Query: 69  FERMRGKNVLWQPGTDHAGI-ATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGG 127
           F RM+G NV+   G D  G+ A    +E  +   S                  W   +  
Sbjct: 89  FYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPAS------------------WTINNIA 130

Query: 128 SILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSV 187
            +  QLK LG S DW RE  T +       +  F+ L++ GL Y+ +  VNWDP  KT +
Sbjct: 131 KMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVL 190

Query: 188 SDLEVIQKEVDGNLW---------YVRYPLVEGVTYRHPIKFDDDAKPIDW-EVRDY--- 234
           ++ +V   + DG  W          +R   ++   Y   +    +  P +W EV+D    
Sbjct: 191 ANEQV---DADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLP-EWPEVKDMQRN 246

Query: 235 -----------------------IIVSTTRPETMFGDVAIAVHPD------DYRYKELIG 265
                                  + V TTRPET+FG   + + P       D   KE + 
Sbjct: 247 WIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLS 306

Query: 266 K------------YATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGL 313
           K             A  P+ GR IP+V   Y    +G GAV   P HD  D E+A++ G+
Sbjct: 307 KSDLPQKGVQLPCQAKNPVTGRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGI 366

Query: 314 GFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLD 373
            +I              E                        F    K       +NL  
Sbjct: 367 KWI-----------ICIEVI----------------------FTNFGKKNEQKAFTNLDI 393

Query: 374 KTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYE 433
           + ++   +    ER GV                +    ++                   +
Sbjct: 394 RQNAALKLFQFAERKGV-------------GGYVVSYKLK-------------------D 421

Query: 434 WLENIQPWCISRQIWWGHQIPVWYSPD-GKLFVENTEDAALRSAIDYYLSQDNDMTVKVR 492
           WL       ISRQ +WG  IP+ +  D G + V  +E       ++ +  +   ++    
Sbjct: 422 WL-------ISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADE 474

Query: 493 KM-IKDGNISDLLKRDEDVLDTWFSSALWPFASLG-----WPEQTAELKTYYPTSVLVTG 546
            + +      +  KR+ D +DT+  S+ +    L       P   A+ K   P  V + G
Sbjct: 475 WVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGG 534

Query: 547 FD--ILFFWVARMMMMGLYFMKDAE-GKGIEPFHIVYMHALVRDKNG------------- 590
            +  +L    AR +     F+KD       EPF  +    +VR K               
Sbjct: 535 KEHAVLHLLYARFIA---KFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEE 591

Query: 591 ------------------------QKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQG 626
                                   +KMSKSK N VDP DV+ +YG D  R Y    A   
Sbjct: 592 VQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPR 651

Query: 627 RDINLDLERIAGYRNFITKFWN 648
             IN +   I G + ++ + W 
Sbjct: 652 DPINWNESAIPGIKRWLQRIWA 673


>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
           synthetases.  Isoleucine amino-acyl tRNA synthetases
           (IleRS) catalytic core domain . This class I enzyme is a
           monomer which aminoacylates the 2'-OH of the nucleotide
           at the 3' of the appropriate tRNA. The core domain is
           based on the Rossman fold and is responsible for the
           ATP-dependent formation of the enzyme bound
           aminoacyl-adenylate. It contains the characteristic
           class I HIGH and KMSKS motifs, which are involved in ATP
           binding.  IleRS has an insertion in the core domain,
           which is subject to both deletions and rearrangements.
           This editing region hydrolyzes mischarged cognate tRNAs
           and thus prevents the incorporation of chemically
           similar amino acids.
          Length = 338

 Score =  131 bits (333), Expect = 7e-31
 Identities = 69/236 (29%), Positives = 107/236 (45%), Gaps = 48/236 (20%)

Query: 397 TEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVW 456
           T QW++    + +  + +     +++IP+     +  WLEN + WCISRQ +WG  IPVW
Sbjct: 150 TPQWFIRVTKIKDRLLEANDK--VNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVW 207

Query: 457 YSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFS 516
           Y  D                                          L++R  DVLD WF 
Sbjct: 208 YCEDCG--------------------------------------EVLVRRVPDVLDVWFD 229

Query: 517 SALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMG-LYFMKDAEGKGIEP 575
           S   P+A L +P +  + +  +P   ++ G D    W   ++++    F       G  P
Sbjct: 230 SGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALF-------GKAP 282

Query: 576 FHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL 631
           +  V +H  V D++G+KMSKS GN VDP +V+D+YGADALR + +   V   D+  
Sbjct: 283 YKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338



 Score = 92.7 bits (231), Expect = 4e-19
 Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 16/143 (11%)

Query: 45  PPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSL 104
           PP   G  H GHA N  ++DI+ R++ M+G  V  +PG D  G+  ++ VE  L      
Sbjct: 9   PPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKK 68

Query: 105 TREDIGRDAFIEK--------VWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNA 156
             E +G   F  K        V E ++        Q +RLG   DW     TMD     +
Sbjct: 69  DIEKMGIAEFNAKCREFALRYVDEQEE--------QFQRLGVWVDWENPYKTMDPEYMES 120

Query: 157 VRNAFVVLYKDGLIYRDKRIVNW 179
           V   F  L++ GL+YR  ++V W
Sbjct: 121 VWWVFKQLHEKGLLYRGYKVVPW 143


>gnl|CDD|30492 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 558

 Score = 98.8 bits (246), Expect = 6e-21
 Identities = 82/416 (19%), Positives = 138/416 (33%), Gaps = 97/416 (23%)

Query: 383 PHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLEN-IQPW 441
           P C  SG T E    E ++       +  +   ++      P +       +L+  ++  
Sbjct: 173 PVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDL 232

Query: 442 CISRQ-IWWGHQIP--------VWYSPDGKLFVENTEDAALR--SAIDYYLSQDNDMTVK 490
            I+R  + WG  +P        VW+            DA +   SA+       +D    
Sbjct: 233 SITRTDLDWGIPVPGDPGKVIYVWF------------DALIGYISALGELAEIGDD---- 276

Query: 491 VRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSVLVTGFDIL 550
                             +    +            WP    EL       V   G DI+
Sbjct: 277 ------------------EDFKKF------------WPADDTEL-------VHFIGKDII 299

Query: 551 FF----WVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDV 606
            F    W A  M+M           G+     ++ H  +    GQKMSKS+GNVVDP ++
Sbjct: 300 RFHAVYWPA--MLMAA---------GLPLPTRIFAHGFLT-LEGQKMSKSRGNVVDPDEL 347

Query: 607 IDQYGADALRFYFSIMAVQGRDINLDLERIAGYRN--FITKFWN-AIRFSKMKNARHS-V 662
           ++QYG DALR+Y +    +G D +   E      N     K  N A R     N     V
Sbjct: 348 LEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGV 407

Query: 663 SFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFV------WDELCDWY 716
                      ++ ++      +  V   ME + F      +           DE   W 
Sbjct: 408 VPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPW- 466

Query: 717 VEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMD 772
                 +  +   E ++  L     ++  +  LL+P +P   E ++  +  ++D  
Sbjct: 467 -----KLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDAR 517



 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 36/157 (22%), Positives = 55/157 (35%), Gaps = 23/157 (14%)

Query: 39  FCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRL 98
             +    P   G  H+GH +     D+  R+ R+RG  V +  GTD  G   ++  E   
Sbjct: 7   ILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK-- 64

Query: 99  FAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERF--TMDEGMSNA 156
                   E I     ++K  E             K L  S D     F  T        
Sbjct: 65  --------EGITPQELVDKNHE-------EFKELFKALNISFD----NFIRTTSPEHKEL 105

Query: 157 VRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVI 193
           V+  F+ LY++G IY  +    +  S +  + D  V 
Sbjct: 106 VQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE 142


>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
           synthetases.  Leucyl tRNA synthetase (LeuRS) catalytic
           core domain. This class I enzyme is a monomer which
           aminoacylates the 2'-OH of the nucleotide at the 3' of
           the appropriate tRNA. The core domain is based on the
           Rossman fold and is responsible for the ATP-dependent
           formation of the enzyme bound aminoacyl-adenylate. It
           contains the characteristic class I HIGH and KMSKS
           motifs, which are involved in ATP binding. In Aquifex
           aeolicus, the gene encoding LeuRS is split in two, just
           before the KMSKS motif. Consequently, LeuRS is a
           heterodimer, which likely superimposes with the LeuRS
           monomer found in most other organisms. LeuRS has an
           insertion in the core domain, which is subject to both
           deletions and rearrangements and thus differs between
           prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
           editing region hydrolyzes mischarged cognate tRNAs and
           thus prevents the incorporation of chemically similar
           amino acids.
          Length = 314

 Score = 86.5 bits (215), Expect = 3e-17
 Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 17/142 (11%)

Query: 39  FCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRL 98
           F I +  P  +G+LH+GH    TI DI+ R++RM+G NVL+  G D    A  +  E+  
Sbjct: 2   FYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFD----AFGLPAEN-- 55

Query: 99  FAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVR 158
            A        IGRD       +W + +   +  QLKR+G S DW RE  T D       +
Sbjct: 56  AA------IKIGRDPE-----DWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQ 104

Query: 159 NAFVVLYKDGLIYRDKRIVNWD 180
             F+ LY+ GL Y+ +  VNW 
Sbjct: 105 WLFLKLYEKGLAYKKEAPVNWC 126



 Score = 67.3 bits (165), Expect = 2e-11
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 564 FMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMA 623
            + D      EP   + +  +V    G+KMSKSKGNVV P + I +YGADA R Y    A
Sbjct: 248 ALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAA 306

Query: 624 VQGRDIN 630
               D +
Sbjct: 307 PPDADFD 313


>gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of
           archaeal, bacterial, and eukaryotic cytoplasmic
           isoleucyl tRNA synthetases.  This domain is found in
           isoleucyl tRNA synthetases (IleRS), which belong to the
           class Ia aminoacyl tRNA synthetases. It lies C-terminal
           to the catalytic core domain, and recognizes and
           specifically binds to the tRNA anticodon. This family
           includes bacterial, archaeal, and eukaryotic cytoplasmic
           members. IleRS catalyzes the transfer of isoleucine to
           the 3'-end of its tRNA.
          Length = 183

 Score = 82.6 bits (205), Expect = 5e-16
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 17/179 (9%)

Query: 640 RNFITKFWNAIRFSKMKNAR-----HSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMEN 694
           R  +   WNA RF     A                  ++++WI+ RL ++I +VT  ME 
Sbjct: 11  RKVLLPLWNAYRFFVT-YANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEA 69

Query: 695 HRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFS---YVLYNVCKLLH 751
           +        L  F+ DEL +WY+   +        E   + L+ ++    VL  + +L+ 
Sbjct: 70  YDLYTAVRALLEFI-DELTNWYIRRNRKRF--WGEEGDDDKLAAYATLYEVLLTLSRLMA 126

Query: 752 PIIPFVTEDLYSHVSPQDDMDKQGLLCH-AQWPSLIID--DSESIEEVNWIIDLISKVR 807
           P  PF+TE++Y ++  +     + +  H   WP +     D E  E +  + +++   R
Sbjct: 127 PFTPFITEEIYQNLRRELGDAPESV--HLLDWPEVDESLIDEELEEAMELVREIVELGR 183


>gnl|CDD|35657 KOG0436, KOG0436, KOG0436, Methionyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 578

 Score = 72.0 bits (176), Expect = 7e-13
 Identities = 62/293 (21%), Positives = 111/293 (37%), Gaps = 64/293 (21%)

Query: 507 DEDVLDTWFSSALWPFASLGWPEQT----AELKTYYPTSVLVTGFDILFF----WVARMM 558
           D   +  WF + L   + +G+P +       L   +P ++ V G DIL F    W A +M
Sbjct: 263 DSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLM 322

Query: 559 MMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFY 618
                        G+    ++++H     KNG KMSKS GNVVDP +++ +YG DA+R++
Sbjct: 323 -----------AAGLPLPKMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQKYGVDAVRYF 370

Query: 619 FSIMAVQGRDINLDLERIAGYRN------------------------FITKFWNAIR-FS 653
                  G D +   E++    N                          T   ++    +
Sbjct: 371 LLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAA 430

Query: 654 KMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDV-TVGMENHRFNDVSAVLYRFVWDEL 712
           + +    +V  +P+        +    L + +  V ++G   +      A    F  D  
Sbjct: 431 EGEPLVDTVEKLPEVAA---TNYDNFSLYSALEAVLSIGNAGNTLVQQRAPWKLF-KD-- 484

Query: 713 CDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHV 765
                       +Q  +E +++ L     VL  +  LL P+ P ++  L S +
Sbjct: 485 ------------SQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQL 525



 Score = 41.9 bits (98), Expect = 0.001
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 35 GSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITV 94
              F +  P   V  + H+GH ++T + D + RF+R++GK V++  GTD  G+  Q   
Sbjct: 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAA 96

Query: 95 ES 96
           +
Sbjct: 97 AT 98


>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of
           bacterial and eukaryotic mitochondrial isoleucyl tRNA
           synthetases.  This domain is found in isoleucyl tRNA
           synthetases (IleRS), which belong to the class Ia
           aminoacyl tRNA synthetases. It lies C-terminal to the
           catalytic core domain, and recognizes and specifically
           binds to the tRNA anticodon. This family includes
           bacterial and eukaryotic mitochondrial members. IleRS
           catalyzes the transfer of isoleucine to the 3'-end of
           its tRNA.
          Length = 180

 Score = 70.2 bits (173), Expect = 2e-12
 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 25/191 (13%)

Query: 633 LERIA-GYRNFITKFWNAIRF-----SKMKNARHSVSFVPQDVKWIVNKWIIKRLATVIN 686
           L+++A  YR    K  N  RF     +    A+ +V +        ++++ + RL  +I 
Sbjct: 6   LKQVAEAYR----KIRNTFRFLLGNLNDFDPAKDAVPYEELL---ELDRYALHRLNELIK 58

Query: 687 DVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSIL--NQKDSELVSETLSCFSYVLY 744
           +V    EN+ F+ V   L  F   +L  +Y++ IK  L  + KDS       +   ++L 
Sbjct: 59  EVREAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILD 118

Query: 745 NVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLIID-DSESIEEVNWIIDLI 803
            + KLL PI+PF  E+++ H  P +  ++   L    WP L  +   E +EE        
Sbjct: 119 ALLKLLAPILPFTAEEVWEH-LPGEKKEESVFL--EDWPELPEEWKDEELEEK------W 169

Query: 804 SKVRSIRTEMN 814
            K+ ++R E+N
Sbjct: 170 EKLLALRDEVN 180


>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
           synthetases.  Methionine tRNA synthetase (MetRS)
           catalytic core domain. This class I enzyme aminoacylates
           the 2'-OH of the nucleotide at the 3' of the appropriate
           tRNA. MetRS, which consists of the core domain and an
           anti-codon binding domain, functions as a monomer.
           However, in some species the anti-codon binding domain
           is followed by an EMAP domain. In this case, MetRS
           functions as a homodimer. The core domain is based on
           the Rossman fold and is responsible for the
           ATP-dependent formation of the enzyme bound
           aminoacyl-adenylate. It contains the characteristic
           class I HIGH and KMSKS motifs, which are involved in ATP
           binding.  As a result of a deletion event, MetRS has a
           significantly shorter core domain insertion than IleRS,
           ValRS, and LeuR.  Consequently, the MetRS insertion
           lacks the editing function.
          Length = 319

 Score = 66.8 bits (164), Expect = 3e-11
 Identities = 59/208 (28%), Positives = 86/208 (41%), Gaps = 72/208 (34%)

Query: 433 EWLEN-IQPWCISRQIW-WGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVK 490
            WL+  ++   I+R ++ WG  IPV   P   ++V    DA +      Y+S        
Sbjct: 173 SWLKEGLKDLSITRDLFDWG--IPVPLDPGKVIYV--WFDALIG-----YIS-------- 215

Query: 491 VRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSVLVTGFDIL 550
                   N       +E     W+          GWPE            V   G DI+
Sbjct: 216 ---ATGYYN-------EEWGNSWWWKD--------GWPE-----------LVHFIGKDII 246

Query: 551 FF----WVARMMMMGLYFMKDAEGKGIE-PFHIV---YMHALVRDKNGQKMSKSKGNVVD 602
            F    W A  M++G          G+  P  IV   Y+        G+KMSKS+GNVVD
Sbjct: 247 RFHAIYWPA--MLLGA---------GLPLPTRIVAHGYLTV-----EGKKMSKSRGNVVD 290

Query: 603 PIDVIDQYGADALRFYFSIMAVQGRDIN 630
           P D++++YGADALR+Y      +G+D +
Sbjct: 291 PDDLLERYGADALRYYLLRERPEGKDSD 318



 Score = 49.5 bits (119), Expect = 4e-06
 Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 23/131 (17%)

Query: 46  PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLT 105
           P V G  H+GH + T + D+  R++R+RG +VL+  GTD  G   +   E          
Sbjct: 9   PYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE--------- 59

Query: 106 REDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERF--TMDEGMSNAVRNAFVV 163
            E +      +K  E             K L  S D     F  T        V+  F  
Sbjct: 60  -EGVTPQELCDKYHE-------IFKDLFKWLNISFD----YFIRTTSPRHKEIVQEFFKK 107

Query: 164 LYKDGLIYRDK 174
           LY++G IY  +
Sbjct: 108 LYENGYIYEGE 118


>gnl|CDD|35658 KOG0437, KOG0437, KOG0437, Leucyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 1080

 Score = 62.3 bits (151), Expect = 7e-10
 Identities = 74/301 (24%), Positives = 109/301 (36%), Gaps = 63/301 (20%)

Query: 12  IEQKSVEKWNSVDAFRIDVAPKL--GSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRF 69
           IE+K  +KW++   F +D   +L      F +  P P + G LH+GHAF+ +  +    +
Sbjct: 17  IEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGY 76

Query: 70  ERMRGKNVLWQPGTDHAGI-----ATQITVESRLFA--------------QSSLTREDIG 110
           ER++GKNVL+  G    G+     A ++  E  LF               +   T + I 
Sbjct: 77  ERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIE 136

Query: 111 RDAFIEK-------------VWEWKKESG--------------------GSILSQLKRLG 137
              F  K              WE  +  G                          LKR G
Sbjct: 137 DVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFG 196

Query: 138 ASCDWSRERFTMDEG--MSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQK 195
              DW R   T D      + VR  F  L + G I   KR   + P       D +    
Sbjct: 197 LGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASG 256

Query: 196 EVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHP 255
           E    +    Y L++        K     K    ++R Y++ +T RPETM+G     V P
Sbjct: 257 E---GVGPQEYTLIKLEVLEPFPKALSSLK----DLRVYLVAATLRPETMYGQTNCYVGP 309

Query: 256 D 256
           D
Sbjct: 310 D 310



 Score = 51.9 bits (124), Expect = 7e-07
 Identities = 71/306 (23%), Positives = 128/306 (41%), Gaps = 49/306 (16%)

Query: 346 IFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCE---RSGVTIEPCITEQWYL 402
           +  +++G     A+ KI     K++L++  D+ ++  P  +   RSG      + +QWYL
Sbjct: 475 LIGKYKGEKVEDAKPKI-----KTDLIETGDALKYNEPEKQVMSRSGDECIVALCDQWYL 529

Query: 403 DAKVLAESAIRSAKNGCLS----FIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYS 458
           D     E+  +     CL     F  ++    + + L+ +  W  SR    G ++P W  
Sbjct: 530 D---YGEAEWKKQAKECLENLNTFSDET-RNGFEDTLDWLGQWACSRSYGLGTRLP-W-- 582

Query: 459 PDGKLFVENTEDAALRSA---IDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWF 515
            D +  VE+  D+ +  A   + + L +D    V+    IK   ++D      +V D  F
Sbjct: 583 -DEQYLVESLSDSTIYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTD------EVWDYVF 635

Query: 516 SSALWPFASLGWPEQTAELKT----YYPTSVLVTGFDIL-----FFWVARMMMMGLYFMK 566
            +  +P  +    E  + L+     +YP  + V+G D++     FF    + +    F +
Sbjct: 636 LNEPYPKNTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVAL----FPE 691

Query: 567 DAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQG 626
               KGI        H ++   N +KMSKS GN +     I+++GAD  R   +      
Sbjct: 692 KKWPKGIR----ANGHLML---NSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGV 744

Query: 627 RDINLD 632
            D N  
Sbjct: 745 EDANFV 750


>gnl|CDD|30564 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 464

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 572 GIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGR-DIN 630
           G++PF   +MH    + +G+KMSKS GN +   D++ +Y  + LR +   ++   R  ++
Sbjct: 248 GVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFL--LSSHYRSPLD 305

Query: 631 LDLERIAGYRNFITKFWNAIR 651
              E +   +  + + +NA+R
Sbjct: 306 FSEELLEEAKKALERLYNALR 326


>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
           aminoacyl tRNA synthetases and similar domains.  This
           domain is found in a variety of class Ia aminoacyl tRNA
           synthetases, C-terminal to the catalytic core domain. It
           recognizes and specifically binds to the anticodon of
           the tRNA. Aminoacyl tRNA synthetases catalyze the
           transfer of cognate amino acids to the 3'-end of their
           tRNAs by specifically recognizing cognate from
           non-cognate amino acids. Members include valyl-,
           leucyl-, isoleucyl-, cysteinyl-, arginyl-, and
           methionyl-tRNA synthethases. This superfamily also
           includes a domain from MshC, an enzyme in the mycothiol
           biosynthetic pathway.
          Length = 117

 Score = 52.1 bits (125), Expect = 6e-07
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 633 LERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGM 692
            ER+   R F+ + +  + F + K    +      ++    ++ ++ RL   I   T  +
Sbjct: 1   EERLKQARAFLNRLYRLLSFFR-KALGGTQPKWDNELLEEADRELLARLQEFIKRTTNAL 59

Query: 693 ENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHP 752
           E          L++F  +   +WY++ +K  L  +  EL    L+     L  + KLL P
Sbjct: 60  EALDPTTAVQELFKFTNEL--NWYLDELKPAL--QTEELREAVLAVLRAALVVLTKLLAP 115

Query: 753 I 753
            
Sbjct: 116 F 116


>gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of  class I
           lysyl tRNA synthetase.  Class I lysyl tRNA synthetase
           (LysRS) catalytic core domain. This class I enzyme is a
           monomer which aminoacylates the 2'-OH of the nucleotide
           at the 3' of the appropriate tRNA. The core domain is
           based on the Rossman fold and is responsible for the
           ATP-dependent formation of the enzyme bound
           aminoacyl-adenylate. It contains the characteristic
           class I HIGH and KMSKS motifs, which are involved in ATP
           binding. The class I LysRS is found only in archaea and
           some bacteria and has evolved separately from class II
           LysRS, as the two do not share structural or sequence
           similarity.
          Length = 353

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 572 GIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL 631
           G  P  ++Y    +  K G KMS SKGNV+ P D ++    + LR+ ++      + I  
Sbjct: 257 GEPPVPVMY--EFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKHIGF 314

Query: 632 DLERIAGYRNFITKF 646
           DL+ +  Y  +    
Sbjct: 315 DLDILRLYDEYDRLE 329


>gnl|CDD|145212 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K).  This family
           includes only lysyl tRNA synthetases from prokaryotes.
          Length = 355

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 575 PFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYF 619
           P    Y   L+  K G KMS SKGN +   + ++    ++LRF  
Sbjct: 263 PEPFPY--ELILLKGGGKMSSSKGNGITIEEWLEYAPPESLRFLM 305


>gnl|CDD|31574 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation,
           ribosomal structure and biogenesis].
          Length = 521

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 575 PFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYF 619
           P   VY    +  K G KMS SKGNV+   D ++    + LR+  
Sbjct: 262 PVPFVY--EWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLI 304


>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
           synthetase.  Cysteinyl tRNA synthetase (CysRS) catalytic
           core domain. This class I enzyme is a monomer which
           aminoacylates the 2'-OH of the nucleotide at the 3' of
           the appropriate tRNA. The core domain is based on the
           Rossman fold and is responsible for the ATP-dependent
           formation of the enzyme bound aminoacyl-adenylate. It
           contains the characteristic class I HIGH and KMSKS
           motifs, which are involved in ATP binding.
          Length = 213

 Score = 42.2 bits (100), Expect = 7e-04
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 589 NGQKMSKSKGNVVDPIDVIDQYGADALRFYF 619
           +G+KMSKS GN +   D + +Y  + LR   
Sbjct: 171 DGEKMSKSLGNFITVRDALKKYDPEVLRLAL 201


>gnl|CDD|110410 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
           domain.  This family includes only cysteinyl tRNA
           synthetases.
          Length = 301

 Score = 38.5 bits (90), Expect = 0.008
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 589 NGQKMSKSKGNVVDPIDVIDQYGADALRFYF 619
            G+KMSKS GN +   DV+ +Y    LR++ 
Sbjct: 250 EGEKMSKSLGNFLTIRDVLKRYDPRILRYFL 280


>gnl|CDD|30368 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 577

 Score = 37.5 bits (87), Expect = 0.018
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 46  PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNV 77
            N TG LH+GH  N  I D + R     G +V
Sbjct: 126 ANPTGPLHIGHLRNAIIGDSLARILEFLGYDV 157



 Score = 36.0 bits (83), Expect = 0.047
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 24/98 (24%)

Query: 562 LYFMKDAEGKGIEPFHIV-YMHALVRDKNGQKMSKSKGNVVDPIDVIDQ----------- 609
           L  + +  G G +   ++     LVR   G KMS   GNVV   D++D+           
Sbjct: 352 LKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEE 411

Query: 610 -----------YGADALRFYFSIMAVQGRDINLDLERI 636
                       G DA+R+   +   + +D   D ++ 
Sbjct: 412 KEEKNEEIAEVVGIDAVRYAD-LSRSRDKDYVFDWDKA 448


>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal
           and eukaryotic cytoplasmic leucyl tRNA synthetases.
           This domain is found in leucyl tRNA synthetases (LeuRS),
           which belong to the class Ia aminoacyl tRNA synthetases.
           It lies C-terminal to the catalytic core domain. In
           contrast to other class Ia enzymes, the anticodon is not
           used as an identity element in LeuRS (with exceptions
           such as Saccharomyces cerevisiae and some other
           eukaryotes). No anticodon-binding site can be defined
           for this family, which includes archaeal and eukaryotic
           cytoplasmic members. LeuRS catalyzes the transfer of
           leucine to the 3'-end of its tRNA.
          Length = 117

 Score = 36.0 bits (84), Expect = 0.046
 Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 19/95 (20%)

Query: 673 VNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELV 732
           +++W++ RL  +I + T   EN +F +        + ++L DWY E   + +N+      
Sbjct: 36  IDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDL-DWYRERGGAGMNKD----- 89

Query: 733 SETLSCFSYVLYNVC----KLLHPIIPFVTEDLYS 763
                    +L        +LL P  P + E+++ 
Sbjct: 90  ---------LLRRFIEVWTRLLAPFAPHLAEEIWH 115


>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
           synthetases.  Arginyl tRNA synthetase (ArgRS) catalytic
           core domain. This class I enzyme is a monomer which
           aminoacylates the 2'-OH of the nucleotide at the 3' of
           the appropriate tRNA. The core domain is based on the
           Rossman fold and is responsible for the ATP-dependent
           formation of the enzyme bound aminoacyl-adenylate. There
           are at least three subgroups of ArgRS. One type contains
           both characteristic class I HIGH and KMSKS motifs, which
           are involved in ATP binding. The second subtype lacks
           the KMSKS motif; however, it has a lysine N-terminal to
           the HIGH motif, which serves as the functional
           counterpart to the second lysine of the KMSKS motif. A
           third group, which is found  primarily in archaea and a
           few bacteria,  lacks both the KMSKS motif and the HIGH
           loop lysine.
          Length = 212

 Score = 36.0 bits (84), Expect = 0.052
 Identities = 34/133 (25%), Positives = 46/133 (34%), Gaps = 30/133 (22%)

Query: 46  PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLT 105
            N TG LH+GH  N  I D + R     G +V  +   +  G   QI     L   S   
Sbjct: 9   ANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWG--RQI----GLLILS--- 59

Query: 106 REDIGRDAFIEKVWEWKK---ESGGSILSQLKRLGASCD-WSRERFTMDEGMSNAVRNAF 161
                       + +W+K   ES  + L    RL    D W  E      G+   V    
Sbjct: 60  ------------LEKWRKLVEESIKADLETYGRLDVRFDVWFGESSY--LGLMGKVVELL 105

Query: 162 VVLYKDGLIYRDK 174
             L   GL+Y + 
Sbjct: 106 EEL---GLLYEED 115


>gnl|CDD|37218 KOG2007, KOG2007, KOG2007, Cysteinyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 586

 Score = 35.7 bits (82), Expect = 0.056
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 589 NGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRD 628
           NG+KMSKS  N +   + + +Y    LR  F  +  Q R 
Sbjct: 302 NGEKMSKSLKNFITIKEALKKYSPRQLRLAF--LLHQWRS 339


>gnl|CDD|35383 KOG0161, KOG0161, KOG0161, Myosin class II heavy chain
            [Cytoskeleton].
          Length = 1930

 Score = 34.4 bits (79), Expect = 0.13
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 14/77 (18%)

Query: 880  DFVKERSRLKKSLEKVLDELSSIKKKLENNQ-FVEKAPPSI-------------LQAEKE 925
            +  K++  L   L+K   ELS ++ KLE+ Q  V +    I             L+AE+ 
Sbjct: 1059 ELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERA 1118

Query: 926  RFSKVEKKRISLENSLE 942
              +K E++R  L   LE
Sbjct: 1119 SRAKAERQRRDLSEELE 1135



 Score = 32.9 bits (75), Expect = 0.41
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 883  KERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENS 940
              R++ ++    + +EL  +K++LE          + L+  K+R ++V+K R  LE  
Sbjct: 1118 ASRAKAERQRRDLSEELEELKEELEE---QGGTTAAQLELNKKREAEVQKLRRDLEEE 1172



 Score = 28.7 bits (64), Expect = 8.6
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 891  SLEKVLDELSSIKKKLE--NNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIR 945
            SL++ + +LS  KK+LE    +  +      LQAE+E+   + K +  LE  L+ + 
Sbjct: 975  SLDENISKLSKEKKELEERIRELQDD-----LQAEEEKAKSLNKAKAKLEQQLDDLE 1026


>gnl|CDD|144375 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R).  Other tRNA
           synthetase sub-families are too dissimilar to be
           included. This family includes only arginyl tRNA
           synthetase.
          Length = 345

 Score = 34.0 bits (78), Expect = 0.20
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 546 GFDILF-FWVAR--MMMMGLYFMKDAEG---KGIEPFHIVYMHALVRDKNGQKMSKSKGN 599
           GFD++     A     +  L+    A G   + +E  HI +   L +D  G++MS   GN
Sbjct: 229 GFDLIIYVLGADQHGHIQRLFAAAAALGYDPESVEVLHIGFGVVLGKD--GKRMSTRAGN 286

Query: 600 VVDPIDVIDQYGADALR 616
           VV   D++D+    A+ 
Sbjct: 287 VVTLDDLLDEALERAMD 303


>gnl|CDD|146542 pfam03961, DUF342, Protein of unknown function (DUF342).  This
           family of bacterial proteins has no known function. The
           proteins are in the region of 500-600 amino acid
           residues in length.
          Length = 450

 Score = 33.8 bits (78), Expect = 0.25
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 877 DFVDFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRIS 936
           DF +  +E   L++ L+++ +EL  IKK L+     +KA   +   ++E+  K+ + +  
Sbjct: 328 DFPELKEELKELEEELKELEEELEKIKKLLKKLP--KKARGQLPPEKREQLEKLLETKEK 385

Query: 937 LENSLERIR 945
           L   LE + 
Sbjct: 386 LSEELEELE 394


>gnl|CDD|147612 pfam05524, PEP-utilizers_N, PEP-utilising enzyme, N-terminal. 
          Length = 123

 Score = 33.4 bits (77), Expect = 0.35
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 880 DFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQA 922
           D   E +RL+ +LEK  +EL ++ ++   +   E+A  +I +A
Sbjct: 32  DVEAEIARLEAALEKAREELEALAERAAESLGEEEA--AIFEA 72


>gnl|CDD|30358 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases
           [Translation, ribosomal structure and biogenesis].
          Length = 472

 Score = 32.6 bits (74), Expect = 0.53
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 579 VYMH-ALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIA 637
           VY H  L+ +++G+K+SK KG V      ++ +   AL    +++   GR    +   I 
Sbjct: 236 VYAHLPLLLNEDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALL---GRGYPPEAIEIF 292

Query: 638 GYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWI 677
                I  F +    SK        +F  + + W+  +++
Sbjct: 293 SLEEGIKWF-DLTIVSKS-----PAAFDRKKLDWLNPRYM 326


>gnl|CDD|36479 KOG1265, KOG1265, KOG1265, Phospholipase C [Lipid transport and
            metabolism].
          Length = 1189

 Score = 31.5 bits (71), Expect = 1.0
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 881  FVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLE 938
            FV+ER RL +   K  ++L  +KK LE  + + +   + L AE E+  + +  R+  E
Sbjct: 1133 FVEERKRLAEKQSKRQEQL--VKKHLEVLEQLAEEEKA-LDAEAEQEYEEQMARLPAE 1187


>gnl|CDD|36181 KOG0963, KOG0963, KOG0963, Transcription factor/CCAAT displacement
           protein CDP1 [Transcription].
          Length = 629

 Score = 31.5 bits (71), Expect = 1.1
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 880 DFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLEN 939
              +E   LK+ LE+V +EL+ +K +      V      + + E+     +E      E 
Sbjct: 118 KASEENEELKEELEEVNNELADLKTQQVT---VRNLKERLRKLEQLLEIFIENAANETEE 174

Query: 940 SLER 943
            LE+
Sbjct: 175 KLEQ 178


>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
           synthetase.  Tyrosinyl-tRNA synthetase (TyrRS) catalytic
           core domain. TyrRS is a homodimer which attaches Tyr to
           the appropriate tRNA. TyrRS is a class I tRNA
           synthetases, so it aminoacylates the 2'-OH of the
           nucleotide at the 3' end of the tRNA. The core domain is
           based on the Rossman fold and is responsible for the
           ATP-dependent formationof the enzyme bound
           aminoacyl-adenylate. It contains the class I
           characteristic HIGH and KMSKS motifs, which are involved
           in ATP binding.
          Length = 269

 Score = 30.7 bits (70), Expect = 1.8
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 14/61 (22%)

Query: 574 EPFHIVYMHALVRDKNGQKMSKSKGNVV------DPIDV----IDQYGADALRF--YFSI 621
           +   +     L+   +G KMSKS+GN +       P DV     + +  D L F   F+ 
Sbjct: 179 KVVGL--TTPLLTGLDGGKMSKSEGNAIWDPVLDSPYDVYQKIRNAFDPDVLEFLKLFTF 236

Query: 622 M 622
           +
Sbjct: 237 L 237


>gnl|CDD|31278 COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI
           component in bacteria) [Carbohydrate transport and
           metabolism].
          Length = 574

 Score = 30.9 bits (70), Expect = 1.9
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 880 DFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQA 922
           D   E  RL  +L     EL ++K+K   +   EKA  +I +A
Sbjct: 36  DVEAEIERLDAALAAARAELEALKEKAAEDGGEEKA--AIFEA 76


>gnl|CDD|35490 KOG0269, KOG0269, KOG0269, WD40 repeat-containing protein [Function
           unknown].
          Length = 839

 Score = 30.4 bits (68), Expect = 2.6
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 10/69 (14%)

Query: 640 RNFITKFWNAIRFSK-----MKNARHSVSFVPQDV--KWIVNKWIIKRLATVINDVTVGM 692
              + + WN IR +        N     S +      K ++N    K L  +   V+  +
Sbjct: 464 TEDVAQIWNNIRLTYGSHHRKPNVISESSSMKNSSVEKPLMNS---KNLTQIAEHVSPSL 520

Query: 693 ENHRFNDVS 701
           +    ND+ 
Sbjct: 521 DTEYRNDIE 529


>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
           acyl-tRNA synthetase.  Class I amino acyl-tRNA
           synthetase (aaRS) catalytic core domain. These enzymes
           are mostly monomers which aminoacylate the 2'-OH of the
           nucleotide at the 3' of the appropriate tRNA. The core
           domain is based on the Rossman fold and is responsible
           for the ATP-dependent formation of the enzyme bound
           aminoacyl-adenylate. It contains the characteristic
           class I HIGH and KMSKS motifs, which are involved in ATP
           binding.
          Length = 143

 Score = 30.1 bits (68), Expect = 3.0
 Identities = 17/100 (17%), Positives = 26/100 (26%), Gaps = 6/100 (6%)

Query: 44  PPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSS 103
                 G LH+GH       D + +  R  G  V      D AG    +  +       +
Sbjct: 4   SGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAG---GLIGDPANKKGEN 60

Query: 104 LTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWS 143
                      I++  E+           L      CD  
Sbjct: 61  AKAFVERWIERIKEDVEYMFLQAADF---LLLYETECDIH 97


>gnl|CDD|36195 KOG0977, KOG0977, KOG0977, Nuclear envelope protein lamin,
           intermediate filament superfamily [Cell cycle control,
           cell division, chromosome partitioning, Nuclear
           structure].
          Length = 546

 Score = 29.9 bits (67), Expect = 3.2
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 21/86 (24%)

Query: 883 KERSRLKKSLEKVLDELSSIKKKLE----------NNQFVEKAPPSILQAE----KERFS 928
           +ER++L+  + K+ +EL  ++KKLE                 +  S L+AE    K R  
Sbjct: 106 RERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165

Query: 929 KVE--KKRISLENS-----LERIRML 947
            +E   KR+  ENS     L R R  
Sbjct: 166 ALEDELKRLKAENSRLREELARARKQ 191


>gnl|CDD|35457 KOG0236, KOG0236, KOG0236, Sulfate/bicarbonate/oxalate exchanger
           SAT-1 and related transporters (SLC26 family) [Inorganic
           ion transport and metabolism].
          Length = 665

 Score = 30.0 bits (67), Expect = 3.3
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 766 SPQDDMDKQGLLCHAQWPSLIIDDSESIEEVNWIIDL--ISKVRSIRTEMNVPLKAVVPL 823
             +   +    L      S+I+D S         ID    S ++S+  ++       V +
Sbjct: 554 KEEVLENSARELHENSIHSVILDCSGVSF-----IDTSGASALKSLFKDLK---TRGVQV 605

Query: 824 VFANIDAHVRKRLECHKCI 842
           + AN  + VR++L      
Sbjct: 606 LLANCPSSVREKLSKAGFF 624


>gnl|CDD|37196 KOG1985, KOG1985, KOG1985, Vesicle coat complex COPII, subunit
           SEC24/subunit SFB2 [Intracellular trafficking,
           secretion, and vesicular transport].
          Length = 887

 Score = 29.1 bits (65), Expect = 5.9
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 367 EKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQS 426
           +   L   TD Y+ +   C +S + ++  +  + Y D   L+  +  S   G + + P S
Sbjct: 454 DSQLLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSG--GQVYYYP-S 510

Query: 427 WDKS 430
           +D S
Sbjct: 511 FDGS 514


>gnl|CDD|146057 pfam03234, CDC37_N, Cdc37 N terminal kinase binding.  Cdc37 is a
           molecular chaperone required for the activity of
           numerous eukaryotic protein kinases. This domain
           corresponds to the N terminal domain which binds
           predominantly to protein kinases and is found N terminal
           to the Hsp (Heat shocked protein) 90-binding domain
           pfam08565. Expression of a construct consisting of only
           the N-terminal domain of Saccharomyces pombe Cdc37
           results in cellular viability. This indicates that
           interactions with the cochaperone Hsp90 may not be
           essential for Cdc37 function.
          Length = 172

 Score = 29.0 bits (65), Expect = 6.0
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 846 LSSGNIIFADCPPDRSIQIILDGMV--LFLAIGDFVD---FVKERSRLKKSLEKVLDELS 900
           + S N  F D       Q   + MV  LF  + D VD          L+K  +K+  E  
Sbjct: 84  MKSLNENFTDKENVEPEQPTYNEMVEDLFDQVKDEVDEKNGAALIEELQKHRDKLKKEQK 143

Query: 901 SIKKKLE 907
            + KKL+
Sbjct: 144 ELLKKLD 150


>gnl|CDD|144245 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y). 
          Length = 291

 Score = 28.8 bits (65), Expect = 8.2
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 6/44 (13%)

Query: 573 IEPFHIVYMHALVRDKNGQKMSKSKGNVV-----DPIDVIDQYG 611
            +P  +     L     G+KMSKS GN       +   V  +  
Sbjct: 179 KKPVGL-TNPLLTGLDGGKKMSKSAGNSAIFLDDEKESVYKKIQ 221


>gnl|CDD|39791 KOG4591, KOG4591, KOG4591, Uncharacterized conserved protein,
           contains BTB/POZ domain [General function prediction
           only].
          Length = 280

 Score = 28.6 bits (63), Expect = 8.3
 Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 20/182 (10%)

Query: 273 VGRLIPIVSDVYPDPEFGDGAVKV-------TPAHDFNDFEIAKRHGLGFINILTPEAKI 325
           + RL+ I +D+    +F D   K         PAH F     A+     F N    +++ 
Sbjct: 50  ISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKF--VLAARSDFWKFANGGDEKSEE 107

Query: 326 FLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHC 385
              ++  F          R I++  + +D       ++ L E +N   + +  +      
Sbjct: 108 LDLDDADFEAFHTA---IRWIYT--DEIDFKEDDEFLLELCELANRF-QLELLKERCEKG 161

Query: 386 ERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISR 445
             + + ++ CI  ++Y  A+   E   R   N     I  +WD         +    + +
Sbjct: 162 LGALLHVDNCI--KFYEFAE---ELNARQLMNVAAEIIAGAWDDLGKADFAQMSAALLYK 216

Query: 446 QI 447
            I
Sbjct: 217 LI 218


>gnl|CDD|111754 pfam02900, LigB, Catalytic LigB subunit of aromatic ring-opening
           dioxygenase. 
          Length = 265

 Score = 28.4 bits (64), Expect = 8.3
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 491 VRKMIKDGNISDLLK-RDEDVLDTWFSSA------LWPFASLGWPEQTAELKTYYPTSVL 543
              ++K G++  L    +E                +    +LG  E  AE+  Y    + 
Sbjct: 201 FLDLLKSGDLEALCAMLNEAPDAAAGHPEEELLPWVVALGALGGDEIRAEVFGYGAVPMS 260

Query: 544 VTGFD 548
           + GF 
Sbjct: 261 IAGFG 265


>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail.  The myosin molecule is a
           multi-subunit complex made up of two heavy chains and
           four light chains it is a fundamental contractile
           protein found in all eukaryote cell types. This family
           consists of the coiled-coil myosin heavy chain tail
           region. The coiled-coil is composed of the tail from two
           molecules of myosin. These can then assemble into the
           macromolecular thick filament. The coiled-coil region
           provides the structural backbone the thick filament.
          Length = 859

 Score = 28.5 bits (64), Expect = 9.9
 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 18/77 (23%)

Query: 884 ERSRLKKSLEKVL----DELSSIKKKLENNQ-FVEKAPPSI-------------LQAEKE 925
           E  R K+ LE  L     ELS +  KLE+ Q  V +    I             L+AE+ 
Sbjct: 1   ELERQKRELENQLYRKESELSQLSSKLEDEQALVAQLQKKIKELEARIRELEEELEAERA 60

Query: 926 RFSKVEKKRISLENSLE 942
             +K EK R  L   LE
Sbjct: 61  ARAKAEKARADLSRELE 77


>gnl|CDD|153412 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding domain of
           bacterial and eukaryotic mitochondrial leucyl tRNA
           synthetases.  This domain is found in leucyl tRNA
           synthetases (LeuRS), which belong to the class Ia
           aminoacyl tRNA synthetases. It lies C-terminal to the
           catalytic core domain. In contrast to other class Ia
           enzymes, the anticodon is not used as an identity
           element in LeuRS (with exceptions such as Saccharomyces
           cerevisiae and some other eukaryotes). No
           anticodon-binding site can be defined for this family,
           which includes bacterial and eukaryotic mitochondrial
           members, as well as LeuRS from the archaeal
           Halobacteria. LeuRS catalyzes the transfer of leucine to
           the 3'-end of its tRNA.
          Length = 117

 Score = 28.3 bits (64), Expect = 10.0
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 18/128 (14%)

Query: 636 IAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENH 695
           + G   F+ + W     +++  A  + +   +  +   +K + ++L   I  VT  +E  
Sbjct: 6   VEGAYRFLNRVWR--LVTELAEALAAPAAAAELSE--EDKELRRKLHKTIKKVTEDIERL 61

Query: 696 RFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIP 755
           RFN   A L   V + L        K    Q  + ++ E L            LL P  P
Sbjct: 62  RFNTAIAALMELV-NALYK-----YKKKDAQ-HAAVLREALETL-------VLLLAPFAP 107

Query: 756 FVTEDLYS 763
            + E+L+ 
Sbjct: 108 HIAEELWE 115


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0774    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 12,144,021
Number of extensions: 680973
Number of successful extensions: 1870
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1785
Number of HSP's successfully gapped: 91
Length of query: 947
Length of database: 6,263,737
Length adjustment: 103
Effective length of query: 844
Effective length of database: 4,038,010
Effective search space: 3408080440
Effective search space used: 3408080440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)