RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (947 letters) >gnl|CDD|30871 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 877 Score = 1035 bits (2679), Expect = 0.0 Identities = 421/949 (44%), Positives = 585/949 (61%), Gaps = 81/949 (8%) Query: 4 DKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQ 63 KTYD IE+K +KW F+ D P F I PPPNVTGSLHMGHA N T+Q Sbjct: 2 PKTYDPKEIEEKWYKKWEESGYFKPD--PNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQ 59 Query: 64 DIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKK 123 DI+ R++RMRG NVLW PGTDHAGIATQ+ VE +L A+ +TR D+GR+ F++K WEWK+ Sbjct: 60 DILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEG-ITRHDLGREEFLKKCWEWKE 118 Query: 124 ESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSL 183 ESGG+I QL+RLG S DWSRERFTMD G+S AV+ AFV LY+ GLIYR +R+VNW P Sbjct: 119 ESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKC 178 Query: 184 KTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPE 243 +T++SD+EV KEV+G L+Y++YPL +G Y++V+TTRPE Sbjct: 179 RTAISDIEVEYKEVEGKLYYIKYPLADGD--------------------GYLVVATTRPE 218 Query: 244 TMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFN 303 T+ GD A+AVHPDD RYK L+GK LP+VGR IPI++D Y DPEFG GAVK+TPAHDFN Sbjct: 219 TLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDFN 278 Query: 304 DFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIV 363 D+E+ KRH L INI+ + +I EF GLD F AR KIV Sbjct: 279 DYEVGKRHNLPLINIIDEDGRI-----------------NEEAAGEFAGLDRFEARKKIV 321 Query: 364 SLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFI 423 LE+ LL K + ++H V HCER G IEP +++QW++ LA+ A+ + K+G + F+ Sbjct: 322 EDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFV 381 Query: 424 PQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPD-GKLFVENTEDAALRSAIDYYLS 482 P+ +K Y +W+ENI+ WCISRQ+WWGH+IPVWY + G + V E +A Sbjct: 382 PERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEPEDPAAAEKCPKE 441 Query: 483 QDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSV 542 + L++DEDVLDTWFSS+LWPF++LGWPE+T +LK +YPT + Sbjct: 442 E--------------------LEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDL 481 Query: 543 LVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVD 602 LVTG DI+FFWVARM+M GL+ + PF VY+H LVRD+ G+KMSKSKGNV+D Sbjct: 482 LVTGHDIIFFWVARMIMRGLHLTGEV------PFKDVYIHGLVRDEQGRKMSKSKGNVID 535 Query: 603 PIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSV 662 P+DVID+YGADALRF + +A GRDIN D +R+ GYRNF+ K WNA RF M Sbjct: 536 PLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGP 595 Query: 663 SFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKS 722 + + ++WI+ RL + +VT ++N+RF++ + LY F+W++ CDWY+E K Sbjct: 596 DDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKP 655 Query: 723 ILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQW 782 L + E + YVL + +LLHP +PF+TE+++ + + + A W Sbjct: 656 RLYGGEEEKR-AARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGTE------SIHLASW 708 Query: 783 PSLIID--DSESIEEVNWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHK 840 P + + D E+ +E + ++IS +R++R EMN+ A + +V + RLE ++ Sbjct: 709 PEVDEELIDEEAEKEFELLKEIISAIRNLRAEMNLSPSAPLKVVLVG-SEELEDRLEANE 767 Query: 841 CIIDRLSSGNIIF----ADCPPDRSIQIILDGMVLFLAIGDFVDFVKERSRLKKSLEKVL 896 I L++ + P + ++ G LFL + +D E +RL+K LEK+ Sbjct: 768 DDIKGLANLEELEILSPDPEEPPVEVTAVVGGAELFLPLAGLIDLAAELARLEKELEKLE 827 Query: 897 DELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIR 945 E+ I+KKL N FV KAP +++ EKE+ ++ + K LE L ++ Sbjct: 828 KEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEERLAVLK 876 >gnl|CDD|35653 KOG0432, KOG0432, KOG0432, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 995 Score = 839 bits (2170), Expect = 0.0 Identities = 374/996 (37%), Positives = 549/996 (55%), Gaps = 94/996 (9%) Query: 3 IDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTI 62 + Y A++E + W F+ + P G GVF I +PPPNVTGSLH+GHA I Sbjct: 42 LPAAYSPAYVESAWYKWWEKQGFFKPEYGPNPG-GVFVIPLPPPNVTGSLHIGHALTVAI 100 Query: 63 QDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWK 122 QD + R+ RM G VLW PGTDHAGIATQ+ VE +L + TR D+GR+ F+++VWEWK Sbjct: 101 QDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWK 160 Query: 123 KESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPS 182 +E GG I +QLKRLGAS DW RE FTMD +S AV AFV L+++GLIYR R+VNW P+ Sbjct: 161 EEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPA 220 Query: 183 LKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFD---DDAKPIDWEVRDYIIVST 239 L++++SD+EV E+ G + P Y ++F A P++ + I+V+T Sbjct: 221 LRSAISDIEVESVEIPGRT-LLSVP-----GYDTKVEFGVLYSFAYPVEGS-DEEIVVAT 273 Query: 240 TRPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPA 299 TRPET+ GDVA+AVHPDD RYK L GK+ P GR +PI+ D+ D EFG GAVK+TPA Sbjct: 274 TRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKLPIICDIAVDMEFGTGAVKITPA 333 Query: 300 HDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAAR 359 HD ND+E+ KRH L FINI T + + N+ EF+G+ F AR Sbjct: 334 HDPNDYEVGKRHNLEFINIFTDDGLL------------------NNVCGEFKGMKRFEAR 375 Query: 360 SKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGC 419 K+V L++ L +++ ++P C RSG IEP + QW++ K +A+ A+++ ++G Sbjct: 376 EKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGK 435 Query: 420 LSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDY 479 L +P+ +K +Y WLENI+ WCISRQ+WWGH+IP ++ E DY Sbjct: 436 LEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEE----------DY 485 Query: 480 YLSQDNDMTVKVRKMIKDGNISDL-LKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYY 538 ++ ++ + + K G + L++D DVLDTWFSS LWPF++LGWPE+T + K +Y Sbjct: 486 WVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFY 545 Query: 539 PTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKG 598 P S+L TG DILFFWVARM+M+GL G PF V +H LVRD +G+KMSKS G Sbjct: 546 PLSLLETGHDILFFWVARMVMLGLKLT------GELPFKEVLLHGLVRDAHGRKMSKSLG 599 Query: 599 NVVDPIDVID-------------------------------------QYGADALRFYFSI 621 NV+DP+DVID + G DALRF Sbjct: 600 NVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCS 659 Query: 622 MAVQGRDINLDLERIAGYRNFITKFWNAIRFSKM---KNARHSVSFVPQDVKWIVNKWII 678 QGRDINLD+ R+ GYR+F K WNA RF+ +N S + + +V++WI+ Sbjct: 660 YTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWIL 719 Query: 679 KRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSC 738 RLA + +V +E F+ ++ LY F +LCD Y+E K +L L E Sbjct: 720 SRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDSEALAYEARRV 779 Query: 739 FSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLII--DDSESIEEV 796 L N +LLHP +PF+TE+L+ + + + + +PS + E Sbjct: 780 LYRCLDNGLRLLHPFMPFITEELWQRLPRRKGSKPAS-ISVSPYPSSNELWRNEELESAF 838 Query: 797 NWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHKCIIDRLSSGNIIFADC 856 ++ + +RS+R E N+ K + A+ D + L+ I L++ ++ Sbjct: 839 ELVLAITRAIRSLRAEYNLSPKPRGSVFIASSDEEDKSILKEFLDEISTLTNLELVSISS 898 Query: 857 PPDRSIQ-----IILDGMVLFLAIGDFVDFVKERSRLKKSLEKVLDELSSIKKKLENNQF 911 P + Q + ++L + VD E +L K LEK+ +L ++ ++ ++ + Sbjct: 899 PAEEDAQGCALSVASSDCQVYLPLKGLVDPDSEIQKLAKKLEKLQKQLDKLQARISSSDY 958 Query: 912 VEKAPPSILQAEKERFSKVEKKRISLENSLERIRML 947 EKAP + + KE+ ++E + +L+ +L ++ L Sbjct: 959 QEKAPLEVKEKNKEKLKELEAEIENLKAALANLKSL 994 >gnl|CDD|143905 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V). Other tRNA synthetase sub-families are too dissimilar to be included. Length = 606 Score = 636 bits (1643), Expect = 0.0 Identities = 256/651 (39%), Positives = 347/651 (53%), Gaps = 84/651 (12%) Query: 18 EKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNV 77 + W+ F+ + G F I PPN TG LH+GHA N T++DI+IR++RM+G +V Sbjct: 4 QFWDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDV 63 Query: 78 LWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLG 137 LW PG DH G+ T+ VE +L + R +GR+ F EK EWK E I SQ KRLG Sbjct: 64 LWVPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLG 123 Query: 138 ASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEV 197 S DW RE FT+D G+ AV FV L+ GLIYR K+ VNW P+L T++S+ EV K+V Sbjct: 124 VSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEYKDV 183 Query: 198 DGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHPD- 256 G +V +PL D +++ TT P T+ G+ A+AV+P+ Sbjct: 184 KGPSIHVAFPL------------ADGKGA-------SLVIWTTTPWTLPGNTAVAVNPEF 224 Query: 257 ----------------------------------DYRYKELIGKYATLPIVGRLIPIVSD 282 D+R KELIGK P V R IPI++D Sbjct: 225 NYVKIRVTGEYYILAEALLKSLYKKKKEDGEILEDFRGKELIGKKYIHPFVNREIPIIAD 284 Query: 283 VYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDE 342 Y D EFG GAV + PAH +D+E+ KRH L FIN + ++ ++ E Sbjct: 285 DYVDMEFGTGAVHIAPAHGEDDYEVGKRHNLEFINPVD--------DDGTYNEE------ 330 Query: 343 ARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYL 402 EF+GL F AR KIV LL + LL K + H PHC RSG I T QW++ Sbjct: 331 ----APEFQGLKRFKARKKIVELLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFV 386 Query: 403 DAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGK 462 K LAE+A+++ + + F+P+ +K Y WLENIQ WCISRQ WWGH IP WYS D Sbjct: 387 RMKNLAEAALKAVEK--VQFVPKWGEKRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTG 444 Query: 463 LFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPF 522 L + + + + + ++ G L++DEDVLDTWFSS WPF Sbjct: 445 EVYVRGSLKELVAGREEEEGIEAWLHRDAKDLLGKGA--GTLEQDEDVLDTWFSSGSWPF 502 Query: 523 ASLGWPEQTA-ELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYM 581 ++LG+P E K ++P +L+ G D W RM+++G G P+ V + Sbjct: 503 STLGYPFTNTPEFKRFFPADMLLEGSDQTRGWFYRMIVLGTAL------TGSAPYKNVLV 556 Query: 582 HALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLD 632 H LVRD+ G+KMSKS GNV+DP+DVID+YGADALR + + GRDIN Sbjct: 557 HGLVRDEQGRKMSKSLGNVIDPLDVIDKYGADALRLWL-ASSDYGRDINFS 606 >gnl|CDD|30409 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 933 Score = 347 bits (891), Expect = 1e-95 Identities = 233/906 (25%), Positives = 373/906 (41%), Gaps = 148/906 (16%) Query: 7 YDFAFIEQKSVEKWNSVDAFR-IDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDI 65 + E K ++ W D + I G F + PP G++H+GHA N ++DI Sbjct: 18 ANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDI 77 Query: 66 MIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEK----VWEW 121 ++R++ M+G +V + PG D G+ ++ VE +L E G + F EK E Sbjct: 78 IVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKL-GIGKKDIESFGVEEFREKCREFALEQ 136 Query: 122 KKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDP 181 E Q KRLG DW TMD +V AF LY+ GL+YR + V W P Sbjct: 137 VDEQ----KEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSP 192 Query: 182 SLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTR 241 +T++++ EV +V YV++P+ + D++A Y+++ TT Sbjct: 193 RCETALAEAEVEYGDVKDPSIYVKFPVKDE-------GLDENA---------YLVIWTTT 236 Query: 242 PETMFGDVAIAVHPD------------------------------------DYRYKELIG 265 P T+ ++AIAVHPD ++ EL G Sbjct: 237 PWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEG 296 Query: 266 KYATLPIVG----RLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTP 321 P R P++ + + G G V P H D+E+ K++GL + +L P Sbjct: 297 LRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGL--LEVLNP 354 Query: 322 EAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHI 381 + +N + E ++EGL A KI+ L++ L K++ H Sbjct: 355 -----VDDNGRYTEEA----------PKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHS 399 Query: 382 VPHCERSGVTIEPCI---TEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENI 438 PHC R+ P I T QW++ L + ++ ++++P + +EN Sbjct: 400 YPHCWRTK---TPLIYRATPQWFVSVDKLRDKMLKEINK--VNWVPDWGKNRFGNMVENR 454 Query: 439 QPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDG 498 WCISRQ +WG IPVWY + + TE+ +D R I + Sbjct: 455 PDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDW---HRPDIDEL 511 Query: 499 NISDL-----LKRDEDVLDTWFSSALWPFASLG------WPEQTAELKTYYPTSVLVTGF 547 +R DVLD WF S P+A L +P A+ + G Sbjct: 512 LPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPRENLKFPALFADF--------YLEGS 563 Query: 548 DILFFWVARMMMMG-LYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDV 606 D W ++ F G P+ V H V D+ G+KMSKS GNVVDP DV Sbjct: 564 DQTRGWFYSSLLTSTALF-------GRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDV 616 Query: 607 IDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKM--KNARHSVSF 664 ID+YGAD LR + + D+ E + R K N RF + Sbjct: 617 IDKYGADILRLWV-ASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDA 675 Query: 665 VPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSIL 724 V + +++WI+ RL +++ +V EN+ F+ V L FV ++L +WY++ IK L Sbjct: 676 VLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRL 735 Query: 725 --NQKDSELVSETLSCFS---YVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCH 779 DS + + + ++L + +LL PI+PF E+++ ++ + + L Sbjct: 736 YTEAADSP---DRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGERKEESVHL--- 789 Query: 780 AQWPSLIIDDSESIEEVNWIIDLISKVRSIRTEMNVPLKAVVP--LVFANIDAHVRKRLE 837 WP EV+ + + + R E + L+ V L A ++ + L Sbjct: 790 EDWP-----------EVDEELIDVEAALAARWEALLKLRDPVNKALEAARLEKVIGSSLN 838 Query: 838 CHKCII 843 I Sbjct: 839 AKVVIY 844 >gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382 Score = 335 bits (861), Expect = 3e-92 Identities = 131/248 (52%), Positives = 163/248 (65%), Gaps = 22/248 (8%) Query: 385 CERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCIS 444 C RSG IEP + QW++ K LA+ A+ + K G + F+P+ +K Y WLENI+ WCIS Sbjct: 156 CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCIS 215 Query: 445 RQIWWGHQIPVWYSPD-GKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDL 503 RQ+WWGH+IP WY D G V ED A+ K + Sbjct: 216 RQLWWGHRIPAWYCKDGGHWVVAREEDEAID---------------KAAPEACVPCGGEE 260 Query: 504 LKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLY 563 LK+DEDVLDTWFSS+LWPF++LGWPE+T +LK +YPTS+LVTG DI+FFWVARM+M GL Sbjct: 261 LKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLK 320 Query: 564 FMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMA 623 G PF VY+H LVRD++G+KMSKS GNV+DP+DVID YGADALRF + A Sbjct: 321 LT------GKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAA 374 Query: 624 VQGRDINL 631 QGRDINL Sbjct: 375 TQGRDINL 382 Score = 274 bits (704), Expect = 6e-74 Identities = 104/156 (66%), Positives = 122/156 (78%), Gaps = 1/156 (0%) Query: 37 GVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVES 96 VF I PPPNVTGSLHMGHA N TIQDI+ R++RM+G NVLW PGTDHAGIATQ+ VE Sbjct: 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVE- 59 Query: 97 RLFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNA 156 + TR D+GR+ F+EK WEWK+ESGG I QLKRLGAS DWSRE FTMD G+S A Sbjct: 60 KKLGIEGKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRA 119 Query: 157 VRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEV 192 V+ AFV LY+ GLIYRD R+VNW P L+T++SD+EV Sbjct: 120 VQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV 155 >gnl|CDD|35655 KOG0434, KOG0434, KOG0434, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 1070 Score = 230 bits (589), Expect = 1e-60 Identities = 223/1000 (22%), Positives = 401/1000 (40%), Gaps = 149/1000 (14%) Query: 5 KTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQD 64 + ++F E+K +E W +DAF + G F PP TG H GH +TI+D Sbjct: 6 ENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKD 65 Query: 65 IMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEK------- 117 I+ R+ G +V + G D G+ + ++ +L +G D + + Sbjct: 66 IVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMR 125 Query: 118 -VWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRI 176 EW+K RLG D+ + T+ +V F L++ GL+YR ++ Sbjct: 126 YSSEWEKTVE--------RLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKV 177 Query: 177 VNWDPSLKTSVSDLEVIQ--KEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDY 234 + + + T +S+ E Q K+V +V +PL+ D + + W Sbjct: 178 MPYSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIG----------DPNVSLVAW----- 222 Query: 235 IIVSTTRPETMFGDVAIAVHPDDYRY---------------KELIGKYATLP------IV 273 TT P T+ ++A+ V+PD ++Y + +G+ P I+ Sbjct: 223 ----TTTPWTLPSNLALCVNPD-FQYVKIKDKTTGKKYILMESRLGELYKNPKNDNYEIL 277 Query: 274 GRL-------------------------IPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIA 308 R ++SD Y + G G V PA D+ Sbjct: 278 ERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRAC 337 Query: 309 KRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEK 368 +G+ + L P + E+ F + ++F G A I+ L+ Sbjct: 338 VANGIIRKDSLPPCP---VDESGLFTSEV----------TDFAGQYVKDADKLIIRSLKA 384 Query: 369 SNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSW- 427 S L K H P C RS + W++ K + + +R+ N ++PQ+ Sbjct: 385 SGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRN--NMKTHWVPQNIK 442 Query: 428 DKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFV-----ENTEDAALRSAIDYYLS 482 +K + WL+N + W ISR +WG IP+W S D + V + E+ + D + Sbjct: 443 EKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLHRE 502 Query: 483 QDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWP-EQTAELKTYYPTS 541 + +T+ +K L R +V D WF S P+A +P E E + +P Sbjct: 503 SIDHITIPSKKGKGV------LHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPAD 556 Query: 542 VLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVV 601 + G D W ++++ G PF V ++ LV ++G+KMSK N Sbjct: 557 FIAEGLDQTRGWFYTLLVLSTALF------GKPPFKNVIVNGLVLAEDGKKMSKRLKNYP 610 Query: 602 DPIDVIDQYGADALRFYF-SIMAVQGRDINLDLERIAG-YRNFITKFWNAIRFSKMKNAR 659 DP +I++YGADALR Y + V+ ++ E + ++ + ++N+ RF A Sbjct: 611 DPSLIINKYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAAL 670 Query: 660 H----SVSFVPQDV---KWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDEL 712 FV D ++++WI+ +++ V M+ +R V L +F+ DEL Sbjct: 671 LKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFI-DEL 729 Query: 713 CDWYVEFIKSILNQKDSELVSET-LSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDM 771 +WY+ F + L ++ E L+ VL+ + +++ P PF TE +Y ++ + Sbjct: 730 TNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPI 789 Query: 772 DKQGL------LCHAQWPSLIIDDSESIEEVNWIIDLISKVRSIRTEMNVPLKA-VVPLV 824 DK P + D V + +I R+IR + LK + L+ Sbjct: 790 DKNEKSERSVHFLSYPTPKEELIDETVERRVERMQSIIDLARNIRERNTISLKTPLKELI 849 Query: 825 FANIDAHVRKRLEC-HKCIIDRLSSGNIIFADCPPDRSIQIILDGMVLFLAIGDFVDFVK 883 + D + ++ + I++ L+ ++F + ++L F +G Sbjct: 850 VIHSDEEYLEDIKSLERYILEELNVREVVF--TSDEEKYGVVLKAEPDFPVLG------- 900 Query: 884 ERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAE 923 +LKK ++KV L + + E +F++ + E Sbjct: 901 --KKLKKDMKKVKKALKQVTSE-EVEEFLKSGKLVVDGHE 937 >gnl|CDD|35654 KOG0433, KOG0433, KOG0433, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 937 Score = 227 bits (580), Expect = 1e-59 Identities = 185/804 (23%), Positives = 321/804 (39%), Gaps = 127/804 (15%) Query: 50 GSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDI 109 G+LH+GHA N ++DI+ R +GK+ L+ PG D G+ + T A SSLT + Sbjct: 68 GNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTK-----ALSSLTESEG 122 Query: 110 GRDAF--IEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKD 167 R K + E+ + +R G + DW T A + F LY+ Sbjct: 123 SRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEK 182 Query: 168 GLIYRDKRIVNWDPSLKTSV--SDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAK 225 GL+YR + V W PS +T++ S+LE + Y R+ L I F A Sbjct: 183 GLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSA-YFRFKL---------INFSSSAH 232 Query: 226 PIDWEVRD-YIIVSTTRPETMFGDVAIAVHPD---------------------------- 256 D ++ Y +V TT P T+ + AI+V+ Sbjct: 233 SEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFE 292 Query: 257 ---DYRYK--------ELIGKYATLPIVGRL-IPIVSDVYPDPEFGDGAVKVTPAHDFND 304 D + K LIG+ P+ L +PI+ + G G V PAH F D Sbjct: 293 KSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFED 352 Query: 305 FEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVS 364 + +A GL + F+ + + + + E + ++ Sbjct: 353 YLVAISKGL--------RVESFVDSRGCYTREAGHDLDGKEVLGE--------GQKIVLR 396 Query: 365 LLEKSNLLDKTDSYRHIVPHCERSGVTIEPCI---TEQWYLDAKVLAESAIRSAKNGCLS 421 LL ++ + Y H P+ R T +P I +EQW++D + + + A + + + Sbjct: 397 LL--NHDIVHVSKYVHSYPYDWR---TKKPVIIRASEQWFIDVEEIKKRASMALDD--VK 449 Query: 422 FIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAAL------RS 475 P D + + WCISRQ WG IP Y +G ++ N+ + Sbjct: 450 VAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQE 509 Query: 476 AID--YYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSAL-WPFASLGWPEQTA 532 D + + + + + + I D I+ K+ D++D WF S W E A Sbjct: 510 GSDVWWEIDVEELLPEEEVREIPD--IASEYKKGTDIMDVWFDSGSSWSAVLDNEREHVA 567 Query: 533 ELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQK 592 + V + G D W ++ + A P+ V +H D+NG K Sbjct: 568 D--------VYLEGVDQFRGWFQSSLLTSVAVQNKA------PYKKVIVHGFTLDENGNK 613 Query: 593 MSKSKGNVVDPIDVID------QYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKF 646 MSKS GNVVDP V D YGAD LRF+ + G + + + + + KF Sbjct: 614 MSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGSENTG-ESKIGPKILDQVDEKLIKF 672 Query: 647 WNAIRF--SKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVL 704 N RF +++ P ++++++++L ++ + +++F V L Sbjct: 673 RNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDL 732 Query: 705 YRFVWDELCDWYVEFIKSIL--NQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLY 762 +F+ L +Y + +K L ++ SE + ++L+N+ ++ PI+P + E+++ Sbjct: 733 QQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVW 792 Query: 763 SHVSPQDDMDKQGLLCHAQWPSLI 786 H+ + + +W L Sbjct: 793 QHL----PGSHEKIF-RLKWEDLH 811 >gnl|CDD|30841 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 814 Score = 219 bits (560), Expect = 2e-57 Identities = 198/900 (22%), Positives = 333/900 (37%), Gaps = 216/900 (24%) Query: 4 DKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAM-PPPNVTGSLHMGHAFNTTI 62 Y+ IE+K ++W F D + + M P P+ G+LH+GH N TI Sbjct: 2 MSRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPS--GALHVGHVRNYTI 59 Query: 63 QDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWEWK 122 D++ R++RM+G NVL G D A + E+ A IG D +W Sbjct: 60 GDVIARYKRMQGYNVLHPMGWD----AFGLPAEN--AA------IKIGTDPA-----KWT 102 Query: 123 KESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPS 182 + + QLK LG S DW RE T D ++ F+ LY+ GL YR + VNW P Sbjct: 103 YYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPV 162 Query: 183 LKTSVSDLEVI------------QKEVDGNLWYVR------------YPL-------VEG 211 T +++ +VI KE+ W+ + L V+G Sbjct: 163 DGTVLANEQVIDGGCWRCGEPVEIKEL--TQWFFKITDYADELLDDLDKLATLWPETVKG 220 Query: 212 VTYRHPIKFDDDAKPIDWEVRDY-----IIVSTTRPETMFGDVAIAVHPDDYRYKELI-- 264 + R+ I + + + + V I V TTRP+T+FG + + P+ +L+ Sbjct: 221 MQ-RNWIGPSEGYE-VAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTN 278 Query: 265 ---------------------------------GKYATLPIVGRLIPIVSDVYPDPEFGD 291 G YA P+ G IP+ Y E+G Sbjct: 279 PQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGT 338 Query: 292 GAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFE 351 GAV PAHD D E A ++ L ++ PE + + + VL + + Sbjct: 339 GAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTV---GKKVYEGEGVLINSG-----GLD 390 Query: 352 GLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESA 411 GLD A+ KI L K L QW+++ + Sbjct: 391 GLDYEEAKVKIRCGLVKRGL--------------------------GQWFVNYR------ 418 Query: 412 IRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDA 471 ++ W SRQ +WG IP+ + D + + Sbjct: 419 --------------------------LRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWL 452 Query: 472 ALRS-AIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALW-------PFA 523 ++ L + + + + + R+ D +DT+ S W P Sbjct: 453 PVKLPERVRGLGTGSPLP-WDEEWVIESLPDSTAYRETDTMDTFIDS-SWYYLRFFDPIF 510 Query: 524 SLGWPEQTAELKTYYPTSVLVTGFD-----ILF--FWVARMMMMGLYFMKDAEG-KGIEP 575 P E +YP + + G + +L+ F+ + D EP Sbjct: 511 LGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHK--------ALFDEGLVPKDEP 562 Query: 576 FHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLER 635 F + +V + G+KMSKSKGNVVDP + +++YGAD +R Y A +D+ Sbjct: 563 FKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESG 622 Query: 636 IAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENH 695 + G R F+ + WN ++ K ++ +W++++ IK++ Sbjct: 623 VEGARRFLQRVWNLVKEHLEKLVEELTKEQGKEDRWLLHR-TIKKVTEDFE------ARQ 675 Query: 696 RFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIP 755 FN A L + Y+ + D +++ E L + +LL P P Sbjct: 676 TFNTAIAALMELL--NALRKYLRRTEG-----DRKVLREALETWV-------RLLAPFAP 721 Query: 756 FVTEDLYSHVSPQDDMDKQGLLCHAQWPSLIIDDSESIEEVNWIIDLISKVRSIRTEMNV 815 + E+L+ ++ +G + +A WP D+ +E+ I+ ++ R + Sbjct: 722 HIAEELWE------ELGNEGFVSNAPWP--EPDEEALVEDEVEIVVQVNGKVRAREVVAA 773 >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 Score = 163 bits (415), Expect = 2e-40 Identities = 75/236 (31%), Positives = 102/236 (43%), Gaps = 61/236 (25%) Query: 396 ITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPV 455 ITEQW+ D E +++ + G +P+ WLE++ W ISRQ +WG +P Sbjct: 138 ITEQWFFDMPKFKEKLLKALRRG--KIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP- 194 Query: 456 WYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWF 515 EDV D WF Sbjct: 195 ----------------------------------------------------EDVFDVWF 202 Query: 516 SSALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEP 575 S + P SLG+PE+ K YP + G DIL W + M + G P Sbjct: 203 DSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALF------GEIP 256 Query: 576 FHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL 631 + +H V D+ GQKMSKSKGNV+DP DV+++YGADALR+Y + +A G DI L Sbjct: 257 PKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312 Score = 138 bits (349), Expect = 8e-33 Identities = 51/140 (36%), Positives = 69/140 (49%), Gaps = 4/140 (2%) Query: 38 VFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESR 97 F + PPP GSLH+GHA I D + R++RMRG V + PG D G+ ++ E + Sbjct: 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60 Query: 98 LFAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAV 157 ++ I + F E E+ +E G +RLG S DWS E T + S AV Sbjct: 61 G----GRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAV 116 Query: 158 RNAFVVLYKDGLIYRDKRIV 177 F LY+ GLIYR V Sbjct: 117 ELIFSRLYEKGLIYRGTHPV 136 >gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. Length = 135 Score = 162 bits (412), Expect = 4e-40 Identities = 48/134 (35%), Positives = 74/134 (55%) Query: 631 LDLERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTV 690 D +R+ G RNF K WNA RF M + + ++WI+ RL + +VT Sbjct: 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTE 60 Query: 691 GMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLL 750 +EN+RF++ + LY F W++ CDWY+E +K L +D E + YVL + +LL Sbjct: 61 ALENYRFSEAATALYEFFWNDFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLL 120 Query: 751 HPIIPFVTEDLYSH 764 HP +PF+TE+L+ Sbjct: 121 HPFMPFITEELWQR 134 >gnl|CDD|35656 KOG0435, KOG0435, KOG0435, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 876 Score = 146 bits (370), Expect = 2e-35 Identities = 170/742 (22%), Positives = 262/742 (35%), Gaps = 204/742 (27%) Query: 10 AFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAM-PPPNVTGSLHMGHAFNTTIQDIMIR 68 A IE+ + F D + ++M P P +G+LH+GH TI DI+ R Sbjct: 33 AMIEKHWKQYLKDGFPFSKDS--DKSKKKYILSMFPYP--SGALHIGHVRVYTISDILAR 88 Query: 69 FERMRGKNVLWQPGTDHAGI-ATQITVESRLFAQSSLTREDIGRDAFIEKVWEWKKESGG 127 F RM+G NV+ G D G+ A +E + S W + Sbjct: 89 FYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPAS------------------WTINNIA 130 Query: 128 SILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSV 187 + QLK LG S DW RE T + + F+ L++ GL Y+ + VNWDP KT + Sbjct: 131 KMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVL 190 Query: 188 SDLEVIQKEVDGNLW---------YVRYPLVEGVTYRHPIKFDDDAKPIDW-EVRDY--- 234 ++ +V + DG W +R ++ Y + + P +W EV+D Sbjct: 191 ANEQV---DADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLP-EWPEVKDMQRN 246 Query: 235 -----------------------IIVSTTRPETMFGDVAIAVHPD------DYRYKELIG 265 + V TTRPET+FG + + P D KE + Sbjct: 247 WIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLS 306 Query: 266 K------------YATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGL 313 K A P+ GR IP+V Y +G GAV P HD D E+A++ G+ Sbjct: 307 KSDLPQKGVQLPCQAKNPVTGRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGI 366 Query: 314 GFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLD 373 +I E F K +NL Sbjct: 367 KWI-----------ICIEVI----------------------FTNFGKKNEQKAFTNLDI 393 Query: 374 KTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYE 433 + ++ + ER GV + ++ + Sbjct: 394 RQNAALKLFQFAERKGV-------------GGYVVSYKLK-------------------D 421 Query: 434 WLENIQPWCISRQIWWGHQIPVWYSPD-GKLFVENTEDAALRSAIDYYLSQDNDMTVKVR 492 WL ISRQ +WG IP+ + D G + V +E ++ + + ++ Sbjct: 422 WL-------ISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADE 474 Query: 493 KM-IKDGNISDLLKRDEDVLDTWFSSALWPFASLG-----WPEQTAELKTYYPTSVLVTG 546 + + + KR+ D +DT+ S+ + L P A+ K P V + G Sbjct: 475 WVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGG 534 Query: 547 FD--ILFFWVARMMMMGLYFMKDAE-GKGIEPFHIVYMHALVRDKNG------------- 590 + +L AR + F+KD EPF + +VR K Sbjct: 535 KEHAVLHLLYARFIA---KFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEE 591 Query: 591 ------------------------QKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQG 626 +KMSKSK N VDP DV+ +YG D R Y A Sbjct: 592 VQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPR 651 Query: 627 RDINLDLERIAGYRNFITKFWN 648 IN + I G + ++ + W Sbjct: 652 DPINWNESAIPGIKRWLQRIWA 673 >gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 338 Score = 131 bits (333), Expect = 7e-31 Identities = 69/236 (29%), Positives = 107/236 (45%), Gaps = 48/236 (20%) Query: 397 TEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVW 456 T QW++ + + + + +++IP+ + WLEN + WCISRQ +WG IPVW Sbjct: 150 TPQWFIRVTKIKDRLLEANDK--VNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVW 207 Query: 457 YSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFS 516 Y D L++R DVLD WF Sbjct: 208 YCEDCG--------------------------------------EVLVRRVPDVLDVWFD 229 Query: 517 SALWPFASLGWPEQTAELKTYYPTSVLVTGFDILFFWVARMMMMG-LYFMKDAEGKGIEP 575 S P+A L +P + + + +P ++ G D W ++++ F G P Sbjct: 230 SGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALF-------GKAP 282 Query: 576 FHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL 631 + V +H V D++G+KMSKS GN VDP +V+D+YGADALR + + V D+ Sbjct: 283 YKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338 Score = 92.7 bits (231), Expect = 4e-19 Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 16/143 (11%) Query: 45 PPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSL 104 PP G H GHA N ++DI+ R++ M+G V +PG D G+ ++ VE L Sbjct: 9 PPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKK 68 Query: 105 TREDIGRDAFIEK--------VWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNA 156 E +G F K V E ++ Q +RLG DW TMD + Sbjct: 69 DIEKMGIAEFNAKCREFALRYVDEQEE--------QFQRLGVWVDWENPYKTMDPEYMES 120 Query: 157 VRNAFVVLYKDGLIYRDKRIVNW 179 V F L++ GL+YR ++V W Sbjct: 121 VWWVFKQLHEKGLLYRGYKVVPW 143 >gnl|CDD|30492 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 558 Score = 98.8 bits (246), Expect = 6e-21 Identities = 82/416 (19%), Positives = 138/416 (33%), Gaps = 97/416 (23%) Query: 383 PHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLEN-IQPW 441 P C SG T E E ++ + + ++ P + +L+ ++ Sbjct: 173 PVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDL 232 Query: 442 CISRQ-IWWGHQIP--------VWYSPDGKLFVENTEDAALR--SAIDYYLSQDNDMTVK 490 I+R + WG +P VW+ DA + SA+ +D Sbjct: 233 SITRTDLDWGIPVPGDPGKVIYVWF------------DALIGYISALGELAEIGDD---- 276 Query: 491 VRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSVLVTGFDIL 550 + + WP EL V G DI+ Sbjct: 277 ------------------EDFKKF------------WPADDTEL-------VHFIGKDII 299 Query: 551 FF----WVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDV 606 F W A M+M G+ ++ H + GQKMSKS+GNVVDP ++ Sbjct: 300 RFHAVYWPA--MLMAA---------GLPLPTRIFAHGFLT-LEGQKMSKSRGNVVDPDEL 347 Query: 607 IDQYGADALRFYFSIMAVQGRDINLDLERIAGYRN--FITKFWN-AIRFSKMKNARHS-V 662 ++QYG DALR+Y + +G D + E N K N A R N V Sbjct: 348 LEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGV 407 Query: 663 SFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFV------WDELCDWY 716 ++ ++ + V ME + F + DE W Sbjct: 408 VPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPW- 466 Query: 717 VEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMD 772 + + E ++ L ++ + LL+P +P E ++ + ++D Sbjct: 467 -----KLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDAR 517 Score = 54.5 bits (131), Expect = 1e-07 Identities = 36/157 (22%), Positives = 55/157 (35%), Gaps = 23/157 (14%) Query: 39 FCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRL 98 + P G H+GH + D+ R+ R+RG V + GTD G ++ E Sbjct: 7 ILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK-- 64 Query: 99 FAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERF--TMDEGMSNA 156 E I ++K E K L S D F T Sbjct: 65 --------EGITPQELVDKNHE-------EFKELFKALNISFD----NFIRTTSPEHKEL 105 Query: 157 VRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVI 193 V+ F+ LY++G IY + + S + + D V Sbjct: 106 VQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE 142 >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 Score = 86.5 bits (215), Expect = 3e-17 Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 17/142 (11%) Query: 39 FCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRL 98 F I + P +G+LH+GH TI DI+ R++RM+G NVL+ G D A + E+ Sbjct: 2 FYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFD----AFGLPAEN-- 55 Query: 99 FAQSSLTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVR 158 A IGRD +W + + + QLKR+G S DW RE T D + Sbjct: 56 AA------IKIGRDPE-----DWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQ 104 Query: 159 NAFVVLYKDGLIYRDKRIVNWD 180 F+ LY+ GL Y+ + VNW Sbjct: 105 WLFLKLYEKGLAYKKEAPVNWC 126 Score = 67.3 bits (165), Expect = 2e-11 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 564 FMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMA 623 + D EP + + +V G+KMSKSKGNVV P + I +YGADA R Y A Sbjct: 248 ALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAA 306 Query: 624 VQGRDIN 630 D + Sbjct: 307 PPDADFD 313 >gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. Length = 183 Score = 82.6 bits (205), Expect = 5e-16 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 17/179 (9%) Query: 640 RNFITKFWNAIRFSKMKNAR-----HSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMEN 694 R + WNA RF A ++++WI+ RL ++I +VT ME Sbjct: 11 RKVLLPLWNAYRFFVT-YANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEA 69 Query: 695 HRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFS---YVLYNVCKLLH 751 + L F+ DEL +WY+ + E + L+ ++ VL + +L+ Sbjct: 70 YDLYTAVRALLEFI-DELTNWYIRRNRKRF--WGEEGDDDKLAAYATLYEVLLTLSRLMA 126 Query: 752 PIIPFVTEDLYSHVSPQDDMDKQGLLCH-AQWPSLIID--DSESIEEVNWIIDLISKVR 807 P PF+TE++Y ++ + + + H WP + D E E + + +++ R Sbjct: 127 PFTPFITEEIYQNLRRELGDAPESV--HLLDWPEVDESLIDEELEEAMELVREIVELGR 183 >gnl|CDD|35657 KOG0436, KOG0436, KOG0436, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 578 Score = 72.0 bits (176), Expect = 7e-13 Identities = 62/293 (21%), Positives = 111/293 (37%), Gaps = 64/293 (21%) Query: 507 DEDVLDTWFSSALWPFASLGWPEQT----AELKTYYPTSVLVTGFDILFF----WVARMM 558 D + WF + L + +G+P + L +P ++ V G DIL F W A +M Sbjct: 263 DSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLM 322 Query: 559 MMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFY 618 G+ ++++H KNG KMSKS GNVVDP +++ +YG DA+R++ Sbjct: 323 -----------AAGLPLPKMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQKYGVDAVRYF 370 Query: 619 FSIMAVQGRDINLDLERIAGYRN------------------------FITKFWNAIR-FS 653 G D + E++ N T ++ + Sbjct: 371 LLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAA 430 Query: 654 KMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDV-TVGMENHRFNDVSAVLYRFVWDEL 712 + + +V +P+ + L + + V ++G + A F D Sbjct: 431 EGEPLVDTVEKLPEVAA---TNYDNFSLYSALEAVLSIGNAGNTLVQQRAPWKLF-KD-- 484 Query: 713 CDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHV 765 +Q +E +++ L VL + LL P+ P ++ L S + Sbjct: 485 ------------SQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQL 525 Score = 41.9 bits (98), Expect = 0.001 Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 35 GSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITV 94 F + P V + H+GH ++T + D + RF+R++GK V++ GTD G+ Q Sbjct: 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAA 96 Query: 95 ES 96 + Sbjct: 97 AT 98 >gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. Length = 180 Score = 70.2 bits (173), Expect = 2e-12 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 25/191 (13%) Query: 633 LERIA-GYRNFITKFWNAIRF-----SKMKNARHSVSFVPQDVKWIVNKWIIKRLATVIN 686 L+++A YR K N RF + A+ +V + ++++ + RL +I Sbjct: 6 LKQVAEAYR----KIRNTFRFLLGNLNDFDPAKDAVPYEELL---ELDRYALHRLNELIK 58 Query: 687 DVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSIL--NQKDSELVSETLSCFSYVLY 744 +V EN+ F+ V L F +L +Y++ IK L + KDS + ++L Sbjct: 59 EVREAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILD 118 Query: 745 NVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLIID-DSESIEEVNWIIDLI 803 + KLL PI+PF E+++ H P + ++ L WP L + E +EE Sbjct: 119 ALLKLLAPILPFTAEEVWEH-LPGEKKEESVFL--EDWPELPEEWKDEELEEK------W 169 Query: 804 SKVRSIRTEMN 814 K+ ++R E+N Sbjct: 170 EKLLALRDEVN 180 >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 Score = 66.8 bits (164), Expect = 3e-11 Identities = 59/208 (28%), Positives = 86/208 (41%), Gaps = 72/208 (34%) Query: 433 EWLEN-IQPWCISRQIW-WGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVK 490 WL+ ++ I+R ++ WG IPV P ++V DA + Y+S Sbjct: 173 SWLKEGLKDLSITRDLFDWG--IPVPLDPGKVIYV--WFDALIG-----YIS-------- 215 Query: 491 VRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSVLVTGFDIL 550 N +E W+ GWPE V G DI+ Sbjct: 216 ---ATGYYN-------EEWGNSWWWKD--------GWPE-----------LVHFIGKDII 246 Query: 551 FF----WVARMMMMGLYFMKDAEGKGIE-PFHIV---YMHALVRDKNGQKMSKSKGNVVD 602 F W A M++G G+ P IV Y+ G+KMSKS+GNVVD Sbjct: 247 RFHAIYWPA--MLLGA---------GLPLPTRIVAHGYLTV-----EGKKMSKSRGNVVD 290 Query: 603 PIDVIDQYGADALRFYFSIMAVQGRDIN 630 P D++++YGADALR+Y +G+D + Sbjct: 291 PDDLLERYGADALRYYLLRERPEGKDSD 318 Score = 49.5 bits (119), Expect = 4e-06 Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 23/131 (17%) Query: 46 PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLT 105 P V G H+GH + T + D+ R++R+RG +VL+ GTD G + E Sbjct: 9 PYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE--------- 59 Query: 106 REDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWSRERF--TMDEGMSNAVRNAFVV 163 E + +K E K L S D F T V+ F Sbjct: 60 -EGVTPQELCDKYHE-------IFKDLFKWLNISFD----YFIRTTSPRHKEIVQEFFKK 107 Query: 164 LYKDGLIYRDK 174 LY++G IY + Sbjct: 108 LYENGYIYEGE 118 >gnl|CDD|35658 KOG0437, KOG0437, KOG0437, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 1080 Score = 62.3 bits (151), Expect = 7e-10 Identities = 74/301 (24%), Positives = 109/301 (36%), Gaps = 63/301 (20%) Query: 12 IEQKSVEKWNSVDAFRIDVAPKL--GSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRF 69 IE+K +KW++ F +D +L F + P P + G LH+GHAF+ + + + Sbjct: 17 IEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGY 76 Query: 70 ERMRGKNVLWQPGTDHAGI-----ATQITVESRLFA--------------QSSLTREDIG 110 ER++GKNVL+ G G+ A ++ E LF + T + I Sbjct: 77 ERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIE 136 Query: 111 RDAFIEK-------------VWEWKKESG--------------------GSILSQLKRLG 137 F K WE + G LKR G Sbjct: 137 DVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFG 196 Query: 138 ASCDWSRERFTMDEG--MSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVSDLEVIQK 195 DW R T D + VR F L + G I KR + P D + Sbjct: 197 LGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASG 256 Query: 196 EVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGDVAIAVHP 255 E + Y L++ K K ++R Y++ +T RPETM+G V P Sbjct: 257 E---GVGPQEYTLIKLEVLEPFPKALSSLK----DLRVYLVAATLRPETMYGQTNCYVGP 309 Query: 256 D 256 D Sbjct: 310 D 310 Score = 51.9 bits (124), Expect = 7e-07 Identities = 71/306 (23%), Positives = 128/306 (41%), Gaps = 49/306 (16%) Query: 346 IFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCE---RSGVTIEPCITEQWYL 402 + +++G A+ KI K++L++ D+ ++ P + RSG + +QWYL Sbjct: 475 LIGKYKGEKVEDAKPKI-----KTDLIETGDALKYNEPEKQVMSRSGDECIVALCDQWYL 529 Query: 403 DAKVLAESAIRSAKNGCLS----FIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYS 458 D E+ + CL F ++ + + L+ + W SR G ++P W Sbjct: 530 D---YGEAEWKKQAKECLENLNTFSDET-RNGFEDTLDWLGQWACSRSYGLGTRLP-W-- 582 Query: 459 PDGKLFVENTEDAALRSA---IDYYLSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWF 515 D + VE+ D+ + A + + L +D V+ IK ++D +V D F Sbjct: 583 -DEQYLVESLSDSTIYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTD------EVWDYVF 635 Query: 516 SSALWPFASLGWPEQTAELKT----YYPTSVLVTGFDIL-----FFWVARMMMMGLYFMK 566 + +P + E + L+ +YP + V+G D++ FF + + F + Sbjct: 636 LNEPYPKNTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVAL----FPE 691 Query: 567 DAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQG 626 KGI H ++ N +KMSKS GN + I+++GAD R + Sbjct: 692 KKWPKGIR----ANGHLML---NSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGV 744 Query: 627 RDINLD 632 D N Sbjct: 745 EDANFV 750 >gnl|CDD|30564 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 464 Score = 54.1 bits (130), Expect = 2e-07 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Query: 572 GIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGR-DIN 630 G++PF +MH + +G+KMSKS GN + D++ +Y + LR + ++ R ++ Sbjct: 248 GVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFL--LSSHYRSPLD 305 Query: 631 LDLERIAGYRNFITKFWNAIR 651 E + + + + +NA+R Sbjct: 306 FSEELLEEAKKALERLYNALR 326 >gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway. Length = 117 Score = 52.1 bits (125), Expect = 6e-07 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 5/121 (4%) Query: 633 LERIAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGM 692 ER+ R F+ + + + F + K + ++ ++ ++ RL I T + Sbjct: 1 EERLKQARAFLNRLYRLLSFFR-KALGGTQPKWDNELLEEADRELLARLQEFIKRTTNAL 59 Query: 693 ENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHP 752 E L++F + +WY++ +K L + EL L+ L + KLL P Sbjct: 60 EALDPTTAVQELFKFTNEL--NWYLDELKPAL--QTEELREAVLAVLRAALVVLTKLLAP 115 Query: 753 I 753 Sbjct: 116 F 116 >gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. Length = 353 Score = 50.8 bits (122), Expect = 2e-06 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 572 GIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINL 631 G P ++Y + K G KMS SKGNV+ P D ++ + LR+ ++ + I Sbjct: 257 GEPPVPVMY--EFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKHIGF 314 Query: 632 DLERIAGYRNFITKF 646 DL+ + Y + Sbjct: 315 DLDILRLYDEYDRLE 329 >gnl|CDD|145212 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes. Length = 355 Score = 43.8 bits (104), Expect = 2e-04 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Query: 575 PFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYF 619 P Y L+ K G KMS SKGN + + ++ ++LRF Sbjct: 263 PEPFPY--ELILLKGGGKMSSSKGNGITIEEWLEYAPPESLRFLM 305 >gnl|CDD|31574 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]. Length = 521 Score = 42.9 bits (101), Expect = 5e-04 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Query: 575 PFHIVYMHALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYF 619 P VY + K G KMS SKGNV+ D ++ + LR+ Sbjct: 262 PVPFVY--EWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLI 304 >gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213 Score = 42.2 bits (100), Expect = 7e-04 Identities = 12/31 (38%), Positives = 18/31 (58%) Query: 589 NGQKMSKSKGNVVDPIDVIDQYGADALRFYF 619 +G+KMSKS GN + D + +Y + LR Sbjct: 171 DGEKMSKSLGNFITVRDALKKYDPEVLRLAL 201 >gnl|CDD|110410 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases. Length = 301 Score = 38.5 bits (90), Expect = 0.008 Identities = 13/31 (41%), Positives = 19/31 (61%) Query: 589 NGQKMSKSKGNVVDPIDVIDQYGADALRFYF 619 G+KMSKS GN + DV+ +Y LR++ Sbjct: 250 EGEKMSKSLGNFLTIRDVLKRYDPRILRYFL 280 >gnl|CDD|30368 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 577 Score = 37.5 bits (87), Expect = 0.018 Identities = 13/32 (40%), Positives = 16/32 (50%) Query: 46 PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNV 77 N TG LH+GH N I D + R G +V Sbjct: 126 ANPTGPLHIGHLRNAIIGDSLARILEFLGYDV 157 Score = 36.0 bits (83), Expect = 0.047 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 24/98 (24%) Query: 562 LYFMKDAEGKGIEPFHIV-YMHALVRDKNGQKMSKSKGNVVDPIDVIDQ----------- 609 L + + G G + ++ LVR G KMS GNVV D++D+ Sbjct: 352 LKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEE 411 Query: 610 -----------YGADALRFYFSIMAVQGRDINLDLERI 636 G DA+R+ + + +D D ++ Sbjct: 412 KEEKNEEIAEVVGIDAVRYAD-LSRSRDKDYVFDWDKA 448 >gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. Length = 117 Score = 36.0 bits (84), Expect = 0.046 Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 19/95 (20%) Query: 673 VNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELV 732 +++W++ RL +I + T EN +F + + ++L DWY E + +N+ Sbjct: 36 IDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDL-DWYRERGGAGMNKD----- 89 Query: 733 SETLSCFSYVLYNVC----KLLHPIIPFVTEDLYS 763 +L +LL P P + E+++ Sbjct: 90 ---------LLRRFIEVWTRLLAPFAPHLAEEIWH 115 >gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. Length = 212 Score = 36.0 bits (84), Expect = 0.052 Identities = 34/133 (25%), Positives = 46/133 (34%), Gaps = 30/133 (22%) Query: 46 PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLT 105 N TG LH+GH N I D + R G +V + + G QI L S Sbjct: 9 ANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWG--RQI----GLLILS--- 59 Query: 106 REDIGRDAFIEKVWEWKK---ESGGSILSQLKRLGASCD-WSRERFTMDEGMSNAVRNAF 161 + +W+K ES + L RL D W E G+ V Sbjct: 60 ------------LEKWRKLVEESIKADLETYGRLDVRFDVWFGESSY--LGLMGKVVELL 105 Query: 162 VVLYKDGLIYRDK 174 L GL+Y + Sbjct: 106 EEL---GLLYEED 115 >gnl|CDD|37218 KOG2007, KOG2007, KOG2007, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 586 Score = 35.7 bits (82), Expect = 0.056 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Query: 589 NGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRD 628 NG+KMSKS N + + + +Y LR F + Q R Sbjct: 302 NGEKMSKSLKNFITIKEALKKYSPRQLRLAF--LLHQWRS 339 >gnl|CDD|35383 KOG0161, KOG0161, KOG0161, Myosin class II heavy chain [Cytoskeleton]. Length = 1930 Score = 34.4 bits (79), Expect = 0.13 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 14/77 (18%) Query: 880 DFVKERSRLKKSLEKVLDELSSIKKKLENNQ-FVEKAPPSI-------------LQAEKE 925 + K++ L L+K ELS ++ KLE+ Q V + I L+AE+ Sbjct: 1059 ELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERA 1118 Query: 926 RFSKVEKKRISLENSLE 942 +K E++R L LE Sbjct: 1119 SRAKAERQRRDLSEELE 1135 Score = 32.9 bits (75), Expect = 0.41 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 883 KERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENS 940 R++ ++ + +EL +K++LE + L+ K+R ++V+K R LE Sbjct: 1118 ASRAKAERQRRDLSEELEELKEELEE---QGGTTAAQLELNKKREAEVQKLRRDLEEE 1172 Score = 28.7 bits (64), Expect = 8.6 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 7/57 (12%) Query: 891 SLEKVLDELSSIKKKLE--NNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIR 945 SL++ + +LS KK+LE + + LQAE+E+ + K + LE L+ + Sbjct: 975 SLDENISKLSKEKKELEERIRELQDD-----LQAEEEKAKSLNKAKAKLEQQLDDLE 1026 >gnl|CDD|144375 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase. Length = 345 Score = 34.0 bits (78), Expect = 0.20 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 546 GFDILF-FWVAR--MMMMGLYFMKDAEG---KGIEPFHIVYMHALVRDKNGQKMSKSKGN 599 GFD++ A + L+ A G + +E HI + L +D G++MS GN Sbjct: 229 GFDLIIYVLGADQHGHIQRLFAAAAALGYDPESVEVLHIGFGVVLGKD--GKRMSTRAGN 286 Query: 600 VVDPIDVIDQYGADALR 616 VV D++D+ A+ Sbjct: 287 VVTLDDLLDEALERAMD 303 >gnl|CDD|146542 pfam03961, DUF342, Protein of unknown function (DUF342). This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length. Length = 450 Score = 33.8 bits (78), Expect = 0.25 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Query: 877 DFVDFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRIS 936 DF + +E L++ L+++ +EL IKK L+ +KA + ++E+ K+ + + Sbjct: 328 DFPELKEELKELEEELKELEEELEKIKKLLKKLP--KKARGQLPPEKREQLEKLLETKEK 385 Query: 937 LENSLERIR 945 L LE + Sbjct: 386 LSEELEELE 394 >gnl|CDD|147612 pfam05524, PEP-utilizers_N, PEP-utilising enzyme, N-terminal. Length = 123 Score = 33.4 bits (77), Expect = 0.35 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Query: 880 DFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQA 922 D E +RL+ +LEK +EL ++ ++ + E+A +I +A Sbjct: 32 DVEAEIARLEAALEKAREELEALAERAAESLGEEEA--AIFEA 72 >gnl|CDD|30358 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]. Length = 472 Score = 32.6 bits (74), Expect = 0.53 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 10/100 (10%) Query: 579 VYMH-ALVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIA 637 VY H L+ +++G+K+SK KG V ++ + AL +++ GR + I Sbjct: 236 VYAHLPLLLNEDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALL---GRGYPPEAIEIF 292 Query: 638 GYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWI 677 I F + SK +F + + W+ +++ Sbjct: 293 SLEEGIKWF-DLTIVSKS-----PAAFDRKKLDWLNPRYM 326 >gnl|CDD|36479 KOG1265, KOG1265, KOG1265, Phospholipase C [Lipid transport and metabolism]. Length = 1189 Score = 31.5 bits (71), Expect = 1.0 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Query: 881 FVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLE 938 FV+ER RL + K ++L +KK LE + + + + L AE E+ + + R+ E Sbjct: 1133 FVEERKRLAEKQSKRQEQL--VKKHLEVLEQLAEEEKA-LDAEAEQEYEEQMARLPAE 1187 >gnl|CDD|36181 KOG0963, KOG0963, KOG0963, Transcription factor/CCAAT displacement protein CDP1 [Transcription]. Length = 629 Score = 31.5 bits (71), Expect = 1.1 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 880 DFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLEN 939 +E LK+ LE+V +EL+ +K + V + + E+ +E E Sbjct: 118 KASEENEELKEELEEVNNELADLKTQQVT---VRNLKERLRKLEQLLEIFIENAANETEE 174 Query: 940 SLER 943 LE+ Sbjct: 175 KLEQ 178 >gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. Length = 269 Score = 30.7 bits (70), Expect = 1.8 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 14/61 (22%) Query: 574 EPFHIVYMHALVRDKNGQKMSKSKGNVV------DPIDV----IDQYGADALRF--YFSI 621 + + L+ +G KMSKS+GN + P DV + + D L F F+ Sbjct: 179 KVVGL--TTPLLTGLDGGKMSKSEGNAIWDPVLDSPYDVYQKIRNAFDPDVLEFLKLFTF 236 Query: 622 M 622 + Sbjct: 237 L 237 >gnl|CDD|31278 COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]. Length = 574 Score = 30.9 bits (70), Expect = 1.9 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Query: 880 DFVKERSRLKKSLEKVLDELSSIKKKLENNQFVEKAPPSILQA 922 D E RL +L EL ++K+K + EKA +I +A Sbjct: 36 DVEAEIERLDAALAAARAELEALKEKAAEDGGEEKA--AIFEA 76 >gnl|CDD|35490 KOG0269, KOG0269, KOG0269, WD40 repeat-containing protein [Function unknown]. Length = 839 Score = 30.4 bits (68), Expect = 2.6 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 10/69 (14%) Query: 640 RNFITKFWNAIRFSK-----MKNARHSVSFVPQDV--KWIVNKWIIKRLATVINDVTVGM 692 + + WN IR + N S + K ++N K L + V+ + Sbjct: 464 TEDVAQIWNNIRLTYGSHHRKPNVISESSSMKNSSVEKPLMNS---KNLTQIAEHVSPSL 520 Query: 693 ENHRFNDVS 701 + ND+ Sbjct: 521 DTEYRNDIE 529 >gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 143 Score = 30.1 bits (68), Expect = 3.0 Identities = 17/100 (17%), Positives = 26/100 (26%), Gaps = 6/100 (6%) Query: 44 PPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSS 103 G LH+GH D + + R G V D AG + + + Sbjct: 4 SGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAG---GLIGDPANKKGEN 60 Query: 104 LTREDIGRDAFIEKVWEWKKESGGSILSQLKRLGASCDWS 143 I++ E+ L CD Sbjct: 61 AKAFVERWIERIKEDVEYMFLQAADF---LLLYETECDIH 97 >gnl|CDD|36195 KOG0977, KOG0977, KOG0977, Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning, Nuclear structure]. Length = 546 Score = 29.9 bits (67), Expect = 3.2 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 21/86 (24%) Query: 883 KERSRLKKSLEKVLDELSSIKKKLE----------NNQFVEKAPPSILQAE----KERFS 928 +ER++L+ + K+ +EL ++KKLE + S L+AE K R Sbjct: 106 RERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 Query: 929 KVE--KKRISLENS-----LERIRML 947 +E KR+ ENS L R R Sbjct: 166 ALEDELKRLKAENSRLREELARARKQ 191 >gnl|CDD|35457 KOG0236, KOG0236, KOG0236, Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]. Length = 665 Score = 30.0 bits (67), Expect = 3.3 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 10/79 (12%) Query: 766 SPQDDMDKQGLLCHAQWPSLIIDDSESIEEVNWIIDL--ISKVRSIRTEMNVPLKAVVPL 823 + + L S+I+D S ID S ++S+ ++ V + Sbjct: 554 KEEVLENSARELHENSIHSVILDCSGVSF-----IDTSGASALKSLFKDLK---TRGVQV 605 Query: 824 VFANIDAHVRKRLECHKCI 842 + AN + VR++L Sbjct: 606 LLANCPSSVREKLSKAGFF 624 >gnl|CDD|37196 KOG1985, KOG1985, KOG1985, Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]. Length = 887 Score = 29.1 bits (65), Expect = 5.9 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 367 EKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQS 426 + L TD Y+ + C +S + ++ + + Y D L+ + S G + + P S Sbjct: 454 DSQLLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSG--GQVYYYP-S 510 Query: 427 WDKS 430 +D S Sbjct: 511 FDGS 514 >gnl|CDD|146057 pfam03234, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a molecular chaperone required for the activity of numerous eukaryotic protein kinases. This domain corresponds to the N terminal domain which binds predominantly to protein kinases and is found N terminal to the Hsp (Heat shocked protein) 90-binding domain pfam08565. Expression of a construct consisting of only the N-terminal domain of Saccharomyces pombe Cdc37 results in cellular viability. This indicates that interactions with the cochaperone Hsp90 may not be essential for Cdc37 function. Length = 172 Score = 29.0 bits (65), Expect = 6.0 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 5/67 (7%) Query: 846 LSSGNIIFADCPPDRSIQIILDGMV--LFLAIGDFVD---FVKERSRLKKSLEKVLDELS 900 + S N F D Q + MV LF + D VD L+K +K+ E Sbjct: 84 MKSLNENFTDKENVEPEQPTYNEMVEDLFDQVKDEVDEKNGAALIEELQKHRDKLKKEQK 143 Query: 901 SIKKKLE 907 + KKL+ Sbjct: 144 ELLKKLD 150 >gnl|CDD|144245 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y). Length = 291 Score = 28.8 bits (65), Expect = 8.2 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 6/44 (13%) Query: 573 IEPFHIVYMHALVRDKNGQKMSKSKGNVV-----DPIDVIDQYG 611 +P + L G+KMSKS GN + V + Sbjct: 179 KKPVGL-TNPLLTGLDGGKKMSKSAGNSAIFLDDEKESVYKKIQ 221 >gnl|CDD|39791 KOG4591, KOG4591, KOG4591, Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]. Length = 280 Score = 28.6 bits (63), Expect = 8.3 Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 20/182 (10%) Query: 273 VGRLIPIVSDVYPDPEFGDGAVKV-------TPAHDFNDFEIAKRHGLGFINILTPEAKI 325 + RL+ I +D+ +F D K PAH F A+ F N +++ Sbjct: 50 ISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKF--VLAARSDFWKFANGGDEKSEE 107 Query: 326 FLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHC 385 ++ F R I++ + +D ++ L E +N + + + Sbjct: 108 LDLDDADFEAFHTA---IRWIYT--DEIDFKEDDEFLLELCELANRF-QLELLKERCEKG 161 Query: 386 ERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISR 445 + + ++ CI ++Y A+ E R N I +WD + + + Sbjct: 162 LGALLHVDNCI--KFYEFAE---ELNARQLMNVAAEIIAGAWDDLGKADFAQMSAALLYK 216 Query: 446 QI 447 I Sbjct: 217 LI 218 >gnl|CDD|111754 pfam02900, LigB, Catalytic LigB subunit of aromatic ring-opening dioxygenase. Length = 265 Score = 28.4 bits (64), Expect = 8.3 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 7/65 (10%) Query: 491 VRKMIKDGNISDLLK-RDEDVLDTWFSSA------LWPFASLGWPEQTAELKTYYPTSVL 543 ++K G++ L +E + +LG E AE+ Y + Sbjct: 201 FLDLLKSGDLEALCAMLNEAPDAAAGHPEEELLPWVVALGALGGDEIRAEVFGYGAVPMS 260 Query: 544 VTGFD 548 + GF Sbjct: 261 IAGFG 265 >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859 Score = 28.5 bits (64), Expect = 9.9 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 18/77 (23%) Query: 884 ERSRLKKSLEKVL----DELSSIKKKLENNQ-FVEKAPPSI-------------LQAEKE 925 E R K+ LE L ELS + KLE+ Q V + I L+AE+ Sbjct: 1 ELERQKRELENQLYRKESELSQLSSKLEDEQALVAQLQKKIKELEARIRELEEELEAERA 60 Query: 926 RFSKVEKKRISLENSLE 942 +K EK R L LE Sbjct: 61 ARAKAEKARADLSRELE 77 >gnl|CDD|153412 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. Length = 117 Score = 28.3 bits (64), Expect = 10.0 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 18/128 (14%) Query: 636 IAGYRNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENH 695 + G F+ + W +++ A + + + + +K + ++L I VT +E Sbjct: 6 VEGAYRFLNRVWR--LVTELAEALAAPAAAAELSE--EDKELRRKLHKTIKKVTEDIERL 61 Query: 696 RFNDVSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIP 755 RFN A L V + L K Q + ++ E L LL P P Sbjct: 62 RFNTAIAALMELV-NALYK-----YKKKDAQ-HAAVLREALETL-------VLLLAPFAP 107 Query: 756 FVTEDLYS 763 + E+L+ Sbjct: 108 HIAEELWE 115 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.138 0.424 Gapped Lambda K H 0.267 0.0774 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 12,144,021 Number of extensions: 680973 Number of successful extensions: 1870 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1785 Number of HSP's successfully gapped: 91 Length of query: 947 Length of database: 6,263,737 Length adjustment: 103 Effective length of query: 844 Effective length of database: 4,038,010 Effective search space: 3408080440 Effective search space used: 3408080440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 62 (27.6 bits)