BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(947 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 947
Score = 1953 bits (5060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 947/947 (100%), Positives = 947/947 (100%)
Query: 1 MMIDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNT 60
MMIDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNT
Sbjct: 1 MMIDKTYDFAFIEQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNT 60
Query: 61 TIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWE 120
TIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWE
Sbjct: 61 TIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIGRDAFIEKVWE 120
Query: 121 WKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWD 180
WKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWD
Sbjct: 121 WKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWD 180
Query: 181 PSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTT 240
PSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTT
Sbjct: 181 PSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTT 240
Query: 241 RPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAH 300
RPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAH
Sbjct: 241 RPETMFGDVAIAVHPDDYRYKELIGKYATLPIVGRLIPIVSDVYPDPEFGDGAVKVTPAH 300
Query: 301 DFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARS 360
DFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARS
Sbjct: 301 DFNDFEIAKRHGLGFINILTPEAKIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARS 360
Query: 361 KIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCL 420
KIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCL
Sbjct: 361 KIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIEPCITEQWYLDAKVLAESAIRSAKNGCL 420
Query: 421 SFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYY 480
SFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYY
Sbjct: 421 SFIPQSWDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYY 480
Query: 481 LSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPT 540
LSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPT
Sbjct: 481 LSQDNDMTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPT 540
Query: 541 SVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNV 600
SVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNV
Sbjct: 541 SVLVTGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNV 600
Query: 601 VDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARH 660
VDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARH
Sbjct: 601 VDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARH 660
Query: 661 SVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFI 720
SVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFI
Sbjct: 661 SVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFI 720
Query: 721 KSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHA 780
KSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHA
Sbjct: 721 KSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHA 780
Query: 781 QWPSLIIDDSESIEEVNWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHK 840
QWPSLIIDDSESIEEVNWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHK
Sbjct: 781 QWPSLIIDDSESIEEVNWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHK 840
Query: 841 CIIDRLSSGNIIFADCPPDRSIQIILDGMVLFLAIGDFVDFVKERSRLKKSLEKVLDELS 900
CIIDRLSSGNIIFADCPPDRSIQIILDGMVLFLAIGDFVDFVKERSRLKKSLEKVLDELS
Sbjct: 841 CIIDRLSSGNIIFADCPPDRSIQIILDGMVLFLAIGDFVDFVKERSRLKKSLEKVLDELS 900
Query: 901 SIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRML 947
SIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRML
Sbjct: 901 SIKKKLENNQFVEKAPPSILQAEKERFSKVEKKRISLENSLERIRML 947
>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 963
Score = 155 bits (391), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 196/829 (23%), Positives = 326/829 (39%), Gaps = 121/829 (14%)
Query: 13 EQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERM 72
E + + W + F +G F + PP G +H+GHA N ++D+++R +M
Sbjct: 30 ESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQM 89
Query: 73 RGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIG----RDAFIEKVWEWKKESGGS 128
R N + PG D G+ + VE+ A+ ++DI R A + W K
Sbjct: 90 RNFNACFVPGWDCHGLPIEWKVENEYLAKGK-KKDDIPVNEFRQACRDSASAWVKIQS-- 146
Query: 129 ILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVS 188
+ +RLG D+ TM + + + + + IYR + + W + +T+++
Sbjct: 147 --KEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLA 204
Query: 189 DLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGD 248
+ E+ +VD + V +P+ D+ ++ I++ TT P T+ G+
Sbjct: 205 EAEIEYHDVDSDSILVGFPVKSSA---------------DYLIKSQIVIWTTTPWTIPGN 249
Query: 249 VAIAV-----------------HPDDYRYKELIGKYATLPIVGRL--------------- 276
AIA H D K +I K I +
Sbjct: 250 RAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDL 309
Query: 277 -----------------IPIVSDVYPDPEFGDGAVKVTPAHDFNDFEI---AKRHGLG-F 315
+P++ Y + G G V V P+H DF AK L
Sbjct: 310 SKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRS 369
Query: 316 INILTPEA----KIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNL 371
++I P + +E F VL D G A I +L+ +
Sbjct: 370 VDIKVPSPVDGRGFYTTEAPGFSGARVLDDA---------GEKGNANEVVIAALINACAI 420
Query: 372 LDKTDSYRHIVPHCERSGVTIEPCITEQWYL--DAKVLAESAIRS---AKNGCLSFIPQS 426
L+++ +H PH RS I T QW+L D K+ S +RS ++ + F P S
Sbjct: 421 LNRS-IVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSS 479
Query: 427 WDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDND 486
+EN W +SRQ WG I +Y+ G++ ++ + + I + Q +D
Sbjct: 480 GKNRLRSMIENRPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRI---IKTFKDQGSD 536
Query: 487 --MTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSVLV 544
+ R S+ + +D+LD WF SA LG + K +P V +
Sbjct: 537 AWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILLG-----KDPKLAWPADVYL 591
Query: 545 TGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPI 604
G D W ++ + +G PF + H D+NG+KMSKSKGNVV P
Sbjct: 592 EGSDQHRGWFQHSLL------ESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPE 645
Query: 605 DVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSF 664
++I + GAD LR Y+++ + D L I + K N IR+ + H
Sbjct: 646 EIISESGADVLR-YWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRW-MLGMLAHDTGN 703
Query: 665 VPQDVKW-IVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSI 723
P + + ++ RL + V + F +V L F EL +Y + K
Sbjct: 704 EPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDS 763
Query: 724 LNQKDSELVSETLSCFSYVLYNVCKLL----HPIIPFVTEDLYSHVSPQ 768
L DS + LS + V+ +C+ L PI+PF E+ + ++P+
Sbjct: 764 L-YCDSPSSLKRLSSIA-VIRILCRHLIIWIAPILPFTAEEAWLSLNPE 810
>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 869
Score = 109 bits (273), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 188/865 (21%), Positives = 319/865 (36%), Gaps = 232/865 (26%)
Query: 46 PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLT 105
P +G++HMGH N I D++ RF R G +VL G D G+
Sbjct: 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPA--------------- 87
Query: 106 REDIGRDAFIE-KVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVL 164
E+ R+ + K+W + ++ + QL+ +G S DWS++ T D + + F+
Sbjct: 88 -ENAAREHNVHPKMWTY--QNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDF 144
Query: 165 YKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDD-- 222
K +I R VNWDP +T +++ +VI +G W P+ + + K D
Sbjct: 145 MKHNVIVRKTAQVNWDPVEQTVLANEQVI----NGRGWRSDAPVEQRSLPQWFFKISDLS 200
Query: 223 ----------------------------DAKPIDWEVR-------DYIIVSTTRPETMFG 247
+ I WE+ + I+V TTRPET+FG
Sbjct: 201 QELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFG 260
Query: 248 D--VAIAV--------HPDDYRYKELIG----KYATLPIVGR------------------ 275
+AIAV D+ KE K +L ++ +
Sbjct: 261 ASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNP 320
Query: 276 --LIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESF 333
+IP+ + +G GA+ P D D + AK++GL I I+ K ++ ++
Sbjct: 321 NVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIM----KRSINHSQDI 376
Query: 334 LENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTIE 393
E S + I S F LD + T++ + ++ H E+ +
Sbjct: 377 EEGKAFSGDGIMINSSF--LDG----------------MTNTEALQAVMSHLEKQNIKNS 418
Query: 394 PCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQI 453
P + ++F ++ WCISRQ WG I
Sbjct: 419 PIGKRK--------------------INF--------------RLRDWCISRQRSWGCPI 444
Query: 454 PVWYSPDGKLFVENTED--AALRSAIDYYLSQ---DNDMTVKVRKMIKDGNISDLLKRDE 508
PV + + ED L +D+ L +N T K +K G S+ L R+
Sbjct: 445 PVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCG--SEAL-RET 501
Query: 509 DVLDTWFSSALWPFASLGWPEQTAEL-----KTYYPTSVLVTGFD--ILFFWVARMMMMG 561
D +DT+ S+ W + P + + ++P + G + +L AR
Sbjct: 502 DTMDTFVDSS-WYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHI 560
Query: 562 LYFMKDAEGKGIEPFHIVYMHALV-----------------------RDKNGQ------- 591
L + E EPF ++ +V R+ G+
Sbjct: 561 LKKIGYIEID--EPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLS 618
Query: 592 -----------KMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYR 640
KMSKSK NV+DP+ VI YGAD R + + RDI + +
Sbjct: 619 DNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDSTY 678
Query: 641 NFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFNDV 700
FI + W I +K S +D+ +I + + + +N FN
Sbjct: 679 QFIQQIWRLIYNAK---DELQTSSTKKDIS------LISKSTKFLERIEENYQNLSFNKA 729
Query: 701 SAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTED 760
A ++ EL + + + I +K + ++ +S Y+L + ++ P+IP + E+
Sbjct: 730 VANIH-----ELVNVISKPLMEIAKKKSN---ADRISTIRYILEKLIIMMSPMIPHLAEE 781
Query: 761 LYSHVSPQDDMDKQGLLCHAQWPSL 785
+ + GL+ +WP L
Sbjct: 782 CWQL------LGNAGLVAQQKWPKL 800
>gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 511
Score = 52.0 bits (123), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 16/96 (16%)
Query: 537 YYPTSVLVTGFDILFF----WVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQK 592
++P + V G DIL F W A ++ L K V+ H + K G+K
Sbjct: 255 FWPADLHVIGKDILRFHAIYWPAFLLSANLPLPKK-----------VFSHGFILHK-GEK 302
Query: 593 MSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRD 628
+SKS GNV+DPI+VI++ G DALR++ G+D
Sbjct: 303 ISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKD 338
Score = 42.0 bits (97), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 42 AMPPPNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTD-----------HAGIAT 90
A+ PN H+GHA+ I D++ RF R+ G +VL+ GTD +AG+ T
Sbjct: 12 AIAYPNAQP--HIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQNAGVTT 69
Query: 91 QITVE--SRLFAQSSLTREDIGRDAFI 115
++ V+ SR F + DI D FI
Sbjct: 70 KVFVDQNSRNFRDMADVL-DISYDDFI 95
>gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 586
Score = 29.3 bits (64), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 584 LVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRF 617
L RD KMSK G+ + V+D+ G+D++RF
Sbjct: 391 LYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRF 424
>gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 264
Score = 28.5 bits (62), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 749 LLHPIIPFVTEDLYSHVSPQDDMDKQGLLCHAQWPSLIIDDSESIEEVNWI 799
LL P+ PF + + P D M + +L H Q P + D +IE V+ I
Sbjct: 183 LLTPVSPFKPRRWHGAILPNDVMIEIQVLEHKQRPVIATADRLAIEPVSRI 233
>gi|254781114|ref|YP_003065527.1| glycosyl transferase family protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 263
Score = 24.6 bits (52), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 15/56 (26%)
Query: 448 WWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDNDMTVKVRKMIKDGNISDL 503
WW H IP TE A+ AID ND T++ ++++ S L
Sbjct: 183 WWEHNIPSLV----------TEPGAVYEAID-----TNDSTIEESRLVRKPTFSPL 223
>gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
Length = 673
Score = 24.6 bits (52), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 792 SIEEVNWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHKCIIDRLSSGNI 851
S +W L S SIR E +P F N +++K+ E K +I S +
Sbjct: 313 SQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSEL 372
Query: 852 IFA---DCPPD 859
+ DC P+
Sbjct: 373 VLEVVNDCLPE 383
>gi|254781213|ref|YP_003065626.1| head-to-tail joining protein, putative [Candidatus Liberibacter
asiaticus str. psy62]
Length = 556
Score = 24.3 bits (51), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 669 VKWIVNKWIIKRLATVINDVTVGMENHRFNDVSAV 703
V IV+KW K L++ + EN RF + AV
Sbjct: 183 VDQIVSKWGDKVLSSKMKSALARNENERFTIIHAV 217
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 629,792
Number of Sequences: 1233
Number of extensions: 27715
Number of successful extensions: 84
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 17
length of query: 947
length of database: 328,796
effective HSP length: 83
effective length of query: 864
effective length of database: 226,457
effective search space: 195658848
effective search space used: 195658848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 43 (21.2 bits)